Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01855 ATGGCTAATATTTCATTGGAAGATGTTAGAAACGAGAATGTTGATCTGGAGAGGATTCCAATTGAAGAGGTATTTGAGCAACTGAAATGCAATAGAAATGGTTTGTCATCTGATGAAGGAGAAAAAAGACTTCAAATCTTTGGCCCTAACAAACTTGAAGAGAAAAAAGAGAGCAAATTCCTCAAGTTTTTAGGGTTCATGTGGAATCCCCTTTCATGGGTCATGGAGTGTGCTGCTATCATGGCTATTGTCTTGGCCAATGGAGGGGGAAAGCCTCCAGACTGGCAAGATTTTGTTGGAATAGTGGTGTTACTCATTATCAACTCCACGATTAGTTTTATTGAAGAGAACAATGCAGGAAATGCAGCTGCTGCTCTAATGGCAGGACTTGCTCCCAAAACCAAGGTTTTGAGAGATGGAAAATGGAGTGAGGAAGAGGCAGCTATTTTAGTACCAGGAGACTTAATCAGTATTAAGTTGGGAGATATTGTCCCTGCTGATGCAAGACTCTTGGAAGGAGATCCTCTTAAGATCGATCAATCCGCTCTCACTGGCGAATCTTTGCCAGTTACTAAGAACCCAGGCGATGAGGTTTTCTCTGGCTCGACTTGTAAACAAGGAGAAATTGAGGCTATTGTTATTGCCACTGGTGTCCATACCTTTTTTGGCAAGGCAGCTCATCTTGTTGATAGCACCAACCAAGTTGGTCATTTCCAAAAGGTATTGACAGCCATTGGTAACTTTTGCATTTGCTCCATTGCTATTGGGATGCTCATTGAGATCTTAGTGATGTACCCAATCCAAAATAGGGCATACAGAGAGGGAATTGATAACTTGCTGGTTCTTCTCATTGGTGGCATTCCAATTGCCATGCCGACTGTATTGTCAGTGACCATGGCTATTGGTTCTCACCGTCTAGCGGAGCAAGGTGCTATCACCAAAAGAATGACAGCCATTGAAGAAATGGCAGGAATGGATGTACTTTGCAGTGACAAAACTGGAACTCTCACCCTCAACAAGCTGACGGTGGACAAAAGTTTGATTGAAGTATTTTCAAAGAATACTGATGCAGACACATTACTTCTATTGGCTGCAAGAGCTTCAAGAGTGGAGAACCAGGATGCCATTGATGCTTCGATTGTCGGGATGTTGGGTGATCCTAAAGAGGCAAGATCAGGGATCACTGAGGTACATTTCTTGCCTTTCAATCCTGTTGAGAAGCGCACTGCTATCACCTATATTGATAGTAATGGAAACTGGCACAGAAGCAGCAAGGGTGCTCCCGAACAGATCATCGACCTTTGTGACCTCAAAGGGGAAAGAAGGAAGAAAGCTCATAATATTATCAGCAATTATGCAGACCGTGGTCTTCGTTCTCTAGCTGTCGCACGCCAGACGGTTCTAGAGAAGACTAAGGAGAGTAGTGGAGAACCATGGGACTTTGTGGGCTTGTTGCCCCTCTTTGATCCTCCAAGGCATGATAGTGCAGAGACTATTCGTCGGGCACTCGAACTTGGGGTAAATGTTAAGATGATCACTGGAGATCAATTGGCCATTGGAAAAGAAACCGGTCGCAGGCTCGGTATGGGAACCAATATGTATCCATCATCTTCCTTACTTGGTCAAAGCAAGGATGAAGCAATTGCTAGCATTCCTGTTGAAGAACTTATTGAGAAGGCGGATGGTTTTGCTGGTGTCTTCCCAGAACACAAGTATGAGATTGTGAAAAAGCTCCAAGAGAGGAAGCACATTTGTGGGATGACCGGTGATGGCGTCAACGATGCCCCCGCACTCAAGAAGGCTGACATTGGAATTGCTGTAGCTGATGCAACAGATGCAGCAAGGAGTGCATCAGATATTGTTTTAACGGAACCAGGTCTAAGCGTGATCGTGAGTGCAGTTCTAACAAGTAGAGCCATTTTTCAAAGGATGAAAAACTACACAATCTATGCAGTTTCCATCACGATTCGAATCGTGTTAGGTTTCTTGCTTGTAGCTCTATTATGGAAGTTTGACTTCTCACCTTTCATGGTCTTGATTATTGCCATCTTGAATGATGGAACCATCATGACCATCTCCAAGGATAGGGTGAAGCCATCTCCTGTGCCTGATTCATGGAAGCTAAACGAAATTTTTGCCACCGGTGTTGTTCTCGGAACATACATGGCTGTCATGACTGTGGTCTTCTTTTGGCTAGCATATCAGACTGATTTTTTTCCAAAAACATTTGGGGTGAAGCACATCAATGAAAATCTAGCTGAGCTTAACTCTGCTCTTTACCTCCAAGTGAGCATCATTAGCCAAGCCCTCATCTTTGTGACACGATCGAGGAGTTGGTCCTTTGTAGAACGCCCCGGTCTTTTGCTAGTTGGAGCCTTCCTAATAGCTCAGCTTTTGGCAACTGTCATCGCTGTGTATGCCGAATGGGACTTTGCTAGGATTCACGGCATTGGTTGGGGATGGGCAGGAGTGATCTGGATTTACAGCATCATCACATACCTCCCTCTTGATGTACTCAAGTTCATTATCCGCTATGCATTGAGTGGGAAGGCCTGGGATAATATGCTTCAAAACAAGACTGCATTCACAACTAAGAAGGATTATGGAAAAGGAGAAAGGGAGGCACAATGGGCATTAGCACAACGTACACTACACGGCTTACAAAAACCGGAAGCGCTATTTAGTGACACAAGTAGCTACCGGGAGCTTTCCGAGATAGCAGAACAAGCAAAGAGAAGAGCTGAAGTTGCCAGGATGAGTCAGAATGTATGA 2772 44.3 MANISLEDVRNENVDLERIPIEEVFEQLKCNRNGLSSDEGEKRLQIFGPNKLEEKKESKFLKFLGFMWNPLSWVMECAAIMAIVLANGGGKPPDWQDFVGIVVLLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEEEAAILVPGDLISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKNPGDEVFSGSTCKQGEIEAIVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAIGMLIEILVMYPIQNRAYREGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLAEQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSLIEVFSKNTDADTLLLLAARASRVENQDAIDASIVGMLGDPKEARSGITEVHFLPFNPVEKRTAITYIDSNGNWHRSSKGAPEQIIDLCDLKGERRKKAHNIISNYADRGLRSLAVARQTVLEKTKESSGEPWDFVGLLPLFDPPRHDSAETIRRALELGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQSKDEAIASIPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFLLVALLWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPVPDSWKLNEIFATGVVLGTYMAVMTVVFFWLAYQTDFFPKTFGVKHINENLAELNSALYLQVSIISQALIFVTRSRSWSFVERPGLLLVGAFLIAQLLATVIAVYAEWDFARIHGIGWGWAGVIWIYSIITYLPLDVLKFIIRYALSGKAWDNMLQNKTAFTTKKDYGKGEREAQWALAQRTLHGLQKPEALFSDTSSYRELSEIAEQAKRRAEVARMSQNV 923
