Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01821 ATGGAACCCAATGAAAACCAGCTCAGCTCCTACTTCCACCACCATCAACACCACCATCAAACTCCCACCACCACATCGCCGACCAATGGCCTTCTTCCACCCACCCACCACCTTTCCGCCGCCGCCGCCTCCTCCGACGCCGGACCTCATGTTGTATACCCTCACTCCGTCCCTTCCGCCGCTGTTTCTTCTTCTCCCCTTGAACCCGCACGTAGGAAGAGAGGTCGGCCGAGGAAGTATGGAACGCCGGAGGAAGCTTTAGCGGCTAAGAAAGCTGCTACGGCCTCCTCTCACTCTTCGTCTTCTAAGGCTAAGAAGGAACTCGCTTCTTCTTCTTCTCTTAATGCCGTTTCCGCTTCTTCTTCCTTCTCAACGCCTTCTAAGAAATCTCAGTTGGCTGCACTTGATGTAGGTAATGCAGGCCAAGGTTTTGCCCCGCATGTTATTAATGTTGCAGCTGGTGAGGATGTGGGCCAGAAAATTATGCAGTTTATGCAACAATGTAAGCGGGAAATTTGTATCCTTTCTGCATCTGGTTCGATCTCCAATGCATCTCTCCGTCAGCCCGCCGCATCAGGAGGCAATATTGCATATGAGGGACGTTTTGAGATTGTTTCATTATGCGGATCTTATGTACGAACTGACCTTGGAGGAAAGACTGGTGGTCTTAGTGTATGTCTATCAAGTGCTGAAGGGCATATCATAGGAGGGGGAGTTGGTGGACCATTGAAGGCCGCTGGACCCGTGCAGGTTATTGTTGGAACCTTTGTAATCGACCCAAAGAAGGAATTTGGTGGTGGTAAAGGTGACGGATCTGCTGGCAAGTTGCCCTCACCTATTGGTGGGACATCGATGTCAAATCTACGCTATGGCTCCAACATTGACTCTGGAGGTAATCAAATAAGGGGAAATGATGAACATCAAGGTCTTGGGGAGAGTCATTTTTTGCTTCAGCCTCGGGGAGTGAATCTGACATCACCACGATCAACGGATTGGAGGACAGGTCTGGATGCCACAAACGCTGCTTATGATTTGTCAGGAAGAACAAGCCATCATTCTCCCGAAAATGGAGATTATGATCAGATTCCCGATTGA 1095 49.77 MEPNENQLSSYFHHHQHHHQTPTTTSPTNGLLPPTHHLSAAAASSDAGPHVVYPHSVPSAAVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKKELASSSSLNAVSASSSFSTPSKKSQLAALDVGNAGQGFAPHVINVAAGEDVGQKIMQFMQQCKREICILSASGSISNASLRQPAASGGNIAYEGRFEIVSLCGSYVRTDLGGKTGGLSVCLSSAEGHIIGGGVGGPLKAAGPVQVIVGTFVIDPKKEFGGGKGDGSAGKLPSPIGGTSMSNLRYGSNIDSGGNQIRGNDEHQGLGESHFLLQPRGVNLTSPRSTDWRTGLDATNAAYDLSGRTSHHSPENGDYDQIPD 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27092163 27098143 - MELO3C004418.2.1 Cme05g01821 328884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01821 364 CDD DUF296 146 256 IPR005175 -
Cme05g01821 364 MobiDBLite consensus disorder prediction 1 106 - -
Cme05g01821 364 ProSiteProfiles PPC domain profile profile. 140 278 IPR005175 -
Cme05g01821 364 MobiDBLite consensus disorder prediction 279 303 - -
Cme05g01821 364 MobiDBLite consensus disorder prediction 316 335 - -
Cme05g01821 364 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 354 IPR039605 GO:0003680
Cme05g01821 364 Pfam Plants and Prokaryotes Conserved (PCC) domain 146 257 IPR005175 -
Cme05g01821 364 MobiDBLite consensus disorder prediction 319 335 - -
Cme05g01821 364 MobiDBLite consensus disorder prediction 343 364 - -
Cme05g01821 364 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 14 1 354 - -
Cme05g01821 364 MobiDBLite consensus disorder prediction 267 307 - -
Cme05g01821 364 Gene3D - 146 265 - -
Cme05g01821 364 SUPERFAMILY AF0104/ALDC/Ptd012-like 143 257 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01821 Cme-Chr5:27092163 Cme07g00024 Cme-Chr7:197832 3.15E-45 dispersed
Cme05g01821 Cme-Chr5:27092163 Cme03g01327 Cme-Chr3:22821262 3.59E-46 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01821 - - csv:101221844 565.844