Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01882 ATGGCACTTGCCGATTCATCCAATGGCGATGAAGAATCCATCATCACTCCCTTGCTTGCTCAGAAATCGCTTGCCAATTCTTCCTCACAGGTTGCTATTGTTGGAGCTAATGTTTGCCCCATTGAGAGCCTTGATTACGAGATTTTTGATAATGAGTGCTTCATGCAAGATTGGAGGAGTCGTGGGGATTTCCAGATATTTCAATACTTGGTTATGAAGTGGCTTTCATGCTTCTTGATTGGTTTGATTATGGGTCTTGTTGGATTTTTTAATAACCTGGCGGTGGAGAATATTGCAGGGAAGAAGTTTGTGGTCACTTCGAATATGATGCTCGAGGGCAGGTATGGGATGGCTTTTCTTGTTTTCTCTGTTTCCAATTTAGTTCTCACCCTATTCGCATCTGTCATTACGGCATTGATCTGTCCCCAAGCAGCTGGCTCAGGTATACCAGAAGTAAAGGCTTATCTGAATGGCGTGGATGCCCCTGGAATACTATCGCCTCGGACGCTGTTAGTGAAGATCGTTGGCAGCATTTCTATTGTGTCATCATCGATGATTGTTGGAAAAGCTGGGCCTATGGTACATACAGGGGCATGCGTTGCATCCTTGGTAGGTCAGGGGGGTTTCAAAATATTTGGCTCAACATGGAGATGGCTATACCTTCTCAAGAATGATCGAGATAGGCGGGATCTTGTAACATGTGGAGCTGCTGCTGGAATAGCTGCTTCTTTTCGTGCTCCTGTTGGTGGTGTGTTATTTGCTTTTGAAGAGATGGCATCCTGGTGGAGAAGTGCTCTTCTGTGGCGATCGTTTTTCACAACGGCTGTAGTTGCTGTGGTACTACGCTCACTGATTGACATGTGTTTAAATGGATTATGTGGATTATTTGGTAAAGGGGGACTTATAATATTTGATACCTACTCAGACTTTCCTACATATCACCTTGAAGATCTACCTCCTGTGCTTGTTCTTGCTTTTATTGGAGGCATACTTGGAAGCTTATATAATTTTCTTTTGAACAAATTTCTTCGCATTTATAATTTCATACACGAGAAAGGTATTATTTACAAAATTTTACTGGCTTGCACGGTCTCAATTTTCACATCCTTCCTTCTTTTTGGATTACCATGGTTCGCGTCGTGCCAACCTTGCCCATCAAGTGCTCGAGAAATTTGTCCTACCATAGGTCGATCTGGTAACTTCAAGAAGTTTCAGTGTGCTCCTGATCACTACAATGATCTTGCAAGTCTCATATTTAACACCAATGATGATGCCATAAAAAATCTCTTTAGCAAGGACACGGACTCCGAGTTCCAGTTGTCATCAATGCTCACATTTTTTGTTACCTGTTTTTCCTTGAGCATTCTAAGTTATGGGACAGTTGCTCCTGTTGGCTTGTTTGTCCCTGTTATTGTGACTGGAGCTTCTTATGGTCGTTTCGTCGGAATGGTTGTCGGTCCACACACGAACCTAAGCCATGGCTTCTTTGCCATATTAGGCGCTGCTTCATTTCTCGGGGGGACGATGAGGACAACAGTTTCTCTCTGTGTTATTATGCTTGAATTGACCAATAATTTGTTGTTGTTGCCTTTAATAATGTTGGTTCTTCTTATTTCCAAGACCGTAGCTGATGCTTTCAACAGTAATATATATAACTTGATCATGAAAGCGAAAGGATTTCCTTATCTAGAAGGCCATGTTGAGCCATACATGAGGCAGCTCAAAGTTGCTGATGTATTAACGAGTCCACTTCAATTATTGAATGGCATTGAGAAGGTTTGCAATGTAGTAAACGTTCTCCGTATGACGAGCCATCATGGATTTCCCATCATTGACGAACCTCCTTTCTCCGAATTCCCTATTTTATATGGTCTAGTTCTCAGAACCCACCTTATCATGTTGTTAAAGAAGAAAGCTTTCTTGTCCGTTCCAATACCAGGATCGGAAATACAAGATCCTTGTAAGCTATTCTCAGCTGATGATTTCGCAAAGATGGGTTCGGGTTATGTTGAAAGGATTGAAGATGTACAATTGACTGATGAAGAGATGGAGATGTTCATTGATCTACATCCGTTTGCTAATCCTTCACCTTGTACTGTCTTGGAGACCACGTCACTTGCAAAGGCTCTTGAAATTTTTCGAGAAACTGGTTTAAGACACATGTTGGTGATACCCAAGGTCCCTGGGAGATCGCCCGTGGTTGGTGTATTGACTCGGCATGACTTTATGCCAGATTACATTCTCAGTTTGCATCCAATGCTGGAGAAAAGCAGATGGAAAAGGTTAAGAATCAAATTTCACCTGAAGAAAAAATTCTTCTAG 2322 42.03 MALADSSNGDEESIITPLLAQKSLANSSSQVAIVGANVCPIESLDYEIFDNECFMQDWRSRGDFQIFQYLVMKWLSCFLIGLIMGLVGFFNNLAVENIAGKKFVVTSNMMLEGRYGMAFLVFSVSNLVLTLFASVITALICPQAAGSGIPEVKAYLNGVDAPGILSPRTLLVKIVGSISIVSSSMIVGKAGPMVHTGACVASLVGQGGFKIFGSTWRWLYLLKNDRDRRDLVTCGAAAGIAASFRAPVGGVLFAFEEMASWWRSALLWRSFFTTAVVAVVLRSLIDMCLNGLCGLFGKGGLIIFDTYSDFPTYHLEDLPPVLVLAFIGGILGSLYNFLLNKFLRIYNFIHEKGIIYKILLACTVSIFTSFLLFGLPWFASCQPCPSSAREICPTIGRSGNFKKFQCAPDHYNDLASLIFNTNDDAIKNLFSKDTDSEFQLSSMLTFFVTCFSLSILSYGTVAPVGLFVPVIVTGASYGRFVGMVVGPHTNLSHGFFAILGAASFLGGTMRTTVSLCVIMLELTNNLLLLPLIMLVLLISKTVADAFNSNIYNLIMKAKGFPYLEGHVEPYMRQLKVADVLTSPLQLLNGIEKVCNVVNVLRMTSHHGFPIIDEPPFSEFPILYGLVLRTHLIMLLKKKAFLSVPIPGSEIQDPCKLFSADDFAKMGSGYVERIEDVQLTDEEMEMFIDLHPFANPSPCTVLETTSLAKALEIFRETGLRHMLVIPKVPGRSPVVGVLTRHDFMPDYILSLHPMLEKSRWKRLRIKFHLKKKFF 