Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01902 ATGACTGTGGAGGTTCGAAAGACTAATTTAGTTGGTGAAAATGATGATATGGAGCAGTTTCCTATTGGTATGCGTGTTCTTGCTGTAGATGATGACCCCATTTGCCTTAAGGTTTTGGAGAATTTGCTTCGTAAATGTCAATATCATGTTACAACGACCAATCAGGCAGTTCAGGCACTTAAAATGTTGAGGGAGAACAAAAACAGGTTTGACCTGGTTATCAGCGATGTTAACATGCCCGACATGGATGGTTTTAAGCTCCTTGAGCTAGTAGGCCTTGAAATGGACCTACCTGTTATAATGTTGTCTGCGCATAGCAATACTGAACTCGTAAAGAAGGGAGTTATTCATGGTGCATGCGACTATTTGCTGAAACCTGTTCGAATTGAAGAACTGAAGAATATATGGCAACATGTCCTTCGGAGAAAGAAACCTTCTGTTAAGAACCAAAATAAGAGCATTAATGGAAATAACACTAGTCAAGGTGTTGAAGTTGCAAAAGGTTGTCCACCTGCAGTCAGTACTGATAACGAGAAATCTGGTAAAAGACAGAAAGACCAAGATGATGACGAGGAAGGAGGTGAAGAAGACAGTACTTACGAGAATGACGATTCCTCCACCCAAAAAAAGCCAAGAGTAAATTGGTACGATGGAGATGAGAATTTGCACAGGAAGTTTGTGGCAGCTGTTAACATTTTGGGCTATGAAAAGGCTGTTCCCAAGAAGATCCTTGATCTGATGAATGTTGAAGGACTTACAAGAGAAAATGTGGCCAGCCATCTTCAGAAATACAGACAATACCTTAAAAAACTCTGTAGTGAGGAAGCTCAGCAATGTAACAAGATGGGCGCATTTGGAGGTAAGCACACCTTCTTCAGGCCCATGGCATCACTCAATGGATTTTCAATGACTGGAACAGGAAGGCTCTCTAATGCAACATTCTCGCAGTATCCCTCTCGAGAAATAGTTGGTCAATTAAACTCTACTGCTGGATTGAGCTTAAATGATATTGCTTCCTCTGGAATGATCCAGTCCCATAAATTGAGTAACTCATTAAGTATCATTGGGAAACCCCATCCAGCTTTCTTCCATACAAACCAACCTCCGCACACATTCAATGGCATTTCAATGTCATCGGATCACATTCAGTTACACAGAGACAAACGCACTCTGTCATTTAAAGAGTCTAATTTGATAAATGATGCCTCAAGTTTTACAGTTTCCACCAGCTTCCCCGATGCTAGAATGGCTGTTGGTAGCTCAAGCAATTATGATTTCGGTGTTTCAAGCAATTCGTTGATATTACGAGGACATAAGCAACAGATTCATGGCGATGGAGAATTCGGAGGGCAGTCTTCTCTTAAGGTAACTCTAGACAACCAAGAACCGTTAGACAGCGGCACAGGTGTTTCTAATATTTTGGGGCACAGTCAGTCTAACAAAAACTGGCCGAGTTCAATCCAGCTCCCCAAATTTTCATCTAGTGTCTCAGTCACTGGAATTTACCCTCCTGATGGAATGCCCGCTACTTATTTGACAATTTCCTCGGATCAGCCCGATCACGACAACTTTCCTATTGGCTTTCCTTCAACAAGTGGGGATTCAAGTTCTCAGCTTGATTTAAGAGGGGACACACAATGCTATGAAGAACTAATTGGTAGTGTTGTTGAAGCGACGAATGGTAGATCAAAACAACAATGGGAAGCAGCTAAACAGGATTACTATAGCAACCATAGTTCCATTGTGAGGGACTCTTTAGTTTCTGGGAATAGTGTTGCAGATCCCTTGAACCAGAGTGCAAATCAGAACAATGCAATCTGTCTCGGAAACATCAGCAGCTCTTCGACCAACCAATTGAATATTGGTGCTCCAACCTTCATTCATGATGGTGCGGAAATATCTACAATGAACACTTGGATAAACTACGATGGAAAAATCCTCATGGATCAAACAAAGCTTCAACATGGATTTGCAAATTCTAGTTTCAATTCCTTGGATGAGTTGGTTAATGCTCTGTCAAAACAGGATCAAGATCAATCTATTCAAAATAATGGCGAATTTGGATTTGACGCTCAATCTCTTGGGTCGTCGTGTACATGA 2100 41.38 