Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01762 ATGGATGGTGTCTCAGATCTTGAGCTTGATTGCTCTGAATTTGTTGAAGTTGATCCCACTGGCAGATATGGCAGATACAATGAAATTTTGGGAAAAGGGGCTTCAAAAACAGTTTACAGAGCATTTGACGAATATGAAGGAATTGAGGTGGCTTGGAATCAAGTTAAACTTTATGATTTCTTGCAAAGTCCTGAAGATCTGGAAAGACTTTACTGTGAGATTCATCTTTTGAAGACATTGAAGCATAGAAATATTATGAAATTCTATACTTCTTGGGTTGATATTGCAAATAGAAACATCAATTTTGTTACTGAAATGTTCACTTCCGGCACTCTTAGACAGTATAGGCTGAAACATAAGAGAGTTAATATTAGAGCAGTGAAGCATTGGTGCAGGCAGATTTTGAGAGGGCTTCATTATTTGCATAGCCACGAGCCTCCTGTAATCCATAGAGATCTCAAGTGTGACAATATCTTTGTTAATGGGAATCAAGGGGAAGTTAAGATTGGTGATCTTGGACTTGCAGCCATCCTCAGGAAATCTCATGCTGATCATTGTGTGGGGACACCTGAGTTTATGGCTCCGGAAGTGTATGCCGAGGCGTACAACGAATTAGTCGATATATACTCATTTGGAATGTGCATTCTAGAGATGATAACTTTCGAATATCCGTACAGCGAATGCACACATCCTGCTCAAATCTATAAGAAAGTCATATCTGGGAAAAAACCAGATGCCTTGTACAAAGTGAAGGATCCCGAAGTGCGGCAGTTCATCGATAAGTGTTTGGCTACAGTTTCATATAGGCTCTCAGCAGCAGAGCTTTTGAATGACCCTTTTCTTCGAGTTGATAATGGCGAATATGATCTAAGACCTGTCGATTATGGAAGAGGATTGGACGATGTTTGCCCTCTTATAAGACAGCCTTATCTAGAACTTCATAGAAGTGACAGCTCCTTTTGTACTGGATATCCATATGATTATAGTTTTGAAGCTTCAAGTGAATCTGGTTATCATCCAATTGATAATGAAACCAATGGAATTGAACTTTTTGAGTATTGTGAAGGTGAACATTCTGAGGACGTTGATATTAGCATTAAAGGGAAGATGAGCGAAGATGGTGGCATCTTCTTAAGACTTAGAATTGCAGATAAAGAAGGGCGCATCAGGAACATTTATTTCCCATTTGATGTAGAGACAGATACAGCATTGAGTGTCGCGACAGAAATGGTTGCGGAGCTGGATATGACAGATCAAGACGTAACAAGAATTGCTGATATGATCGATGGAGAAATTGCTTCCTTGGTGCCTGAATGGAGGCCAGGTCCGGGAATTGAGGAAACGCCCCGCTTTGCAAACCAAAGCTATTGTCATAATTGTGCTCCTTCTACTTACAACAGTGCTTCAAATGGTCTTATGTTGAGAAATCGTGATGGAAAGAACTCAGAGGTAGCTCAATGTTGTGGACATCGATATGCTTCAATGCATGGTCGTTTTGAGGAGATAATGTATCAAGCTGACGAGTCAGGGCATCATACAGCAGAGGAAGCACCAAATGTGTCGAGCCATCCTGGTGGGCTGAATTATCCTGAAATATGGGGACATCATGAAAGCCGTGAACTTAGTTCAATGAGCTCACGACAAAGCCATTCAGATGAAGATTACGAGAAAACAGACCGACCACTTACAGACACAGACACAAAAGAAATGATCATGGAAAGTAAAACCGCTCCTAATACAAGACGTACGCTTAGGAGCTTGATGAATTCTCTTTCTTTCTCAGAAACCCCTTCTCCTCCCGATATTAATGAGAATGATGTCCAACAAGAAATGAGATGGATTAAGGCCAAGTACCAATTAGAATTAAACAAGCTCAGAGATCAACAGTTAAATCTTTCTTCAAAATCTTCAAGTTCTGAAGACAAACAACAAAAGATGGAAAATGAAACTCCTCGAGGCAACCACAACCAAATCCTTGACAGTTCCAGTCGAGACACGAACCGAAGTAGTACTGATAGCCATGTTTATATCAATAATAGCTGTTACAGTACAGACGTGCCCAAGCAAAGGGCTCGAAATCGCAAGGCTGTGGAGTCCTCTATTGTGGAGAAAGTTGCAACTGCTAAAAATGCCTGCAATGGTTCGTTGCTTCCAAGCTCCCTTCATAGAACAATCTCTCTCCCAGTTGATGCTGTTCATATATAA 2205 40.73 MDGVSDLELDCSEFVEVDPTGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHRNIMKFYTSWVDIANRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILRGLHYLHSHEPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSHADHCVGTPEFMAPEVYAEAYNELVDIYSFGMCILEMITFEYPYSECTHPAQIYKKVISGKKPDALYKVKDPEVRQFIDKCLATVSYRLSAAELLNDPFLRVDNGEYDLRPVDYGRGLDDVCPLIRQPYLELHRSDSSFCTGYPYDYSFEASSESGYHPIDNETNGIELFEYCEGEHSEDVDISIKGKMSEDGGIFLRLRIADKEGRIRNIYFPFDVETDTALSVATEMVAELDMTDQDVTRIADMIDGEIASLVPEWRPGPGIEETPRFANQSYCHNCAPSTYNSASNGLMLRNRDGKNSEVAQCCGHRYASMHGRFEEIMYQADESGHHTAEEAPNVSSHPGGLNYPEIWGHHESRELSSMSSRQSHSDEDYEKTDRPLTDTDTKEMIMESKTAPNTRRTLRSLMNSLSFSETPSPPDINENDVQQEMRWIKAKYQLELNKLRDQQLNLSSKSSSSEDKQQKMENETPRGNHNQILDSSSRDTNRSSTDSHVYINNSCYSTDVPKQRARNRKAVESSIVEKVATAKNACNGSLLPSSLHRTISLPVDAVHI 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26633620 26637753 - MELO3C004361.2.1 Cme05g01762 328825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01762 734 MobiDBLite consensus disorder prediction 533 571 - -
Cme05g01762 734 Gene3D - 374 440 - -
Cme05g01762 734 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1 1 723 - -
Cme05g01762 734 MobiDBLite consensus disorder prediction 508 583 - -
Cme05g01762 734 CDD STKc_WNK 22 281 - -
Cme05g01762 734 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Cme05g01762 734 MobiDBLite consensus disorder prediction 630 678 - -
Cme05g01762 734 SMART serkin_6 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g01762 734 SUPERFAMILY Protein kinase-like (PK-like) 27 282 IPR011009 -
Cme05g01762 734 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g01762 734 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 377 430 IPR024678 GO:0004674|GO:0005524
Cme05g01762 734 ProSiteProfiles Protein kinase domain profile. 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g01762 734 Gene3D Transferase(Phosphotransferase) domain 1 107 287 - -
Cme05g01762 734 Coils Coil 615 635 - -
Cme05g01762 734 Gene3D Phosphorylase Kinase; domain 1 10 105 - -
Cme05g01762 734 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 723 - -
Cme05g01762 734 MobiDBLite consensus disorder prediction 650 678 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01561 Cme-Chr1:20725952 Cme05g01762 Cme-Chr5:26633620 0 dispersed
Cme02g01435 Cme-Chr2:20933388 Cme05g01762 Cme-Chr5:26633620 0 dispersed
Cme05g01762 Cme-Chr5:26633620 Cme12g01658 Cme-Chr12:23634019 1.61E-167 dispersed
Cme05g01762 Cme-Chr5:26633620 Cme11g01446 Cme-Chr11:21379247 1.03E-168 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64903 PF00069 Pkinase 9.00E-50 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01762 K08867 - csv:101219552 1424.45