Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01875 ATGGAGGAGAATGAAAACTGTGGGTGTTGGGCAGTCCTTAAACGCACCGTTTCCGATGTTTCCAAATCTTCTCCTTCTTCTAAACATTCTCCCAACTCCATTCCTCGCCTTACTTTGCTTTACGATTCAGCTACCGAGACCCGATACTTAAACGCAAGCGACCGAGATTTCTGTGCGCCAGCCGAACCTCGGCTATCCTTCGACAATGCTCCGTTGCCGACGAGGTTGGAGGACAAATATAAACCCCAGTTGCTGAAATTTTCATTTCAGGAACTAAGATCGGCGACCGGGAATTTCCGGCCAGATAGCATTCTCGGAGAAGGAGGGTTTGGATTCGTTTTCAAAGGATGGATTGAAGAGAATGGGACGGCGCCGGCGAAACCTGGATCGGGAATCACTGTCGCCGTTAAAAGCTTGAAACCGGATGGTCTTCAAGGACACAGAGAATGGGAGGCTGAGGTTAGTTTTCTTGGACAGCTTCATCATCCTAATCTTGTTAAACTTATTGGATATTGTATTGAAGATGATCAAAGGCTTCTTGTATATGAATTTATGACGCGTGGTAGTCTTGAAAATCATCTTTTCAGAAGGACTATACCTCTTCCATGGTCAAACAGGATTAAAATTGCACTTGCTGCAGCCAAAGGCTTGGCCTTCCTCCACAATGGTCCAGAACCTGTCATATATAGAGATTTCAAAACATCAAACATATTGCTTGATACGGAGTACAATGCGAAGCTTTCGGATTTTGGTTTGGCAAAGGCTGGGCCTCAAGGAGACAAAACACATGTTTCCACCAGAGTAGTTGGAACATATGGCTATGCTGCACCAGAATATCTAATGACAGGGCATTTGACTTCAAAGAGTGATGTTTATAGCTTTGGCGTTGTCCTACTCGAGATCTTAACAGGAAGGAGATCAATGGACAAGAAACGTCCAAGTGGTGAACAGAACCTAGTGTCATGGGCTAGGCCATATTTAGATGACAAAAGGAAGCTTTACCATATAGTGGACCCTCGTTTGGAGCTTAACTACTCCATCCAGGGCGTTCAAAAAGTCTCTCGACTTGCTTCTCACTGTATCAGTAGAGATCCAAAATCTCGTCCTACCATGGATGAAGTTGTCAAGGTTCTCGTTCCTCTACAAGACCTTAACGACCTTGCCATCCTAGCATATCATTCGCGCTTGTCTCAGCAAGGTCGTCGAAAGAAGAAATCAGATGGACTGCACCAGTTAACATACACTCAATCAAGAAATATTAGAACCTCTCCTTTGAATATCAGCCAGAGAGCAAGAGATGGAAGAGGGAAAGACTCAATAAAGCCTTCTACAATAATAGATGAAGTTACTTTCCAACAAGAGCTACGGAAAGGCTCTTTGGTAGATGAAATTGTGAACATTGCTGCTATATCATATATAAACGTTGTTAAGTTTCTTTCTGTTCTAGAGGGGAGAAGGGAGAAAACAACTCATTCTGTTGCTGCGCTTTGA 1491 43.73 MEENENCGCWAVLKRTVSDVSKSSPSSKHSPNSIPRLTLLYDSATETRYLNASDRDFCAPAEPRLSFDNAPLPTRLEDKYKPQLLKFSFQELRSATGNFRPDSILGEGGFGFVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWEAEVSFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRRTIPLPWSNRIKIALAAAKGLAFLHNGPEPVIYRDFKTSNILLDTEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYLMTGHLTSKSDVYSFGVVLLEILTGRRSMDKKRPSGEQNLVSWARPYLDDKRKLYHIVDPRLELNYSIQGVQKVSRLASHCISRDPKSRPTMDEVVKVLVPLQDLNDLAILAYHSRLSQQGRRKKKSDGLHQLTYTQSRNIRTSPLNISQRARDGRGKDSIKPSTIIDEVTFQQELRKGSLVDEIVNIAAISYINVVKFLSVLEGRREKTTHSVAAL 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27517207 27522533 - MELO3C004463.2.1 Cme05g01875 328938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01875 496 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Cme05g01875 496 Gene3D Transferase(Phosphotransferase) domain 1 185 394 - -
Cme05g01875 496 ProSiteProfiles Protein kinase domain profile. 99 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g01875 496 Gene3D Phosphorylase Kinase; domain 1 74 184 - -
Cme05g01875 496 PANTHER OS01G0588500 PROTEIN 79 406 - -
Cme05g01875 496 CDD STKc_IRAK 105 381 - -
Cme05g01875 496 Pfam Protein tyrosine and serine/threonine kinase 103 378 IPR001245 GO:0004672|GO:0006468
Cme05g01875 496 PANTHER OS01G0588500 PROTEIN-RELATED 79 406 - -
Cme05g01875 496 SUPERFAMILY Protein kinase-like (PK-like) 80 382 IPR011009 -
Cme05g01875 496 ProSitePatterns Protein kinases ATP-binding region signature. 105 137 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01178 Cme-Chr2:16944513 Cme05g01875 Cme-Chr5:27517207 0 dispersed
Cme05g01875 Cme-Chr5:27517207 Cme09g00290 Cme-Chr9:2307388 1.92E-154 dispersed
Cme05g01875 Cme-Chr5:27517207 Cme10g00446 Cme-Chr10:2831318 8.37E-177 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64908 PF07714 PK_Tyr_Ser-Thr 1.20E-48 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01875 - - csv:101217498 840.876