Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01796 ATGAATGCCAATACCAATGTGATGTTATCTCTTTTCTTCGTCTTGCTAGGGATTTTTAATGGCGTTTATTCTGCCTCTGTTCTTGCTCCACCTCCAGATCCGCCATTGTTGTTACGCTGTGGTTCTAATGAGGACGCCACTGATGAAAATGGCCGAAAATGGATTTCTGATTCTAAATTCCTCGACCCCAAAAACACCCTAGCCGTACCGGCTGGATTTCAAGATCCATCCATGACTTCTCAGGTTCCGTATATGGAAGCTCGGGTTTTCACCGCCGTGACGGCGTATAAATTCCCGATCAAACCTGGTAATCGTTATTGGCTTCGACTTCATTTTTACCCTTCCACATACGGACCTCATGATTCTATGAATTCTTATTTCACCGTCGCTGCGAACGATTTGACTCTTGTGAAGAATTTTAGTGCTCATATGACTTGTCAAGCCTTCACTCAGGCTTACATTGTTCGTGAATTTACACTCGCAGCTACAGAATCTGAATCTTTGAATCTGACTTTCACACCTGTTTCTGGGTTTGCTTTTGTTAATGGGATTGAATTGATTCAAATGCCGGAGATCTTTGGGGAAGCTATAATGGTAGGTGCAAGGGAGCAAACCATGGATGTAACGGGGTCGAGTATGCAAACAATAGCGAGATTGAACGTCGGAGGGAGCTACATTTCTCCAGCAAACGATTCTGGTTTGAGTAGAGCATGGTATGATGATTATCCTTATCTTTTTGGTGCTTCTGAGGGTGTTGTGATGGAAGCTTCAAAGAGGTTGGTGATTGATTATAAAGATATGCCAAAGTATATTGGACCTGTGGACATTTACAGGACATTGAGATCAATGGGAACATCTAAGGATGTGAATGCTAATTACAATTTGACATGGTTGTTTCCTAATATTGATCCAGGGTTTATGTATCTTGTGAGGTTGCATTTTTGTGATGTGTCTTTGAGTAGGCCAAATCAGGTGGTGTTTGATGTGTTCATCAACAATCAAACTGCGGATGTGAATGGGATCGATGTGATAGCTTGGTCGGGTGCTAGGGGGGTTCCCAAATTTAGGGATTATGTTGTGTTTTCTAGCGAAGCGCCAACAATGCAGCAGATTTGGCTGGCAATGCATCCTAGGATGTCGGATGCACCCGAATTTGCAGATGCTATGTTGAATGGGGTCGAAATCTTCAAGCTCGATTCAGGGAAGAACTTGGCAGGGAAGAATCCTCAACCCTCAGCCTTTAGGGTGAAGGTTGAGGCTGAAGCAGAGAGGAATTTTGAAACAAAGGGCAATAATGCTGAAGTGATTGGTGGGGCTGCAGGGGGCGCTGCTGCTTTTGTTGTGGTTGCACTTTGCTTTGCAGTGTACCAAAGGAAGAATAGAGTGCCAGGGAATGATTCACACACAACTAGTTGGCTACCAATCTATGGGAACTCACATTCGAGTGGGAGCAAATCAACAGTGTCTGGTAAGAGTACGGCCAGTAATTTGGCTCAAGGTTTGGCTCGACATTTCTCGCTTTCCGAGATTTTACATGCTACCAAGAACTTTAGTGAATCTAATGTGATTGGGGTTGGAGGATTTGGGAAGGTGTACAAGGGAGTGATTGATGGAGGGACAAAAGTTGCTATTAAGAGGTCAAACCCATCATCAGAACAAGGAGTTCACGAGTTCCTTACGGAAATCGATTTGCTTTCAAAGCTAAGGCACAAACATTTGGTGTCCTTGATTGGTTTTTGTGATGAAGAGAATGAGATGTGTTTAATTTACGATTACATGGGTTTGGGAACTTTGAGGGAACATTTGTATAAGACCAACAACAAAACTCGTCTCTCATGGAAGCAAAGGTTGGAGATTTGTATTGGAGCAGCTAGGGGACTTCATTACCTTCACACAGGAGCACAATACACCATCATTCATAGAGATGTTAAAACTACCAACATTCTCTTGGATGAAAACTGGGTTGCAAAGGTCTCTGATTTCGGACTCTCGAAAACTGGTCCGAACATGGCTAATGGTCATGTTAGCACGGTAGTTAAGGGTAGCTTTGGCTACTTAGATCCGGAGTACTTCAGAAGGCAACAACTAACTGAAAAATCTGATGTCTATTCATTTGGAGTTGTCCTTTTTGAAGTATTATGTGCAAGGCCTGCTTTGAATCCAAACCTGCCGAAGGAACAGGTAAGCCTTGCAGATTGGGCGTTGCATTGCAAACGGAAAGGATTTCTTGAGGATCTCATCGACCCTCATCTTAAAGGGAAAATCACCCCTGACAGCTTGAAGAAGTTTGCAGATGCCGCTGAGAAATGCCTAGATGACCATGGTGCCGAGAGACCGTCTATGGGCGATGTGTTATGGAACCTTGAATTTGCTCTCCAACTTCAGGAAAGTGCCGATGGTGGTTCAAGTCATAGATCGAGGGTACATGAGGAAGATACCCAGAGAAGCCAAGAGATGGCTGCACATTACAACAACCTCAGCCTTGGAAATGAGCAAGACTTACTTCAATCTAATGAACAAAACAGTACTGCAATCTTCTCTCAACTTGTCCATCCGACAGGCCGATAA 