Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme05g01749 | ATGGGATGTATAATAAGCCGAGAGGTAGCTTCCAGGAACTTAGCAGATTCTGAGGAGAAGAAGGAGAAGAGTTCTGAATGTGGTGATGATTTGGAAAGAAAAGAAGCCGATGTGGCTGTTGTTGAGGTTGCTCAGGAGGAAGGGCATGGCCATGGGGGTCAGCCCTTGACAAAAGAGCAGAGAAGAAAGTTGAAACCTAACCCCAGGTTGAGTAATTTGCCAAAGCAATCTCAGGCGGAGCAGGTGGCTGCTGGATGGCCTTCCTGGCTCACAGCAGTCTGTGGGGAGGCACTCAGTGGTTGGATTCCGAGGAAGGCTGATACATTTGAGAAGATTGATAAGATTGGACAAGGAACATACAGTAATGTGTACAAAGCAAAAGATATACTGACCGGTAAAGTTGTTGCATTGAAGAAGGTTCGTTTTGATAATTTAGAGCCCGAAAGTGTAAGATTTATGGCCAGAGAGATTCTCATTTTGCGACGCCTAGATCATCCAAATGTTGTAAAGTTAGAGGGTTTGGTTACGTCAAGGATGTCATGTAGTTTGTACCTTGTGTTTGAGTACATGGAGCATGATTTAGCTGGACTTGCTGCAAATCCATCCATCAAATTTACAGAGGCTCAGGTTAAGTGTTTCATGCAACAACTTCTATCAGGACTCGAGCATTGTCATAGCCACAGGGTGCTTCATCGTGATATTAAGGGTTCAAATCTTCTTATTGATGGTGAAGGGTTGCTTAAGATTGCTGACTTTGGACTAGCTACTTTCTTTGATCCAAAACAGAAGCACCCATTGACTAATCGTGTTGTAACCTTATGGTATCGATCCCCCGAGCTTCTACTTGGTGCGACTCACTATGGTGTAGGCATTGACCTTTGGAGTGCAGGTTGTATTTTAGCAGAGTTATTATCTGGGAGGGCCATAATGCCTGGCCGAACAGAGGTTGAGCAACTACATAAGATATTCAAGCTGTGTGGCTCAGCTTCTGATGAATATTTAAAGAGAGCAAAGTTGCCAAATGCAGCCTTATTTAGACCCCGAGAACCATATAAGAGATGTATAAAAGAGACATTTAAGGATTTCCCTCCATCGTCATTTCCCCTTATAGAAACACTTCTTGCAATTGATCCAGCTGAGAGAATGACAGCTACAGATGCATTAAAGAGCGAGTTTTTCACTACAGAACCTTATGCTTGTGAACCTTCTAGTCTCCCCAAATATCCACCTAGTAAGGAGATGGATGCCAAACGACGGGATGATGAAGCACGAAGACAAAGAGCAGCAAGTAAATTGCAGAATGATCGTGTGAAGAAGACACGCACACGTAACCGTGCTGGTAGGGCCATACCTATTCAAGGAGCCAACGCTGAACTTCAAGCAAATATTGATAGACGGCGTCTAATTACTCATGCAAATGCAAAGAGCAAGAGCGAAAAGTTCCCCCCTCCATATCAGGATGGGGCACTCGGATTCACATTAGGATATTCACGTCATATTGATCCAGCTGTTGTTCCTTCTGATGTTCCTTTTAGCTCCACATCATTTGGCTATCCAAACGAACTAGACCAAGCCTGGTCGGGTCCATTGGTTCAATCTTCTGACATCGGTGCTCAAAGGCAGAAACATTTGGGAGGTGATGAAAGAGAACAGCAATCTTCAAGTGTTTTTGCACGCAAGTACATAAATAATATCAAAAAAATGCTTCTTGACGATGGTGCTGCCATTCTTTGCCCAAATATAAGTGAATGA | 1752 | 43.55 | MGCIISREVASRNLADSEEKKEKSSECGDDLERKEADVAVVEVAQEEGHGHGGQPLTKEQRRKLKPNPRLSNLPKQSQAEQVAAGWPSWLTAVCGEALSGWIPRKADTFEKIDKIGQGTYSNVYKAKDILTGKVVALKKVRFDNLEPESVRFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAANPSIKFTEAQVKCFMQQLLSGLEHCHSHRVLHRDIKGSNLLIDGEGLLKIADFGLATFFDPKQKHPLTNRVVTLWYRSPELLLGATHYGVGIDLWSAGCILAELLSGRAIMPGRTEVEQLHKIFKLCGSASDEYLKRAKLPNAALFRPREPYKRCIKETFKDFPPSSFPLIETLLAIDPAERMTATDALKSEFFTTEPYACEPSSLPKYPPSKEMDAKRRDDEARRQRAASKLQNDRVKKTRTRNRAGRAIPIQGANAELQANIDRRRLITHANAKSKSEKFPPPYQDGALGFTLGYSRHIDPAVVPSDVPFSSTSFGYPNELDQAWSGPLVQSSDIGAQRQKHLGGDEREQQSSSVFARKYINNIKKMLLDDGAAILCPNISE | 583 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 26533664 | 26544730 | - | MELO3C004349.2.1 | Cme05g01749 | 328812 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme05g01749 | 583 | PANTHER | CELL DIVISION PROTEIN KINASE | 54 | 541 | - | - | |