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27586544 27597505 - MELO3C004469.2.1 Cme05g01882 328945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01882 773 Pfam CBS domain 697 742 IPR000644 -
Cme05g01882 773 PANTHER CHLORIDE CHANNEL PROTEIN 10 765 - -
Cme05g01882 773 PRINTS Plant CLC chloride channel signature 47 55 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cme05g01882 773 PRINTS Plant CLC chloride channel signature 258 266 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cme05g01882 773 PRINTS Plant CLC chloride channel signature 272 282 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cme05g01882 773 PRINTS Plant CLC chloride channel signature 290 297 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cme05g01882 773 PRINTS Plant CLC chloride channel signature 414 430 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cme05g01882 773 SUPERFAMILY Clc chloride channel 51 565 IPR014743 -
Cme05g01882 773 CDD CBS_pair_voltage-gated_CLC_euk_bac 576 745 - -
Cme05g01882 773 Pfam Voltage gated chloride channel 130 544 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cme05g01882 773 ProSiteProfiles CBS domain profile. 693 753 IPR000644 -
Cme05g01882 773 PRINTS Chloride channel signature 142 159 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cme05g01882 773 PRINTS Chloride channel signature 173 192 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cme05g01882 773 PRINTS Chloride channel signature 237 256 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cme05g01882 773 PRINTS Chloride channel signature 462 482 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cme05g01882 773 PRINTS Chloride channel signature 494 510 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cme05g01882 773 PRINTS Chloride channel signature 512 531 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cme05g01882 773 PRINTS Chloride channel signature 550 564 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cme05g01882 773 Gene3D - 564 744 IPR046342 -
Cme05g01882 773 Gene3D Clc chloride channel 65 563 - -
Cme05g01882 773 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 10 765 - -
Cme05g01882 773 SUPERFAMILY CBS-domain pair 566 743 IPR046342 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00139 Cme-Chr3:1825338 Cme05g01882 Cme-Chr5:27586544 0 dispersed
Cme05g00272 Cme-Chr5:1996539 Cme05g01882 Cme-Chr5:27586544 3.24E-176 dispersed
Cme05g01882 Cme-Chr5:27586544 Cme06g02178 Cme-Chr6:27765433 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01882 K05016 - csv:101216071 1434.47