Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01902 ATGACTGTGGAGGTTCGAAAGACTAATTTAGTTGGTGAAAATGATGATATGGAGCAGTTTCCTATTGGTATGCGTGTTCTTGCTGTAGATGATGACCCCATTTGCCTTAAGGTTTTGGAGAATTTGCTTCGTAAATGTCAATATCATGTTACAACGACCAATCAGGCAGTTCAGGCACTTAAAATGTTGAGGGAGAACAAAAACAGGTTTGACCTGGTTATCAGCGATGTTAACATGCCCGACATGGATGGTTTTAAGCTCCTTGAGCTAGTAGGCCTTGAAATGGACCTACCTGTTATAATGTTGTCTGCGCATAGCAATACTGAACTCGTAAAGAAGGGAGTTATTCATGGTGCATGCGACTATTTGCTGAAACCTGTTCGAATTGAAGAACTGAAGAATATATGGCAACATGTCCTTCGGAGAAAGAAACCTTCTGTTAAGAACCAAAATAAGAGCATTAATGGAAATAACACTAGTCAAGGTGTTGAAGTTGCAAAAGGTTGTCCACCTGCAGTCAGTACTGATAACGAGAAATCTGGTAAAAGACAGAAAGACCAAGATGATGACGAGGAAGGAGGTGAAGAAGACAGTACTTACGAGAATGACGATTCCTCCACCCAAAAAAAGCCAAGAGTAAATTGGTACGATGGAGATGAGAATTTGCACAGGAAGTTTGTGGCAGCTGTTAACATTTTGGGCTATGAAAAGGCTGTTCCCAAGAAGATCCTTGATCTGATGAATGTTGAAGGACTTACAAGAGAAAATGTGGCCAGCCATCTTCAGAAATACAGACAATACCTTAAAAAACTCTGTAGTGAGGAAGCTCAGCAATGTAACAAGATGGGCGCATTTGGAGGTAAGCACACCTTCTTCAGGCCCATGGCATCACTCAATGGATTTTCAATGACTGGAACAGGAAGGCTCTCTAATGCAACATTCTCGCAGTATCCCTCTCGAGAAATAGTTGGTCAATTAAACTCTACTGCTGGATTGAGCTTAAATGATATTGCTTCCTCTGGAATGATCCAGTCCCATAAATTGAGTAACTCATTAAGTATCATTGGGAAACCCCATCCAGCTTTCTTCCATACAAACCAACCTCCGCACACATTCAATGGCATTTCAATGTCATCGGATCACATTCAGTTACACAGAGACAAACGCACTCTGTCATTTAAAGAGTCTAATTTGATAAATGATGCCTCAAGTTTTACAGTTTCCACCAGCTTCCCCGATGCTAGAATGGCTGTTGGTAGCTCAAGCAATTATGATTTCGGTGTTTCAAGCAATTCGTTGATATTACGAGGACATAAGCAACAGATTCATGGCGATGGAGAATTCGGAGGGCAGTCTTCTCTTAAGGTAACTCTAGACAACCAAGAACCGTTAGACAGCGGCACAGGTGTTTCTAATATTTTGGGGCACAGTCAGTCTAACAAAAACTGGCCGAGTTCAATCCAGCTCCCCAAATTTTCATCTAGTGTCTCAGTCACTGGAATTTACCCTCCTGATGGAATGCCCGCTACTTATTTGACAATTTCCTCGGATCAGCCCGATCACGACAACTTTCCTATTGGCTTTCCTTCAACAAGTGGGGATTCAAGTTCTCAGCTTGATTTAAGAGGGGACACACAATGCTATGAAGAACTAATTGGTAGTGTTGTTGAAGCGACGAATGGTAGATCAAAACAACAATGGGAAGCAGCTAAACAGGATTACTATAGCAACCATAGTTCCATTGTGAGGGACTCTTTAGTTTCTGGGAATAGTGTTGCAGATCCCTTGAACCAGAGTGCAAATCAGAACAATGCAATCTGTCTCGGAAACATCAGCAGCTCTTCGACCAACCAATTGAATATTGGTGCTCCAACCTTCATTCATGATGGTGCGGAAATATCTACAATGAACACTTGGATAAACTACGATGGAAAAATCCTCATGGATCAAACAAAGCTTCAACATGGATTTGCAAATTCTAGTTTCAATTCCTTGGATGAGTTGGTTAATGCTCTGTCAAAACAGGATCAAGATCAATCTATTCAAAATAATGGCGAATTTGGATTTGACGCTCAATCTCTTGGGTCGTCGTGTACATGA 2100 41.38 