Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01776 ATGGCATTGTTGAGTTATAGAAAAAATGATGACATAGTTGAGATTGACTATGAAGAATGCTCGGTTAATCCCAAAACTCACAAACGACGATGGAGAATGGCCTTTGCAGCCATTTATTTCACCAGAGTTCTCATTTCTCTATCGAAAAAAGTCGGCGGCCGCAAGTTCTTGCGATCTCTTTCCTATGTTACTATTGATATGCACCTGAATAATCATCATGATGTTGAAAATATGGATTCAGACGAACGGTTGTACGTTGATCGAAAAGTTTTGAGTATGATGGTGAGGGAGAAGAATTTCGAGTGTTTGGATCGATTTGGAGGTGTTGATGGACTTGCTGATCTTCTCGAAACGAACTCCGAGAAGGGAATCGTTGCAACGGAAGATGATCTAATTTCTAGAAAAGATACTTTTGGAACAAATACTTATTTGAAGCTCCATGGTAGAAGCTTCATGAGTTTTGTGATTGAAGCGCTTAACGATACAACGATGATTATTCTTTTGATATGTGCAGCACTTTCCTTAGGATTTGGTATCAAACAACACGGTTGGGACGATGGATGGTACGATGGTGGCAGCATTGTTGTTGCCATATTTCTTGTGGTTGGCGTTTCCACTATTAGCAACTTCAAGCAGTCGAGGCAGTTCGAGAAGCTTTCAAATGAGAGAGAGGACATAAAAATCGAGGTCACTAGAGCCGGTCGACGCAAACCAGTATCGATATTTGACATCGTCGTTGGAGACATTGTGTATTTGAAGATTGGAGATCAGATTCCTGCCGATGGAGTGTTCCTCGAAGGGCATTCGCTGAAAGTCGACGAGTCTCACATGACTGGAGAGAGTGATCAAGTTGAAGTAAATCATGGAAGTAATCCATTTTTGCTATCAGGAACCAAAGTGAGTGATGGTTTTGGTGTGATGATGGTTACTTCAGTGGGAATGAACACAACCTGGGGAGAGATGATGAGTTCAATCAGGCAAGAAGTTAATGAAATCACTCCTTTGCAAGCTCGTTTAAACAAGATGACCGCGGTGATCGGAAAGCTCGGACTGACGGTTGCCCTGCTCGTACTCCTTGTTCTTCTTGTTCGCTATTTCACCAGAAGCACCGGCGAGTTCAATGGAAGCAAGACGAGGTTCAATGATATCATGAATGCAATTCTTGACATGGTTACCGCCGCGGTTACAATCCTCGTTGTAGCGATACCGGAAGGTTTGCCTCTAGCTGTTACTTTAACTTTAGCTTACTCAATGAAAAAGATGATGGCAGATAATGCAATGGTTAGGAAACTCTCTGCTTGTGAGACAATGGGATCAGCAACAACAATTTGTACAGATAAAACTGGCACCCTTACTTTGAATGAGATGAAAGTTACTGAGTTTTGGATTGGGGAAGATGAAATTATGGACAAACATCTTTCCAATTCAAGGATTGTTGAATTGTTGCACCAAGCAGTTGGCTTGAATACAACTGGTAGTGTTCAAAGATCTACTTCTTCATTGCCTCTAGAAATATTCGGGAGTCCAACTGAGAAAGCGATACTTTCATGGGCCGTGTTCGACTTGGATTTGAACCTAGATGAACTGAAGAAGCAACATGAAATAATCCAAGTGGAGACTTTCAGTTCAGAGAAAAAGAGAAGCGGGGTTTCGACAAGACGCTATGGGGAGAAGTTTATCCATACACATTGGAAGGGAGCAGCCGAGATGATATTGACAATGTGCTCATATTATTATAACAAACAGGGAACAGTTAGAGCCATTGATGACGAATCAAGAAAACGATTGATTACGACAATCACAACTATGGCAGGAAAAAGTCTCCGATGCATAGCCTTCGCCCAGAAGCAAAACGAAGACAACGACAATCCAGAAGTTCCTACTAAACTTGACGAATCGGGATTGACATTACTCGGAATAGTCGGTTTGAAGGATCCTTGCAGGCCAGGAGTTAGAGAAGCTATAGAATCGTGTAAAGCGGCAGGAGTGAACATCAAAATGGTGACAGGTGATAACTTACACACAGCAACAGCCATAGCAATTGAATGTGGGATACTAAATCCCGACGACAATACGAACAATGACGAAGTTGTAGTCGAGGGCATAAGATTTAGAAACTACACACCTGAGGAGAGACTAGAAAAGATTGACAACATCAAAGTAATGGCTAGATCTTCTCCATTTGACAAGCTTCTAATGGTACAATGCTTGAAGAATTTAGGCCATGTAGTGGCAGTTACAGGGGATGGAACAAATGATGCCCCTGCTCTTCATGAAGCAGACATTGGTCTTTCAATGGGAATTCAAGGAACCGAAGTTGCAAAAGAGAGCTCGGACATCGTCATCTTAGACGACAACTTCACGTCGGTCGTCACGGTTTTGAAATGGGGAAGATGTGTTTACAACAACATCCAAAAGTTCATTCAATTTCAACTCACAGTAAATGTTGCAGCATTAGTAGTGAACTTCATTGCTGCTGTTTCATCAGGTAAAGTTTCTTTAACAGCAGTTCAGCTATTATGGGTGAATCTTATAATGGACACCATGGGAGCTTTAGCCTTAGCCACTGAGCAACCCACGAACGACCTCATGGCCAAAAAGCCAGTCGGACGAACCGAACCATTGGTGACGAAAGTCATGTGGAGGAATCTCATTGCACAGGCTGTGTATCAAGTGACAGTTTTATTGGTTTTGGAGTTTAAAGGAGGTGTCATCTTTAATGTGGAGGGAAAGGTTAAGGACACACTCGTTTTCAATACTTTTGTGCTATGCCAAATCTTTAACGAGTTCAATGCAAGGAAGATGGAGAAGAAGAATATTTTTGAAGGGATACATAAAAGCAAGGTGTTTTTGGGAATAATTGTTATAACTTTGGGTTTTCAAGTGGTAATGGTGGAACTTTTGGGAAGGTTTGCAAATACAAGAAGGTTGAATTTGGGGCAATGGGGAATATGTATTGCCATTGCAGCTTTGTCTTGGCCAATTGGATGGCTTTCTAAGTTAATACCAGTTTCTGCCCTTCATTTTCCAAGGAGAAATTAG 3042 41.68 MALLSYRKNDDIVEIDYEECSVNPKTHKRRWRMAFAAIYFTRVLISLSKKVGGRKFLRSLSYVTIDMHLNNHHDVENMDSDERLYVDRKVLSMMVREKNFECLDRFGGVDGLADLLETNSEKGIVATEDDLISRKDTFGTNTYLKLHGRSFMSFVIEALNDTTMIILLICAALSLGFGIKQHGWDDGWYDGGSIVVAIFLVVGVSTISNFKQSRQFEKLSNEREDIKIEVTRAGRRKPVSIFDIVVGDIVYLKIGDQIPADGVFLEGHSLKVDESHMTGESDQVEVNHGSNPFLLSGTKVSDGFGVMMVTSVGMNTTWGEMMSSIRQEVNEITPLQARLNKMTAVIGKLGLTVALLVLLVLLVRYFTRSTGEFNGSKTRFNDIMNAILDMVTAAVTILVVAIPEGLPLAVTLTLAYSMKKMMADNAMVRKLSACETMGSATTICTDKTGTLTLNEMKVTEFWIGEDEIMDKHLSNSRIVELLHQAVGLNTTGSVQRSTSSLPLEIFGSPTEKAILSWAVFDLDLNLDELKKQHEIIQVETFSSEKKRSGVSTRRYGEKFIHTHWKGAAEMILTMCSYYYNKQGTVRAIDDESRKRLITTITTMAGKSLRCIAFAQKQNEDNDNPEVPTKLDESGLTLLGIVGLKDPCRPGVREAIESCKAAGVNIKMVTGDNLHTATAIAIECGILNPDDNTNNDEVVVEGIRFRNYTPEERLEKIDNIKVMARSSPFDKLLMVQCLKNLGHVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIVILDDNFTSVVTVLKWGRCVYNNIQKFIQFQLTVNVAALVVNFIAAVSSGKVSLTAVQLLWVNLIMDTMGALALATEQPTNDLMAKKPVGRTEPLVTKVMWRNLIAQAVYQVTVLLVLEFKGGVIFNVEGKVKDTLVFNTFVLCQIFNEFNARKMEKKNIFEGIHKSKVFLGIIVITLGFQVVMVELLGRFANTRRLNLGQWGICIAIAALSWPIGWLSKLIPVSALHFPRRN 1013
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26749671 26752712 - MELO3C004374.2.1 Cme05g01776 328839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01776 1013 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 94 1004 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Cme05g01776 1013 SUPERFAMILY Calcium ATPase, transmembrane domain M 107 1005 IPR023298 -
Cme05g01776 1013 Gene3D - 157 1000 - -
Cme05g01776 1013 ProSitePatterns E1-E2 ATPases phosphorylation site. 446 452 IPR018303 -
Cme05g01776 1013 Gene3D - 454 646 IPR023299 GO:0000166
Cme05g01776 1013 Pfam haloacid dehalogenase-like hydrolase 441 761 - -
Cme05g01776 1013 Pfam Cation transporter/ATPase, N-terminus 108 174 IPR004014 -
Cme05g01776 1013 PANTHER CATION TRANSPORTING ATPASE 25 996 - -