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27319766 27325567 + MELO3C004447.2.1 Cme05g01855 328918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01855 923 Gene3D - 132 216 - -
Cme05g01855 923 Pfam E1-E2 ATPase 131 309 - -
Cme05g01855 923 SUPERFAMILY Calcium ATPase, transduction domain A 132 229 IPR008250 -
Cme05g01855 923 SFLD p-type atpase 311 640 IPR044492 -
Cme05g01855 923 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 563 669 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme05g01855 923 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 101 359 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme05g01855 923 Pfam Cation transporter/ATPase, N-terminus 19 81 IPR004014 -
Cme05g01855 923 CDD P-type_ATPase_H 34 841 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cme05g01855 923 Gene3D - 94 815 - -
Cme05g01855 923 PANTHER CALCIUM-TRANSPORTING ATPASE 1 920 - -
Cme05g01855 923 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 34 806 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cme05g01855 923 Gene3D - 898 922 - -
Cme05g01855 923 Gene3D - 341 488 IPR023299 GO:0000166
Cme05g01855 923 SUPERFAMILY HAD-like 325 635 IPR036412 -
Cme05g01855 923 ProSitePatterns E1-E2 ATPases phosphorylation site. 331 337 IPR018303 -
Cme05g01855 923 PANTHER PLASMA MEMBRANE ATPASE 1 920 - -
Cme05g01855 923 Pfam haloacid dehalogenase-like hydrolase 325 602 - -
Cme05g01855 923 PRINTS H+-transporting ATPase (proton pump) signature 445 463 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme05g01855 923 PRINTS H+-transporting ATPase (proton pump) signature 560 576 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme05g01855 923 PRINTS H+-transporting ATPase (proton pump) signature 588 604 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme05g01855 923 PRINTS H+-transporting ATPase (proton pump) signature 619 644 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme05g01855 923 PRINTS H+-transporting ATPase (proton pump) signature 760 781 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme05g01855 923 SFLD C1.7: P-type atpase like 311 640 - -
Cme05g01855 923 Coils Coil 900 920 - -
Cme05g01855 923 SUPERFAMILY Calcium ATPase, transmembrane domain M 14 847 IPR023298 -
Cme05g01855 923 Gene3D - 326 625 IPR023214 -
Cme05g01855 923 SMART Cation_ATPase_N_a_2 15 87 IPR004014 -
Cme05g01855 923 PRINTS P-type cation-transporting ATPase superfamily signature 179 193 - -
Cme05g01855 923 PRINTS P-type cation-transporting ATPase superfamily signature 329 343 - -
Cme05g01855 923 PRINTS P-type cation-transporting ATPase superfamily signature 483 494 - -
Cme05g01855 923 PRINTS P-type cation-transporting ATPase superfamily signature 505 515 - -
Cme05g01855 923 PRINTS P-type cation-transporting ATPase superfamily signature 588 607 - -
Cme05g01855 923 PRINTS P-type cation-transporting ATPase superfamily signature 611 623 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01691 Cme-Chr3:25617688 Cme05g01855 Cme-Chr5:27319766 0 dispersed
Cme04g00340 Cme-Chr4:2711497 Cme05g01855 Cme-Chr5:27319766 0 dispersed
Cme05g01344 Cme-Chr5:22344900 Cme05g01855 Cme-Chr5:27319766 0 dispersed
Cme05g01855 Cme-Chr5:27319766 Cme12g01744 Cme-Chr12:24163351 0 dispersed
Cme12g00230 Cme-Chr12:2597422 Cme05g01855 Cme-Chr5:27319766 1.74E-60 dispersed
Cme09g01752 Cme-Chr9:22014667 Cme05g01855 Cme-Chr5:27319766 2.72E-24 transposed
Cme02g01087 Cme-Chr2:15883040 Cme05g01855 Cme-Chr5:27319766 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01855 K01535 - csv:101211582 1729.15