Cme05g01749 | 583 | Gene3D | Phosphorylase Kinase; domain 1 | 96 | 191 | - | - | |
Cme05g01749 | 583 | SMART | serkin_6 | 109 | 393 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme05g01749 | 583 | Gene3D | Transferase(Phosphotransferase) domain 1 | 192 | 433 | - | - | |
Cme05g01749 | 583 | MobiDBLite | consensus disorder prediction | 411 | 440 | - | - | |
Cme05g01749 | 583 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 229 | 241 | IPR008271 | GO:0004672|GO:0006468 | |
Cme05g01749 | 583 | MobiDBLite | consensus disorder prediction | 52 | 66 | - | - | |
Cme05g01749 | 583 | MobiDBLite | consensus disorder prediction | 1 | 78 | - | - | |
Cme05g01749 | 583 | Pfam | Protein kinase domain | 109 | 393 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme05g01749 | 583 | PANTHER | OS01G0367700 PROTEIN | 54 | 541 | - | - | |
Cme05g01749 | 583 | ProSiteProfiles | Protein kinase domain profile. | 109 | 393 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme05g01749 | 583 | MobiDBLite | consensus disorder prediction | 400 | 443 | - | - | |
Cme05g01749 | 583 | SUPERFAMILY | Protein kinase-like (PK-like) | 104 | 398 | IPR011009 | - | |
Cme05g01749 | 583 | ProSitePatterns | Protein kinases ATP-binding region signature. | 115 | 138 | IPR017441 | GO:0005524 | |
Cme05g01749 | 583 | CDD | STKc_CDK9_like | 109 | 393 | - | - | |
Cme05g01749 | 583 | MobiDBLite | consensus disorder prediction | 12 | 44 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cme02g00153 | Cme05g01749 | CCT | |
Cme02g00153 | Cme05g01749 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme05g01749 | Cme-Chr5:26533664 | Cme06g00688 | Cme-Chr6:4487424 | 0 | dispersed | |
Cme01g01588 | Cme-Chr1:21206055 | Cme05g01749 | Cme-Chr5:26533664 | 8.01E-17 | transposed | |
Cme06g01197 | Cme-Chr6:9416222 | Cme05g01749 | Cme-Chr5:26533664 | 0 | transposed | |
Cme09g00045 | Cme-Chr9:330932 | Cme05g01749 | Cme-Chr5:26533664 | 0 | transposed | |
Cme10g01289 | Cme-Chr10:13887860 | Cme05g01749 | Cme-Chr5:26533664 | 0 | transposed | |
Cme12g01566 | Cme-Chr12:23051938 | Cme05g01749 | Cme-Chr5:26533664 | 0 | transposed | |
Cme02g00153 | Cme-Chr2:1140221 | Cme05g01749 | Cme-Chr5:26533664 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
64902 | PF00069 | Pkinase | 2.10E-67 | CL0016 | Cme | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme05g01749 | K08819 | - | csv:101217497 | 1074.31 |