MTVEVRKTNLVGENDDMEQFPIGMRVLAVDDDPICLKVLENLLRKCQYHVTTTNQAVQALKMLRENKNRFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSNTELVKKGVIHGACDYLLKPVRIEELKNIWQHVLRRKKPSVKNQNKSINGNNTSQGVEVAKGCPPAVSTDNEKSGKRQKDQDDDEEGGEEDSTYENDDSSTQKKPRVNWYDGDENLHRKFVAAVNILGYEKAVPKKILDLMNVEGLTRENVASHLQKYRQYLKKLCSEEAQQCNKMGAFGGKHTFFRPMASLNGFSMTGTGRLSNATFSQYPSREIVGQLNSTAGLSLNDIASSGMIQSHKLSNSLSIIGKPHPAFFHTNQPPHTFNGISMSSDHIQLHRDKRTLSFKESNLINDASSFTVSTSFPDARMAVGSSSNYDFGVSSNSLILRGHKQQIHGDGEFGGQSSLKVTLDNQEPLDSGTGVSNILGHSQSNKNWPSSIQLPKFSSSVSVTGIYPPDGMPATYLTISSDQPDHDNFPIGFPSTSGDSSSQLDLRGDTQCYEELIGSVVEATNGRSKQQWEAAKQDYYSNHSSIVRDSLVSGNSVADPLNQSANQNNAICLGNISSSSTNQLNIGAPTFIHDGAEISTMNTWINYDGKILMDQTKLQHGFANSSFNSLDELVNALSKQDQDQSIQNNGEFGFDAQSLGSSCT 699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27699044 27703556 - MELO3C004489.2.1 Cme05g01902 328965

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01902 699 PIRSF RR_ARR_type-B 1 698 IPR017053 GO:0003677|GO:0003700|GO:0009736
Cme05g01902 699 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 679 IPR045279 GO:0009736
Cme05g01902 699 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 210 266 IPR006447 GO:0003677
Cme05g01902 699 MobiDBLite consensus disorder prediction 146 215 - -
Cme05g01902 699 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Cme05g01902 699 Gene3D - 24 180 - -
Cme05g01902 699 SUPERFAMILY Homeodomain-like 208 270 IPR009057 -
Cme05g01902 699 MobiDBLite consensus disorder prediction 149 164 - -
Cme05g01902 699 Gene3D - 206 272 - -
Cme05g01902 699 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 679 - -
Cme05g01902 699 SMART REC_2 24 136 IPR001789 GO:0000160
Cme05g01902 699 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Cme05g01902 699 CDD REC_typeB_ARR-like 26 140 - -
Cme05g01902 699 SUPERFAMILY CheY-like 23 148 IPR011006 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01902 K14491 ARR-B; two-component response regulator ARR-B family - csv:101203718 1311.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01555 Cme-Chr2:22582843 Cme05g01902 Cme-Chr5:27699044 2.83E-55 dispersed
Cme05g01902 Cme-Chr5:27699044 Cme07g00108 Cme-Chr7:673597 8.64E-145 dispersed
Cme05g01902 Cme-Chr5:27699044 Cme02g01081 Cme-Chr2:15840669 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme07g00108 . 52 346 Response Regulator Gene Family AT3G16857 50.8 7.0e-61 232.3
Cme03g02198 . 52 256 Response Regulator Gene Family AT3G16857 53.8 2.2e-54 210.7
Cme05g01902 . 59 316 Response Regulator Gene Family AT3G16857 51.8 5.9e-52 202.6
Cme02g01081 . 18 383 Response Regulator Gene Family AT4G31920 54.5 4.4e-91 332.4
Cme07g00108 . 1 413 Response Regulator Gene Family AT4G31920 52.0 5.4e-89 325.5
Cme05g01902 . 13 340 Response Regulator Gene Family AT4G31920 55.1 1.5e-78 290.8
Cme06g00764 . 16 270 Response Regulator Gene Family AT4G31920 53.8 1.6e-69 260.8