2568 43.73 MNANTNVMLSLFFVLLGIFNGVYSASVLAPPPDPPLLLRCGSNEDATDENGRKWISDSKFLDPKNTLAVPAGFQDPSMTSQVPYMEARVFTAVTAYKFPIKPGNRYWLRLHFYPSTYGPHDSMNSYFTVAANDLTLVKNFSAHMTCQAFTQAYIVREFTLAATESESLNLTFTPVSGFAFVNGIELIQMPEIFGEAIMVGAREQTMDVTGSSMQTIARLNVGGSYISPANDSGLSRAWYDDYPYLFGASEGVVMEASKRLVIDYKDMPKYIGPVDIYRTLRSMGTSKDVNANYNLTWLFPNIDPGFMYLVRLHFCDVSLSRPNQVVFDVFINNQTADVNGIDVIAWSGARGVPKFRDYVVFSSEAPTMQQIWLAMHPRMSDAPEFADAMLNGVEIFKLDSGKNLAGKNPQPSAFRVKVEAEAERNFETKGNNAEVIGGAAGGAAAFVVVALCFAVYQRKNRVPGNDSHTTSWLPIYGNSHSSGSKSTVSGKSTASNLAQGLARHFSLSEILHATKNFSESNVIGVGGFGKVYKGVIDGGTKVAIKRSNPSSEQGVHEFLTEIDLLSKLRHKHLVSLIGFCDEENEMCLIYDYMGLGTLREHLYKTNNKTRLSWKQRLEICIGAARGLHYLHTGAQYTIIHRDVKTTNILLDENWVAKVSDFGLSKTGPNMANGHVSTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPALNPNLPKEQVSLADWALHCKRKGFLEDLIDPHLKGKITPDSLKKFADAAEKCLDDHGAERPSMGDVLWNLEFALQLQESADGGSSHRSRVHEEDTQRSQEMAAHYNNLSLGNEQDLLQSNEQNSTAIFSQLVHPTGR 855
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26890858 26893706 + MELO3C004393.2.1 Cme05g01796 328859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01796 855 Gene3D - 36 190 - -
Cme05g01796 855 Gene3D - 211 398 - -
Cme05g01796 855 Gene3D Phosphorylase Kinase; domain 1 478 592 - -
Cme05g01796 855 ProSitePatterns Serine/Threonine protein kinases active-site signature. 638 650 IPR008271 GO:0004672|GO:0006468
Cme05g01796 855 ProSitePatterns Protein kinases ATP-binding region signature. 523 545 IPR017441 GO:0005524
Cme05g01796 855 PANTHER OS07G0166700 PROTEIN 27 837 IPR045272 GO:0004714|GO:0006468
Cme05g01796 855 SUPERFAMILY Protein kinase-like (PK-like) 502 786 IPR011009 -
Cme05g01796 855 ProSiteProfiles Protein kinase domain profile. 517 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g01796 855 Pfam Protein tyrosine and serine/threonine kinase 520 783 IPR001245 GO:0004672|GO:0006468
Cme05g01796 855 PANTHER RECEPTOR-LIKE PROTEIN KINASE ANXUR2 27 837 - -
Cme05g01796 855 Pfam Malectin-like domain 40 397 IPR024788 -
Cme05g01796 855 CDD STKc_IRAK 523 789 - -
Cme05g01796 855 Gene3D Transferase(Phosphotransferase) domain 1 593 814 - -
Cme05g01796 855 SMART serkin_6 517 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01796 Cme-Chr5:26890858 Cme08g02094 Cme-Chr8:26526109 0 dispersed
Cme08g02076 Cme-Chr8:26158878 Cme05g01796 Cme-Chr5:26890858 9.37E-60 dispersed
Cme09g00208 Cme-Chr9:1632232 Cme05g01796 Cme-Chr5:26890858 8.22E-162 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64905 PF12819 Malectin_like 4.60E-36 CL0202 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01796 - - csv:101219475 1623.6