Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01856 ATGTCGGGCTGGGATGAAGGAGGAATCTACTACAGTGACCAAGCACAATCCCTTGGTGACGGAACCGGCATCGGCCGAAGCGGAGATGCCGACGACAAGGCCACTCATCACTCCGTCCTTCGCAAATTCAAGGAGTTCATTCGTGGGTTTGAAGCCGACAAGAATGTTTTCCCTTATAGAGAAAGCCTTCTCCATAATCCCAAGTTTCTTCGCGTTGATATGGAGGATGTTAACGCTTTTGACTCCGATCTTCCGGCAAAGCTTCGATCTGCTCCTGCTGATTTCTTGCCCTTGTTTGAGACTGCTGCTGGGGAGGTTTTAAGGAATCTGAAGACGAAGGTGGCTGGTGAGACTGGAGAAATGGTGGAGCCAGTGCCTGGTGATGTTCAAATTCTGCTAACGTCGAAGGAGGATCCGGTTTCAATGCGGTCCCTTGGGGCACAGTACATTTCGAAACTTGTTAAAATATCTGGAATCACAATAGCTGCGTCAAGGACCAAGGCAAAGGCAACATATGTGACCTTGATTTGTAAAAACTGTAGAAGTACAACACGAGTTCCGTGTCGGCCAGGACTTGGAGGGGCAATTGTCCCTCGATCATGTACTCATGTTCCTCAGCCTGGAGAAGAACCATGCCCACTAGATCCCTGGATTGTGGTTCCTGACAAGAGCATGTATGTTGATCAACAGACTCTAAAACTGCAGGAAAACCCAGAAGATGTCCCAACTGGGGAACTTCCTAGGAACATGCTTCTATCAGTAGATCGTCATCTTGTTCAAACAATTGTCCCAGGCACTAGATTGACCATCATGGGGATATACAGTATCTACCAAGCTTCCAATTCTTCTACATCTCACAAAGGGGCAGTTGCAATCAGACAGCCTTATATCAGGGTTGTAGGCATTGAAGAATGTAATGAAACTAACTCCCGGGGACCTGCATCCTTCACAACCGAAGATATAGAAGAGTTCAAAAAATTTGCAGCAGAGCCTGATGTCTATAAAAGCATATGTTCAAAGATTGCTCCCTCTATATTTGGTCACGATGATGTGAAGAAGGCCGTGGCTTGTCTTCTATTTGGAGGATCCAGGAAGAATTTGCCAGATGGGGTTAAGTTGAGAGGTGACATAAATGTATTACTCTTGGGGGACCCGTCTACAGCAAAATCCCAGACAGCTCCAGTTGCTGTTTATACTTCTGGAAAAGGTTCATCAGCTGCTGGTCTTACAGCTTCAGTGATACGAGATAGCAGCTCTCGAGAGTTTTATCTTGAAGGAGGTGCAATGGTTTTGGCTGATGGAGGTGTTGTCTGCATTGATGAGTTTGACAAAATGAGATCAGAGGATAGAGTTGCTATTCATGAAGCCATGGAACAACAAACAATATCAATTGCTAAAGCAGGAATAACAACGGTTCTTAATTCCAGAACGTCAGTGCTTGCTGCTGCTAATCCTCCATCAGGACGCTATGATGATCTTAAGACAGCACAGGATAACATCGATTTACAGACAACAATTCTCTCCAGATTTGATTTGATCTTTATCGTTAAAGATATAAGAATGTACAGTCAAGATAAGATTATAGCAAGCCACATAATAAAAGTCCATGCGTCTGCTGGTGCAACCTTGGGTGAAAATAGAGCTTCCAAAGAAGAGAATTGGCTAAAGAGGTATATTCAATATTGTCGAACTCAATGTTATCCCCGTTTGTCAGAATCTGCATCTACAATGCTACAGAATAACTATGTTAAAATCAGACAGGACATGAGACAACAAGCAAATGAAACAGGGGAGGCTGCTGCAATTCCTATCACAGTAAGGCAGCTGGAAGCTATTGTAAGATTAAGCGAGGCACTTGCAAAAATGAAGTTGTCCCATGTTGCCACTGAGGAAAATGTGCAGGAAGCTATTAGACTTTTTACCGTATCAACGATGGACGCAGCACGCTCTGGGATTCATCAGCAAGTAAATCTGACTCCTGAGATTGCCAATGAAATAAAGGTTGGTCCAATACACAACCACAACACTGATTCTCCTTTCCTTCAAGCGGAAACTCAGATAAAGAGAAGAATAGGAATTGGCAATCACATATCTGAGAGAAGACTGATTGACGAGCTTGCCAAAATGGGGATGAACGAGTCAATTGTGAGAAGAGCTCTGATTATCATGCACCAGAGAGACGAAGTTGAATATAAAAGAGAAAGGCGTGTAATTTTCCGCAAGGCATAA 2229 43.88 MSGWDEGGIYYSDQAQSLGDGTGIGRSGDADDKATHHSVLRKFKEFIRGFEADKNVFPYRESLLHNPKFLRVDMEDVNAFDSDLPAKLRSAPADFLPLFETAAGEVLRNLKTKVAGETGEMVEPVPGDVQILLTSKEDPVSMRSLGAQYISKLVKISGITIAASRTKAKATYVTLICKNCRSTTRVPCRPGLGGAIVPRSCTHVPQPGEEPCPLDPWIVVPDKSMYVDQQTLKLQENPEDVPTGELPRNMLLSVDRHLVQTIVPGTRLTIMGIYSIYQASNSSTSHKGAVAIRQPYIRVVGIEECNETNSRGPASFTTEDIEEFKKFAAEPDVYKSICSKIAPSIFGHDDVKKAVACLLFGGSRKNLPDGVKLRGDINVLLLGDPSTAKSQTAPVAVYTSGKGSSAAGLTASVIRDSSSREFYLEGGAMVLADGGVVCIDEFDKMRSEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDIRMYSQDKIIASHIIKVHASAGATLGENRASKEENWLKRYIQYCRTQCYPRLSESASTMLQNNYVKIRQDMRQQANETGEAAAIPITVRQLEAIVRLSEALAKMKLSHVATEENVQEAIRLFTVSTMDAARSGIHQQVNLTPEIANEIKVGPIHNHNTDSPFLQAETQIKRRIGIGNHISERRLIDELAKMGMNESIVRRALIIMHQRDEVEYKRERRVIFRKA 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27326640 27332555 - MELO3C004448.2.1 Cme05g01856 328919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01856 742 Pfam MCM OB domain 142 277 IPR033762 -