Cme05g01776 1013 SFLD C1.7: P-type atpase like 426 800 - -
Cme05g01776 1013 PANTHER CALCIUM-TRANSPORTING ATPASE 25 996 - -
Cme05g01776 1013 Gene3D - 129 326 - -
Cme05g01776 1013 Pfam Cation transporting ATPase, C-terminus 834 1002 IPR006068 -
Cme05g01776 1013 SFLD p-type atpase 426 800 IPR044492 -
Cme05g01776 1013 PRINTS H+-transporting ATPase (proton pump) signature 596 614 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme05g01776 1013 PRINTS H+-transporting ATPase (proton pump) signature 747 763 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme05g01776 1013 PRINTS H+-transporting ATPase (proton pump) signature 779 804 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme05g01776 1013 CDD P-type_ATPase_Ca_PMCA-like 134 880 - -
Cme05g01776 1013 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 450 651 IPR023299 GO:0000166
Cme05g01776 1013 PRINTS P-type cation-transporting ATPase superfamily signature 273 287 - -
Cme05g01776 1013 PRINTS P-type cation-transporting ATPase superfamily signature 444 458 - -
Cme05g01776 1013 PRINTS P-type cation-transporting ATPase superfamily signature 639 650 - -
Cme05g01776 1013 PRINTS P-type cation-transporting ATPase superfamily signature 661 671 - -
Cme05g01776 1013 PRINTS P-type cation-transporting ATPase superfamily signature 747 766 - -
Cme05g01776 1013 PRINTS P-type cation-transporting ATPase superfamily signature 771 783 - -
Cme05g01776 1013 SUPERFAMILY HAD-like 442 851 IPR036412 -
Cme05g01776 1013 Gene3D - 441 792 IPR023214 -
Cme05g01776 1013 Pfam E1-E2 ATPase 227 422 - -
Cme05g01776 1013 SUPERFAMILY Calcium ATPase, transduction domain A 227 324 IPR008250 -
Cme05g01776 1013 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 386 496 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme05g01776 1013 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 718 828 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00540 Cme-Chr1:4044921 Cme05g01776 Cme-Chr5:26749671 4.73E-104 dispersed
Cme01g02025 Cme-Chr1:28940364 Cme05g01776 Cme-Chr5:26749671 0 dispersed
Cme05g01258 Cme-Chr5:20368424 Cme05g01776 Cme-Chr5:26749671 0 dispersed
Cme05g01739 Cme-Chr5:26408350 Cme05g01776 Cme-Chr5:26749671 2.32E-17 dispersed
Cme05g01776 Cme-Chr5:26749671 Cme09g01069 Cme-Chr9:14953029 0 dispersed
Cme05g01776 Cme-Chr5:26749671 Cme08g00653 Cme-Chr8:4271327 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01776 K01537 - csv:101218531 1861.66