MTVEVRKTNLVGENDDMEQFPIGMRVLAVDDDPICLKVLENLLRKCQYHVTTTNQAVQALKMLRENKNRFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSNTELVKKGVIHGACDYLLKPVRIEELKNIWQHVLRRKKPSVKNQNKSINGNNTSQGVEVAKGCPPAVSTDNEKSGKRQKDQDDDEEGGEEDSTYENDDSSTQKKPRVNWYDGDENLHRKFVAAVNILGYEKAVPKKILDLMNVEGLTRENVASHLQKYRQYLKKLCSEEAQQCNKMGAFGGKHTFFRPMASLNGFSMTGTGRLSNATFSQYPSREIVGQLNSTAGLSLNDIASSGMIQSHKLSNSLSIIGKPHPAFFHTNQPPHTFNGISMSSDHIQLHRDKRTLSFKESNLINDASSFTVSTSFPDARMAVGSSSNYDFGVSSNSLILRGHKQQIHGDGEFGGQSSLKVTLDNQEPLDSGTGVSNILGHSQSNKNWPSSIQLPKFSSSVSVTGIYPPDGMPATYLTISSDQPDHDNFPIGFPSTSGDSSSQLDLRGDTQCYEELIGSVVEATNGRSKQQWEAAKQDYYSNHSSIVRDSLVSGNSVADPLNQSANQNNAICLGNISSSSTNQLNIGAPTFIHDGAEISTMNTWINYDGKILMDQTKLQHGFANSSFNSLDELVNALSKQDQDQSIQNNGEFGFDAQSLGSSCT 699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27699044 27703556 - MELO3C004489.2.1 Cme05g01902 328965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01902 699 PIRSF RR_ARR_type-B 1 698 IPR017053 GO:0003677|GO:0003700|GO:0009736
Cme05g01902 699 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 679 IPR045279 GO:0009736
Cme05g01902 699 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 210 266 IPR006447 GO:0003677
Cme05g01902 699 MobiDBLite consensus disorder prediction 146 215 - -
Cme05g01902 699 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Cme05g01902 699 Gene3D - 24 180 - -
Cme05g01902 699 SUPERFAMILY Homeodomain-like 208 270 IPR009057 -
Cme05g01902 699 MobiDBLite consensus disorder prediction 149 164 - -
Cme05g01902 699 Gene3D - 206 272 - -
Cme05g01902 699 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 679 - -
Cme05g01902 699 SMART REC_2 24 136 IPR001789 GO:0000160
Cme05g01902 699 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Cme05g01902 699 CDD REC_typeB_ARR-like 26 140 - -
Cme05g01902 699 SUPERFAMILY CheY-like 23 148 IPR011006 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01555 Cme-Chr2:22582843 Cme05g01902 Cme-Chr5:27699044 2.83E-55 dispersed
Cme05g01902 Cme-Chr5:27699044 Cme07g00108 Cme-Chr7:673597 8.64E-145 dispersed
Cme05g01902 Cme-Chr5:27699044 Cme02g01081 Cme-Chr2:15840669 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41377 PF00072 Response_reg 1.60E-25 CL0304 Cme TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01902 K14491 - csv:101203718 1311.98