Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01846 ATGTGTGTGACGGATGCAGAGCAGGTTGGGACTGAGAGACCAAGTTCTGGGGTTAATAGTACCAAGCCATGGCCTATGCATTGTGAATTTTTGCAGAATCAGATGGGGAATCCTGATAAGGAGTCTGCTCTAACTGGAACTAGCGACCGAACTCGCTCTGGGAATTCTTTTCCTCTAGAAAGCATTTCTGAGGATGCTGCAGTTATAGACAAGAAGGAGAACCCAGCAACTTTTGCTCCAGCTCTTAGATCAGGAGAATGGTCTGACATTGGAAAGCGTCCTTATATGGAGGATACTCATGTATGCATTCATGACATGGCTAAGAAGTTTGGTTGTAGTTTTCTCAATGAGGAAGCTGTCTCCTTCTATGGTGTATTTGACGGACATGGAGGAAAAGGCGCTGCACAGTTTGTTCGTGACCACTTGCCAAGAGTCATTGTTGATGATTCCGACTTTCCTTTAGAGCTTGAAAAGGTTGTCACAAGGTCATTTATGGAGACTGATGCAGCTTTTGCTAGATCTTGCACTCTTGAAACATCTCTATCTTCTGGCACAACTGCACTTACCGCCATGATATTTGGAAGGTCTTTGCTTGTAGCAAATGCTGGCGATTGCCGAGCAGTACTATCAAGACAAGGATGTGCAGTAGAAATGTCTAAAGACCACAGGCCTTCCTGCACAAAAGAAAGAAAGCGAATCGAGGCCTTAGGCGGATTCATCGATGACGAAGATTACCTAAACGGTTTGCTCGGAGTTACACGTGCTATAGGAGATTGGCATCTTGAAGGAATGAAGGAAATGAGTGAAAGAGGTGGACCGTTAAGCGCAGAACCTGAACTTAGATTAATGACATTAACAAAGGAAGACGAGTTCTTGATCATAGGTAGCGATGGAATATGGGACGTCTTTACAAGTCAAAACGCCATTGATTTTGCTCGGAGGAAGCTCCAAGAACACAATGATGTGAAAATTTGCTGCAAGGAAATAGTAGAGGAAGCCATAAAGAGAGGAGCAACAGACAATTTAACAGTAGTATTGGTTAGCTTTCATTTGGAGCCTCCTCCACCTGTAGTTTTTCAAAGGCCAAGATTTAGAAGAAGCATTTCTGCTGAGGGACTTCAAAACCTCAAATGTCTTCTAGAAGGTTAG 1149 43.6 MCVTDAEQVGTERPSSGVNSTKPWPMHCEFLQNQMGNPDKESALTGTSDRTRSGNSFPLESISEDAAVIDKKENPATFAPALRSGEWSDIGKRPYMEDTHVCIHDMAKKFGCSFLNEEAVSFYGVFDGHGGKGAAQFVRDHLPRVIVDDSDFPLELEKVVTRSFMETDAAFARSCTLETSLSSGTTALTAMIFGRSLLVANAGDCRAVLSRQGCAVEMSKDHRPSCTKERKRIEALGGFIDDEDYLNGLLGVTRAIGDWHLEGMKEMSERGGPLSAEPELRLMTLTKEDEFLIIGSDGIWDVFTSQNAIDFARRKLQEHNDVKICCKEIVEEAIKRGATDNLTVVLVSFHLEPPPPVVFQRPRFRRSISAEGLQNLKCLLEG 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27268241 27273746 + MELO3C004439.2.1 Cme05g01846 328909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01846 382 CDD PP2Cc 83 349 IPR001932 -
Cme05g01846 382 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 1 370 - -
Cme05g01846 382 MobiDBLite consensus disorder prediction 1 57 - -
Cme05g01846 382 PANTHER PROTEIN PHOSPHATASE 2C 1 370 IPR015655 GO:0004722|GO:0006470
Cme05g01846 382 ProSiteProfiles PPM-type phosphatase domain profile. 83 349 IPR001932 -
Cme05g01846 382 SMART PP2C_4 73 347 IPR001932 -
Cme05g01846 382 SUPERFAMILY PP2C-like 76 350 IPR036457 -
Cme05g01846 382 ProSitePatterns PPM-type phosphatase domain signature. 122 130 IPR000222 GO:0043169
Cme05g01846 382 Gene3D - 65 352 IPR036457 -
Cme05g01846 382 MobiDBLite consensus disorder prediction 35 57 - -
Cme05g01846 382 Pfam Protein phosphatase 2C 95 341 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01846 Cme-Chr5:27268241 Cme07g00041 Cme-Chr7:257040 1.22E-107 dispersed
Cme06g01157 Cme-Chr6:8916370 Cme05g01846 Cme-Chr5:27268241 7.20E-25 dispersed
Cme07g00132 Cme-Chr7:859454 Cme05g01846 Cme-Chr5:27268241 6.01E-33 dispersed
Cme05g01846 Cme-Chr5:27268241 Cme01g02548 Cme-Chr1:33435260 6.47E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41376 PF00481 PP2C 1.80E-67 CL0238 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01846 K14803 - csv:101210349 739.569