Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01816 ATGATGGCAAACCGGTGGTGGACCTCCGGCCAGATGGGTCTTCCCGGAGTTGATCATACATCAACAAGCTCCTCTGCTATGAGAAAACCAGATCTGGGAATCTCCATGAACGACAACGGTGGTCCTGTTCACAGTGGTGGTGATGACGATGACGATAGGGATAACGGTGGCGATGAACCTAAAGAAGGAGCAGTTGAAGTTCCAACGCGTCGTCCCCGTGGTCGCCCGCCAGGGTCCAAGAATAAGCCTAAGCCACCTATCTTTGTTACTAGAGATAGCCCTAATGCCCTAAAAAGCCATGTCATGGAGATTTCTAATGGAGCTGATATTGCCGAGAGCGTTGCTCAATTCGCTCGACGGCGACAGAGAGGAGTTTCTGTGCTTAGTGGTAGCGGTACGGTTACAAATGTCACACTCCGACAACCGTCTGCGCCTGGTGCAGTCTTAGCCCTCCAGGGCCGATTCGAGATACTTTCTTTAACTGGAACTTTCCTCCCTGGACCAGCCCCACCTGGCTCAACCGGACTAACGATCTACTTGGCTGGTGGACAAGGGCAAGTGGTGGGTGGCAGCGTCGTCGGGCCACTCACCGCTGCTGGCCCGGTGATGGTGATTGCTGCAACATTTTCCAACGCAACATACGAAAGATTACCCTTAGAAGAGGAAGAAGAAGGCGGGGGAGTAGGAGCGCAAGGGCACACATCGGCAGGCGGTGGCGCAGGCGACAGTTCACCACAAGGCATCGGAGGCGGAGTCGGCGGGGATCCATCAGCTATGACTCCACTGTACAATTTACCACCAAATTTACTACCGAATGGCGGCGGAGGGCAGATGAACCAAGAGGCTTATTCTTGGGCTCACGGCGGCCGGCCGTCATTTTAA 882 54.42 MMANRWWTSGQMGLPGVDHTSTSSSAMRKPDLGISMNDNGGPVHSGGDDDDDRDNGGDEPKEGAVEVPTRRPRGRPPGSKNKPKPPIFVTRDSPNALKSHVMEISNGADIAESVAQFARRRQRGVSVLSGSGTVTNVTLRQPSAPGAVLALQGRFEILSLTGTFLPGPAPPGSTGLTIYLAGGQGQVVGGSVVGPLTAAGPVMVIAATFSNATYERLPLEEEEEGGGVGAQGHTSAGGGAGDSSPQGIGGGVGGDPSAMTPLYNLPPNLLPNGGGGQMNQEAYSWAHGGRPSF 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27058920 27060534 + MELO3C004413.2.1 Cme05g01816 328879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01816 293 MobiDBLite consensus disorder prediction 1 94 - -
Cme05g01816 293 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 8 292 IPR014476 GO:0003680
Cme05g01816 293 MobiDBLite consensus disorder prediction 14 30 - -
Cme05g01816 293 ProSiteProfiles PPC domain profile profile. 94 232 IPR005175 -
Cme05g01816 293 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 8 292 - -
Cme05g01816 293 MobiDBLite consensus disorder prediction 220 293 - -
Cme05g01816 293 PIRSF ESCAROLA 11 293 IPR014476 GO:0003680
Cme05g01816 293 Pfam Plants and Prokaryotes Conserved (PCC) domain 99 211 IPR005175 -
Cme05g01816 293 Gene3D - 98 224 - -
Cme05g01816 293 MobiDBLite consensus disorder prediction 44 69 - -
Cme05g01816 293 CDD DUF296 98 181 IPR005175 -
Cme05g01816 293 SUPERFAMILY AF0104/ALDC/Ptd012-like 95 223 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01816 Cme-Chr5:27058920 Cme10g00915 Cme-Chr10:6686355 4.81E-80 dispersed
Cme05g01816 Cme-Chr5:27058920 Cme06g00517 Cme-Chr6:3249890 1.17E-90 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01816 - - csv:101220902 452.21