Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01749 ATGGGATGTATAATAAGCCGAGAGGTAGCTTCCAGGAACTTAGCAGATTCTGAGGAGAAGAAGGAGAAGAGTTCTGAATGTGGTGATGATTTGGAAAGAAAAGAAGCCGATGTGGCTGTTGTTGAGGTTGCTCAGGAGGAAGGGCATGGCCATGGGGGTCAGCCCTTGACAAAAGAGCAGAGAAGAAAGTTGAAACCTAACCCCAGGTTGAGTAATTTGCCAAAGCAATCTCAGGCGGAGCAGGTGGCTGCTGGATGGCCTTCCTGGCTCACAGCAGTCTGTGGGGAGGCACTCAGTGGTTGGATTCCGAGGAAGGCTGATACATTTGAGAAGATTGATAAGATTGGACAAGGAACATACAGTAATGTGTACAAAGCAAAAGATATACTGACCGGTAAAGTTGTTGCATTGAAGAAGGTTCGTTTTGATAATTTAGAGCCCGAAAGTGTAAGATTTATGGCCAGAGAGATTCTCATTTTGCGACGCCTAGATCATCCAAATGTTGTAAAGTTAGAGGGTTTGGTTACGTCAAGGATGTCATGTAGTTTGTACCTTGTGTTTGAGTACATGGAGCATGATTTAGCTGGACTTGCTGCAAATCCATCCATCAAATTTACAGAGGCTCAGGTTAAGTGTTTCATGCAACAACTTCTATCAGGACTCGAGCATTGTCATAGCCACAGGGTGCTTCATCGTGATATTAAGGGTTCAAATCTTCTTATTGATGGTGAAGGGTTGCTTAAGATTGCTGACTTTGGACTAGCTACTTTCTTTGATCCAAAACAGAAGCACCCATTGACTAATCGTGTTGTAACCTTATGGTATCGATCCCCCGAGCTTCTACTTGGTGCGACTCACTATGGTGTAGGCATTGACCTTTGGAGTGCAGGTTGTATTTTAGCAGAGTTATTATCTGGGAGGGCCATAATGCCTGGCCGAACAGAGGTTGAGCAACTACATAAGATATTCAAGCTGTGTGGCTCAGCTTCTGATGAATATTTAAAGAGAGCAAAGTTGCCAAATGCAGCCTTATTTAGACCCCGAGAACCATATAAGAGATGTATAAAAGAGACATTTAAGGATTTCCCTCCATCGTCATTTCCCCTTATAGAAACACTTCTTGCAATTGATCCAGCTGAGAGAATGACAGCTACAGATGCATTAAAGAGCGAGTTTTTCACTACAGAACCTTATGCTTGTGAACCTTCTAGTCTCCCCAAATATCCACCTAGTAAGGAGATGGATGCCAAACGACGGGATGATGAAGCACGAAGACAAAGAGCAGCAAGTAAATTGCAGAATGATCGTGTGAAGAAGACACGCACACGTAACCGTGCTGGTAGGGCCATACCTATTCAAGGAGCCAACGCTGAACTTCAAGCAAATATTGATAGACGGCGTCTAATTACTCATGCAAATGCAAAGAGCAAGAGCGAAAAGTTCCCCCCTCCATATCAGGATGGGGCACTCGGATTCACATTAGGATATTCACGTCATATTGATCCAGCTGTTGTTCCTTCTGATGTTCCTTTTAGCTCCACATCATTTGGCTATCCAAACGAACTAGACCAAGCCTGGTCGGGTCCATTGGTTCAATCTTCTGACATCGGTGCTCAAAGGCAGAAACATTTGGGAGGTGATGAAAGAGAACAGCAATCTTCAAGTGTTTTTGCACGCAAGTACATAAATAATATCAAAAAAATGCTTCTTGACGATGGTGCTGCCATTCTTTGCCCAAATATAAGTGAATGA 1752 43.55 MGCIISREVASRNLADSEEKKEKSSECGDDLERKEADVAVVEVAQEEGHGHGGQPLTKEQRRKLKPNPRLSNLPKQSQAEQVAAGWPSWLTAVCGEALSGWIPRKADTFEKIDKIGQGTYSNVYKAKDILTGKVVALKKVRFDNLEPESVRFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAANPSIKFTEAQVKCFMQQLLSGLEHCHSHRVLHRDIKGSNLLIDGEGLLKIADFGLATFFDPKQKHPLTNRVVTLWYRSPELLLGATHYGVGIDLWSAGCILAELLSGRAIMPGRTEVEQLHKIFKLCGSASDEYLKRAKLPNAALFRPREPYKRCIKETFKDFPPSSFPLIETLLAIDPAERMTATDALKSEFFTTEPYACEPSSLPKYPPSKEMDAKRRDDEARRQRAASKLQNDRVKKTRTRNRAGRAIPIQGANAELQANIDRRRLITHANAKSKSEKFPPPYQDGALGFTLGYSRHIDPAVVPSDVPFSSTSFGYPNELDQAWSGPLVQSSDIGAQRQKHLGGDEREQQSSSVFARKYINNIKKMLLDDGAAILCPNISE 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26533664 26544730 - MELO3C004349.2.1 Cme05g01749 328812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01749 583 PANTHER CELL DIVISION PROTEIN KINASE 54 541 - -
Cme05g01749 583 Gene3D Phosphorylase Kinase; domain 1 96 191 - -
Cme05g01749 583 SMART serkin_6 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g01749 583 Gene3D Transferase(Phosphotransferase) domain 1 192 433 - -
Cme05g01749 583 MobiDBLite consensus disorder prediction 411 440 - -
Cme05g01749 583 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Cme05g01749 583 MobiDBLite consensus disorder prediction 52 66 - -
Cme05g01749 583 MobiDBLite consensus disorder prediction 1 78 - -
Cme05g01749 583 Pfam Protein kinase domain 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g01749 583 PANTHER OS01G0367700 PROTEIN 54 541 - -
Cme05g01749 583 ProSiteProfiles Protein kinase domain profile. 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g01749 583 MobiDBLite consensus disorder prediction 400 443 - -
Cme05g01749 583 SUPERFAMILY Protein kinase-like (PK-like) 104 398 IPR011009 -
Cme05g01749 583 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524
Cme05g01749 583 CDD STKc_CDK9_like 109 393 - -
Cme05g01749 583 MobiDBLite consensus disorder prediction 12 44 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme02g00153 Cme05g01749 CCT
Cme02g00153 Cme05g01749 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01749 Cme-Chr5:26533664 Cme06g00688 Cme-Chr6:4487424 0 dispersed
Cme01g01588 Cme-Chr1:21206055 Cme05g01749 Cme-Chr5:26533664 8.01E-17 transposed
Cme06g01197 Cme-Chr6:9416222 Cme05g01749 Cme-Chr5:26533664 0 transposed
Cme09g00045 Cme-Chr9:330932 Cme05g01749 Cme-Chr5:26533664 0 transposed
Cme10g01289 Cme-Chr10:13887860 Cme05g01749 Cme-Chr5:26533664 0 transposed
Cme12g01566 Cme-Chr12:23051938 Cme05g01749 Cme-Chr5:26533664 0 transposed
Cme02g00153 Cme-Chr2:1140221 Cme05g01749 Cme-Chr5:26533664 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64902 PF00069 Pkinase 2.10E-67 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01749 K08819 - csv:101217497 1074.31