Cme03g02198 . 11 259 Response Regulator Gene Family AT4G31920 50.4 4.3e-62 236.1
Cme06g00764 . 99 261 Response Regulator Gene Family AT1G67710 53.3 5.4e-39 159.1
Cme07g00108 . 93 255 Response Regulator Gene Family AT1G67710 50.9 1.5e-36 151.0
Cme02g01081 . 16 390 Response Regulator Gene Family AT2G25180 55.9 1.2e-102 370.9
Cme06g00764 . 18 290 Response Regulator Gene Family AT2G25180 55.4 4.6e-78 289.3
Cme03g02198 . 11 256 Response Regulator Gene Family AT2G25180 55.6 8.7e-69 258.5
Cme11g02055 . 1 174 Response Regulator Gene Family AT2G25180 52.0 3.2e-39 160.2
Cme06g00764 . 79 308 Response Regulator Gene Family AT2G01760 50.4 3.6e-53 205.7
Cme02g01081 . 79 303 Response Regulator Gene Family AT2G01760 53.1 8.2e-50 194.5
Cme03g02198 . 72 259 Response Regulator Gene Family AT2G01760 51.0 3.5e-48 189.1
Cme03g02198 . 9 258 Response Regulator Gene Family AT5G58080 50.6 6.4e-62 235.7
Cme06g00764 . 18 241 Response Regulator Gene Family AT4G16110 66.5 3.0e-78 290.0
Cme07g00108 . 12 233 Response Regulator Gene Family AT4G16110 65.8 1.5e-61 234.6
Cme03g02198 . 10 235 Response Regulator Gene Family AT4G16110 54.5 9.1e-59 225.3
Cme02g01081 . 17 249 Response Regulator Gene Family AT4G16110 53.4 8.5e-57 218.8
Cme05g01902 . 12 266 Response Regulator Gene Family AT4G16110 52.6 1.8e-51 201.1
Cme11g02055 . 1 141 Response Regulator Gene Family AT4G16110 56.4 2.8e-36 150.6
Cme02g01933 . 31 189 Response Regulator Gene Family AT3G48100 68.8 6.0e-53 204.1
Cme10g00486 . 29 162 Response Regulator Gene Family AT3G48100 72.4 5.7e-51 197.6
Cme09g01191 . 11 149 Response Regulator Gene Family AT3G48100 60.4 1.5e-40 162.9
Cme08g01358 CCT 77 216 Response Regulator Gene Family AT3G48100 58.6 1.3e-39 159.8
Cme10g00486 . 1 175 Response Regulator Gene Family AT1G59940 65.4 2.7e-56 216.1
Cme02g01933 . 10 159 Response Regulator Gene Family AT1G59940 62.9 5.1e-47 185.3
Cme09g01191 . 5 150 Response Regulator Gene Family AT1G59940 61.6 5.4e-41 165.2
Cme10g00486 . 16 185 Response Regulator Gene Family AT1G10470 66.5 1.9e-54 209.5
Cme02g01933 . 30 168 Response Regulator Gene Family AT1G10470 67.6 5.6e-46 181.4
Cme09g01191 . 5 155 Response Regulator Gene Family AT1G10470 57.7 1.0e-39 160.6
Cme08g01358 CCT 77 214 Response Regulator Gene Family AT1G10470 60.1 1.9e-38 156.4
Cme02g01933 . 31 189 Response Regulator Gene Family AT3G48100 68.8 6.0e-53 204.1
Cme10g00486 . 29 162 Response Regulator Gene Family AT3G48100 72.4 5.7e-51 197.6
Cme09g01191 . 11 149 Response Regulator Gene Family AT3G48100 60.4 1.5e-40 162.9
