Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01908 ATGTCAAGCTGCATCAGTAGTGCTCAAGAACAACTCTGTTATATCCCCTGCAATTTTTGCAATATTGTTCTAGCGGTGAGTGTTCCATGCAGCAATCTCTTTGACATCGTGACCGTCCGATGTGGTCACTGCAGCAACCTCTGGTCAGTGAATATGGCTGCTGCTTTCCAATCTCTCTCATGGCAAAATTCTCAGGCATCAAACCATAGCCACAGTGGGAGTGGAGGTGATCACTATAGAGTTGAATTGGGATCATCATCATCAAAATCCAACACTAAGATGAAAATGAGAGCTCCAATTAAGAACCCTACAAATGATCATCATGATCAAAGGCTCATTAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTTATAAAAGAGGAAATCCAAAGGATCAAAGCAACTAATCCAGATATTACCCACAGGGAAGCCTTCAGTACTGCTGCTAAAAATTGGGCACATTTCCCACATATTCATTTTGGCCTCATGCTGGATACCAACAATCTGCAGACTAAGAATGATGGATCTGAGAAGCATCTGATGTCAGTGTCAGGGCTGCACTATTGA 585 42.91 MSSCISSAQEQLCYIPCNFCNIVLAVSVPCSNLFDIVTVRCGHCSNLWSVNMAAAFQSLSWQNSQASNHSHSGSGGDHYRVELGSSSSKSNTKMKMRAPIKNPTNDHHDQRLINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGLMLDTNNLQTKNDGSEKHLMSVSGLHY 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27768209 27771895 + MELO3C004493.2.1 Cme05g01908 328971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01908 194 MobiDBLite consensus disorder prediction 84 112 - -
Cme05g01908 194 Gene3D High mobility group box domain 105 163 IPR036910 -
Cme05g01908 194 PANTHER AXIAL REGULATOR YABBY 5 1 184 - -
Cme05g01908 194 Pfam YABBY protein 8 168 IPR006780 GO:0007275
Cme05g01908 194 PANTHER PROTEIN YABBY 6-RELATED 1 184 IPR006780 GO:0007275
Cme05g01908 194 MobiDBLite consensus disorder prediction 84 98 - -
Cme05g01908 194 SUPERFAMILY HMG-box 112 161 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01908 Cme-Chr5:27768209 Cme06g02614 Cme-Chr6:33374327 1.32E-13 dispersed
Cme05g00232 Cme-Chr5:1654360 Cme05g01908 Cme-Chr5:27768209 5.80E-68 transposed
Cme10g00349 Cme-Chr10:2260905 Cme05g01908 Cme-Chr5:27768209 7.93E-41 transposed
Cme10g00537 Cme-Chr10:3422911 Cme05g01908 Cme-Chr5:27768209 5.15E-35 transposed
Cme02g01193 Cme-Chr2:17177531 Cme05g01908 Cme-Chr5:27768209 4.35E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41378 PF04690 YABBY 9.30E-72 CL0114 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01908 K25796 - csv:101219877 373.244