Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01830 ATGGCGGATAAAGGCAGAGACGGCGGTTACTCAAGTTTACTCGATGGGAAGTACGAATTAGGCCGTCTTCTAGGGCATGGTACCTTCGCTAAGGTTTATCATGCTCGGAATCTGAGGACGGGGAAGAGTGTCGCGATGAAAGTGGTTGGGAAGGAGAAGATAATCAAAGTCGGCATGACGGAGCAGATCAAGAGAGAAATCTCTGTGATGAAAATGGTGAAGCATCCGAATATTGTGGAGCTTCATGAGGTAATGGCGAGTAAATCGAAGATCTATTTCGCTATGGAGTTTGTTAGAGGCGGCGAACTGTTCTCCAAAATTGCGAAAGGTCGGCTACGAGAGGATGTAGCTAGGGTTTACTTTCAACAATTAATCTCTGCAATCGATTTCTGTCATAGCCGTGGAGTTTACCACCGTGATCTGAAACCGGAAAATCTCCTTCTCGATGAAGACGGTAACCTTAAGGTAACCGATTTCGGCCTCACCGCTTTCTCAGAACACTTGAAGCAAGACGGATTGTTGCATACAACGTGCGGAACTCCGGCGTACGTCGCACCAGAGGTCATCGGAAAGCAAGGATACGACGGCGCTAAGGCCGACCTGTGGTCATGTGGAGTCATCCTTTACGTTCTTCTCGCCGGATACCTTCCATTCCAAGACGACAACATGGTGGCCATGTACAGGAAGATTTACAGAGGCGACTTCAAATGTCCGCCGTGGTTCTCCCCTGAAGCCCGTCGGCTCATCACGAAGCTGCTAGATCCAAATCCCGTGACCAGAGCCGGTATCACGAAGATTACATCCTCGTCTTGGTTCAAGAAATCGGTACCGAAAACTCTGATTAGGAAGGATGAACAAGAACAAACAGAGGAGAATTTCACAAAATCAAAGCCACCGGCGGAAACATTAAACGCGTTCCACATAATATCTCTATCGGAAGGGTTTGATCTGTCGCCACTGTTTGAAGAGAAGAAAAGGGAAGAGAAAGAGGAGATGAGATTCGCAACATCGTCGACGGCGAGCAGTGTGATATCGAAGCTCGAGGAAGTGGCGAAGGCGGTGAAGTTCGATGTGAAGAAGAGCGAAACACGGGTTCGATTGCAGGGGCAGGAGATGGGGAGAAAAGGGAAACTGACGATTGCGGCGGATATCTTTGCGATGACGCCGTCGTTTGTGGTGGTGGAGGTGAAGAAGGATAACGGAGATACATTGGAGTATAATCAGTTCTGCAGGAAGGAGCTCCGGCCGGCATTGAAGGACATTGTTTGGACTTCTCCGACGGGGAATTCGACACCAGCTTGA 1302 49.08 MADKGRDGGYSSLLDGKYELGRLLGHGTFAKVYHARNLRTGKSVAMKVVGKEKIIKVGMTEQIKREISVMKMVKHPNIVELHEVMASKSKIYFAMEFVRGGELFSKIAKGRLREDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDEDGNLKVTDFGLTAFSEHLKQDGLLHTTCGTPAYVAPEVIGKQGYDGAKADLWSCGVILYVLLAGYLPFQDDNMVAMYRKIYRGDFKCPPWFSPEARRLITKLLDPNPVTRAGITKITSSSWFKKSVPKTLIRKDEQEQTEENFTKSKPPAETLNAFHIISLSEGFDLSPLFEEKKREEKEEMRFATSSTASSVISKLEEVAKAVKFDVKKSETRVRLQGQEMGRKGKLTIAADIFAMTPSFVVVEVKKDNGDTLEYNQFCRKELRPALKDIVWTSPTGNSTPA 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27161860 27163708 + MELO3C004428.2.1 Cme05g01830 328893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01830 433 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g01830 433 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g01830 433 PANTHER - 10 430 - -
Cme05g01830 433 Gene3D Phosphorylase Kinase; domain 1 15 99 - -
Cme05g01830 433 Gene3D Transferase(Phosphotransferase) domain 1 100 298 - -
Cme05g01830 433 Gene3D Kinase associated domain 1, KA1 299 424 - -
Cme05g01830 433 CDD STKc_SnRK3 17 271 - -
Cme05g01830 433 Pfam NAF domain 301 360 IPR004041 GO:0007165
Cme05g01830 433 SUPERFAMILY Protein kinase-like (PK-like) 15 290 IPR011009 -
Cme05g01830 433 ProSiteProfiles NAF domain profile. 298 322 IPR018451 GO:0007165
Cme05g01830 433 CDD CIPK_C 304 419 - -
Cme05g01830 433 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 10 430 - -
Cme05g01830 433 SMART serkin_6 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g01830 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Cme05g01830 433 ProSitePatterns Protein kinases ATP-binding region signature. 24 51 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01678 Cme-Chr4:24090357 Cme05g01830 Cme-Chr5:27161860 5.55E-21 dispersed
Cme04g01728 Cme-Chr4:24822090 Cme05g01830 Cme-Chr5:27161860 9.38E-170 dispersed
Cme05g01830 Cme-Chr5:27161860 Cme12g01283 Cme-Chr12:20898876 0 dispersed
Cme11g01444 Cme-Chr11:21356838 Cme05g01830 Cme-Chr5:27161860 3.34E-155 dispersed
Cme05g01830 Cme-Chr5:27161860 Cme02g01072 Cme-Chr2:15744556 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64906 PF00069 Pkinase 7.30E-73 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01830 - K07198 csv:101208458 835.099