Cme08g01358 CCT 77 216 Response Regulator Gene Family AT3G48100 58.6 1.3e-39 159.8
Cme02g01933 . 31 164 Response Regulator Gene Family AT5G62920 77.6 7.5e-51 197.2
Cme10g00486 . 11 175 Response Regulator Gene Family AT5G62920 64.2 1.1e-49 193.4
Cme09g01191 . 9 149 Response Regulator Gene Family AT5G62920 59.6 4.1e-41 164.9
Cme08g01358 CCT 77 216 Response Regulator Gene Family AT5G62920 58.6 2.9e-39 158.7
Cme02g01933 . 30 163 Response Regulator Gene Family AT1G19050 75.4 5.4e-50 194.5
Cme10g00486 . 28 185 Response Regulator Gene Family AT1G19050 60.4 1.2e-44 176.8
Cme08g01358 CCT 75 216 Response Regulator Gene Family AT1G19050 56.3 9.5e-39 157.1
Cme09g01191 . 7 152 Response Regulator Gene Family AT1G19050 54.4 4.0e-37 151.8
Cme08g01358 CCT 68 320 Response Regulator Gene Family AT2G41310 53.8 8.1e-60 227.3
Cme04g02093 CCT 1 181 Response Regulator Gene Family AT2G41310 63.5 5.6e-53 204.5
Cme09g01191 . 1 151 Response Regulator Gene Family AT2G41310 65.6 6.5e-49 191.0
Cme03g00540 . 12 160 Response Regulator Gene Family AT2G41310 60.7 2.8e-44 175.6
Cme10g00486 . 25 158 Response Regulator Gene Family AT2G41310 58.9 2.9e-41 165.6
Cme02g01933 . 29 160 Response Regulator Gene Family AT2G41310 62.6 5.0e-41 164.9
Cme10g00026 . 105 264 Response Regulator Gene Family AT2G41310 58.2 8.5e-41 164.1
Cme08g01358 CCT 68 320 Response Regulator Gene Family AT3G57040 54.5 7.4e-64 240.7
Cme04g02093 CCT 1 179 Response Regulator Gene Family AT3G57040 66.5 6.9e-54 207.6
Cme09g01191 . 1 154 Response Regulator Gene Family AT3G57040 66.2 9.4e-51 197.2
Cme03g00540 . 19 189 Response Regulator Gene Family AT3G57040 55.7 7.7e-45 177.6
Cme10g00486 . 25 158 Response Regulator Gene Family AT3G57040 59.4 3.2e-43 172.2
Cme02g01933 . 26 160 Response Regulator Gene Family AT3G57040 61.8 1.4e-41 166.8
Cme10g00026 . 110 264 Response Regulator Gene Family AT3G57040 60.0 2.3e-41 166.0
Cme02g01933 . 25 183 Response Regulator Gene Family AT1G74890 69.9 1.2e-52 203.4
Cme10g00486 . 25 187 Response Regulator Gene Family AT1G74890 61.8 2.5e-47 185.7
Cme08g01358 CCT 75 209 Response Regulator Gene Family AT1G74890 60.0 4.3e-39 158.3
Cme09g01191 . 7 144 Response Regulator Gene Family AT1G74890 58.7 5.6e-39 157.9
Cme10g00486 . 26 159 Response Regulator Gene Family AT2G40670 55.5 1.5e-39 159.5
Cme02g01933 . 30 161 Response Regulator Gene Family AT2G40670 59.3 1.4e-37 152.9
Cme10g00486 . 26 159 Response Regulator Gene Family AT3G56380 54.8 2.9e-40 161.8
Cme02g01933 . 25 161 Response Regulator Gene Family AT3G56380 59.4 3.8e-40 161.4