Cme05g01856 742 Pfam MCM AAA-lid domain 554 643 IPR041562 -
Cme05g01856 742 SMART mcm 138 645 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cme05g01856 742 Pfam MCM P-loop domain 320 536 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme05g01856 742 PRINTS Mini-chromosome maintenance (MCM) protein family signature 479 491 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme05g01856 742 PRINTS Mini-chromosome maintenance (MCM) protein family signature 506 514 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme05g01856 742 PRINTS Mini-chromosome maintenance (MCM) protein family signature 455 468 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme05g01856 742 PRINTS Mini-chromosome maintenance (MCM) protein family signature 427 441 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme05g01856 742 PRINTS Mini-chromosome maintenance (MCM) protein family signature 374 389 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme05g01856 742 Gene3D - 142 277 IPR012340 -
Cme05g01856 742 ProSitePatterns MCM family signature. 435 443 IPR018525 GO:0003677|GO:0005524|GO:0006260
Cme05g01856 742 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 293 305 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Cme05g01856 742 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 143 158 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Cme05g01856 742 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 169 181 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Cme05g01856 742 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 638 655 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Cme05g01856 742 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 562 577 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Cme05g01856 742 PANTHER DNA REPLICATION LICENSING FACTOR MCM5 63 667 - -
Cme05g01856 742 Gene3D - 169 227 - -
Cme05g01856 742 Pfam MCM N-terminal domain 41 112 IPR027925 -
Cme05g01856 742 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 63 667 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cme05g01856 742 ProSiteProfiles MCM family domain profile. 333 532 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme05g01856 742 Gene3D - 314 661 IPR027417 -
Cme05g01856 742 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 343 644 IPR027417 -
Cme05g01856 742 SUPERFAMILY Nucleic acid-binding proteins 42 299 IPR012340 -
Cme05g01856 742 Gene3D - 31 122 - -
Cme05g01856 742 CDD MCM5 337 643 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02557 Cme-Chr4:31709004 Cme05g01856 Cme-Chr5:27326640 1.92E-86 dispersed
Cme05g01856 Cme-Chr5:27326640 Cme08g00004 Cme-Chr8:38932 8.83E-95 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01856 K02209 - csv:101211822 1407.51