Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme05g01830 | ATGGCGGATAAAGGCAGAGACGGCGGTTACTCAAGTTTACTCGATGGGAAGTACGAATTAGGCCGTCTTCTAGGGCATGGTACCTTCGCTAAGGTTTATCATGCTCGGAATCTGAGGACGGGGAAGAGTGTCGCGATGAAAGTGGTTGGGAAGGAGAAGATAATCAAAGTCGGCATGACGGAGCAGATCAAGAGAGAAATCTCTGTGATGAAAATGGTGAAGCATCCGAATATTGTGGAGCTTCATGAGGTAATGGCGAGTAAATCGAAGATCTATTTCGCTATGGAGTTTGTTAGAGGCGGCGAACTGTTCTCCAAAATTGCGAAAGGTCGGCTACGAGAGGATGTAGCTAGGGTTTACTTTCAACAATTAATCTCTGCAATCGATTTCTGTCATAGCCGTGGAGTTTACCACCGTGATCTGAAACCGGAAAATCTCCTTCTCGATGAAGACGGTAACCTTAAGGTAACCGATTTCGGCCTCACCGCTTTCTCAGAACACTTGAAGCAAGACGGATTGTTGCATACAACGTGCGGAACTCCGGCGTACGTCGCACCAGAGGTCATCGGAAAGCAAGGATACGACGGCGCTAAGGCCGACCTGTGGTCATGTGGAGTCATCCTTTACGTTCTTCTCGCCGGATACCTTCCATTCCAAGACGACAACATGGTGGCCATGTACAGGAAGATTTACAGAGGCGACTTCAAATGTCCGCCGTGGTTCTCCCCTGAAGCCCGTCGGCTCATCACGAAGCTGCTAGATCCAAATCCCGTGACCAGAGCCGGTATCACGAAGATTACATCCTCGTCTTGGTTCAAGAAATCGGTACCGAAAACTCTGATTAGGAAGGATGAACAAGAACAAACAGAGGAGAATTTCACAAAATCAAAGCCACCGGCGGAAACATTAAACGCGTTCCACATAATATCTCTATCGGAAGGGTTTGATCTGTCGCCACTGTTTGAAGAGAAGAAAAGGGAAGAGAAAGAGGAGATGAGATTCGCAACATCGTCGACGGCGAGCAGTGTGATATCGAAGCTCGAGGAAGTGGCGAAGGCGGTGAAGTTCGATGTGAAGAAGAGCGAAACACGGGTTCGATTGCAGGGGCAGGAGATGGGGAGAAAAGGGAAACTGACGATTGCGGCGGATATCTTTGCGATGACGCCGTCGTTTGTGGTGGTGGAGGTGAAGAAGGATAACGGAGATACATTGGAGTATAATCAGTTCTGCAGGAAGGAGCTCCGGCCGGCATTGAAGGACATTGTTTGGACTTCTCCGACGGGGAATTCGACACCAGCTTGA | 1302 | 49.08 | MADKGRDGGYSSLLDGKYELGRLLGHGTFAKVYHARNLRTGKSVAMKVVGKEKIIKVGMTEQIKREISVMKMVKHPNIVELHEVMASKSKIYFAMEFVRGGELFSKIAKGRLREDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDEDGNLKVTDFGLTAFSEHLKQDGLLHTTCGTPAYVAPEVIGKQGYDGAKADLWSCGVILYVLLAGYLPFQDDNMVAMYRKIYRGDFKCPPWFSPEARRLITKLLDPNPVTRAGITKITSSSWFKKSVPKTLIRKDEQEQTEENFTKSKPPAETLNAFHIISLSEGFDLSPLFEEKKREEKEEMRFATSSTASSVISKLEEVAKAVKFDVKKSETRVRLQGQEMGRKGKLTIAADIFAMTPSFVVVEVKKDNGDTLEYNQFCRKELRPALKDIVWTSPTGNSTPA | 433 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 27161860 | 27163708 | + | MELO3C004428.2.1 | Cme05g01830 | 328893 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme05g01830 | 433 | ProSiteProfiles | Protein kinase domain profile. | 18 | 272 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme05g01830 | 433 | Pfam | Protein kinase domain | 18 | 272 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme05g01830 | 433 | PANTHER | - | 10 | 430 | - | - | |
Cme05g01830 | 433 | Gene3D | Phosphorylase Kinase; domain 1 | 15 | 99 | - | - | |
Cme05g01830 | 433 | Gene3D | Transferase(Phosphotransferase) domain 1 | 100 | 298 | - | - | |
Cme05g01830 | 433 | Gene3D | Kinase associated domain 1, KA1 | 299 | 424 | - | - | |
Cme05g01830 | 433 | CDD | STKc_SnRK3 | 17 | 271 | - | - | |
Cme05g01830 | 433 | Pfam | NAF domain | 301 | 360 | IPR004041 | GO:0007165 | |
Cme05g01830 | 433 | SUPERFAMILY | Protein kinase-like (PK-like) | 15 | 290 | IPR011009 | - | |
Cme05g01830 | 433 | ProSiteProfiles | NAF domain profile. | 298 | 322 | IPR018451 | GO:0007165 | |
Cme05g01830 | 433 | CDD | CIPK_C | 304 | 419 | - | - | |
Cme05g01830 | 433 | PANTHER | NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE | 10 | 430 | - | - | |
Cme05g01830 | 433 | SMART | serkin_6 | 18 | 272 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme05g01830 | 433 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 136 | 148 | IPR008271 | GO:0004672|GO:0006468 | |
Cme05g01830 | 433 | ProSitePatterns | Protein kinases ATP-binding region signature. | 24 | 51 | IPR017441 | GO:0005524 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme04g01678 | Cme-Chr4:24090357 | Cme05g01830 | Cme-Chr5:27161860 | 5.55E-21 | dispersed | |
Cme04g01728 | Cme-Chr4:24822090 | Cme05g01830 | Cme-Chr5:27161860 | 9.38E-170 | dispersed | |
Cme05g01830 | Cme-Chr5:27161860 | Cme12g01283 | Cme-Chr12:20898876 | 0 | dispersed | |
Cme11g01444 | Cme-Chr11:21356838 | Cme05g01830 | Cme-Chr5:27161860 | 3.34E-155 | dispersed | |
Cme05g01830 | Cme-Chr5:27161860 | Cme02g01072 | Cme-Chr2:15744556 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
64906 | PF00069 | Pkinase | 7.30E-73 | CL0016 | Cme | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme05g01830 | - | K07198 | csv:101208458 | 835.099 |