Cme09g01191 . 11 152 Response Regulator Gene Family AT3G56380 57.3 4.6e-38 154.5
Cme07g00108 . 52 346 Response Regulator Gene Family AT3G16857 50.8 7.0e-61 232.3
Cme03g02198 . 52 256 Response Regulator Gene Family AT3G16857 53.8 2.2e-54 210.7
Cme05g01902 . 59 316 Response Regulator Gene Family AT3G16857 51.8 5.9e-52 202.6
Cme06g00764 . 18 241 Response Regulator Gene Family AT4G16110 66.5 3.0e-78 290.0
Cme07g00108 . 12 233 Response Regulator Gene Family AT4G16110 65.8 1.5e-61 234.6
Cme03g02198 . 10 235 Response Regulator Gene Family AT4G16110 54.5 9.1e-59 225.3
Cme02g01081 . 17 249 Response Regulator Gene Family AT4G16110 53.4 8.5e-57 218.8
Cme05g01902 . 12 266 Response Regulator Gene Family AT4G16110 52.6 1.8e-51 201.1
Cme11g02055 . 1 141 Response Regulator Gene Family AT4G16110 56.4 2.8e-36 150.6
Cme02g01081 . 18 383 Response Regulator Gene Family AT4G31920 54.5 4.4e-91 332.4
Cme07g00108 . 1 413 Response Regulator Gene Family AT4G31920 52.0 5.4e-89 325.5
Cme05g01902 . 13 340 Response Regulator Gene Family AT4G31920 55.1 1.5e-78 290.8
Cme06g00764 . 16 270 Response Regulator Gene Family AT4G31920 53.8 1.6e-69 260.8
Cme03g02198 . 11 259 Response Regulator Gene Family AT4G31920 50.4 4.3e-62 236.1
Cme06g00764 . 99 261 Response Regulator Gene Family AT1G67710 53.3 5.4e-39 159.1
Cme07g00108 . 93 255 Response Regulator Gene Family AT1G67710 50.9 1.5e-36 151.0
Cme02g01081 . 16 390 Response Regulator Gene Family AT2G25180 55.9 1.2e-102 370.9
Cme06g00764 . 18 290 Response Regulator Gene Family AT2G25180 55.4 4.6e-78 289.3
Cme03g02198 . 11 256 Response Regulator Gene Family AT2G25180 55.6 8.7e-69 258.5
Cme11g02055 . 1 174 Response Regulator Gene Family AT2G25180 52.0 3.2e-39 160.2
Cme06g00764 . 79 308 Response Regulator Gene Family AT2G01760 50.4 3.6e-53 205.7
Cme02g01081 . 79 303 Response Regulator Gene Family AT2G01760 53.1 8.2e-50 194.5
Cme03g02198 . 72 259 Response Regulator Gene Family AT2G01760 51.0 3.5e-48 189.1
Cme03g02198 . 9 258 Response Regulator Gene Family AT5G58080 50.6 6.4e-62 235.7
Cme12g01975 . 6 555 Response Regulator Gene Family AT5G61380 51.2 8.5e-144 507.7
Cme08g02346 . 38 206 Response Regulator Gene Family AT5G60100 68.6 9.9e-56 214.5
Cme08g02346 . 67 206 Response Regulator Gene Family AT5G24470 55.7 3.9e-39 159.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005633 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 4 15 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41377 PF00072 Response_reg 1.60E-25 CL0304 Cme TR