Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01908 ATGTCAAGCTGCATCAGTAGTGCTCAAGAACAACTCTGTTATATCCCCTGCAATTTTTGCAATATTGTTCTAGCGGTGAGTGTTCCATGCAGCAATCTCTTTGACATCGTGACCGTCCGATGTGGTCACTGCAGCAACCTCTGGTCAGTGAATATGGCTGCTGCTTTCCAATCTCTCTCATGGCAAAATTCTCAGGCATCAAACCATAGCCACAGTGGGAGTGGAGGTGATCACTATAGAGTTGAATTGGGATCATCATCATCAAAATCCAACACTAAGATGAAAATGAGAGCTCCAATTAAGAACCCTACAAATGATCATCATGATCAAAGGCTCATTAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTTATAAAAGAGGAAATCCAAAGGATCAAAGCAACTAATCCAGATATTACCCACAGGGAAGCCTTCAGTACTGCTGCTAAAAATTGGGCACATTTCCCACATATTCATTTTGGCCTCATGCTGGATACCAACAATCTGCAGACTAAGAATGATGGATCTGAGAAGCATCTGATGTCAGTGTCAGGGCTGCACTATTGA 585 42.91 MSSCISSAQEQLCYIPCNFCNIVLAVSVPCSNLFDIVTVRCGHCSNLWSVNMAAAFQSLSWQNSQASNHSHSGSGGDHYRVELGSSSSKSNTKMKMRAPIKNPTNDHHDQRLINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGLMLDTNNLQTKNDGSEKHLMSVSGLHY 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27768209 27771895 + MELO3C004493.2.1 Cme05g01908 328971

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01908 194 MobiDBLite consensus disorder prediction 84 112 - -
Cme05g01908 194 Gene3D High mobility group box domain 105 163 IPR036910 -
Cme05g01908 194 PANTHER AXIAL REGULATOR YABBY 5 1 184 - -
Cme05g01908 194 Pfam YABBY protein 8 168 IPR006780 GO:0007275
Cme05g01908 194 PANTHER PROTEIN YABBY 6-RELATED 1 184 IPR006780 GO:0007275
Cme05g01908 194 MobiDBLite consensus disorder prediction 84 98 - -
Cme05g01908 194 SUPERFAMILY HMG-box 112 161 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01908 K25796 YAB; plant-specific transcription factor YABBY family protein - csv:101219877 373.244
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01908 Cme-Chr5:27768209 Cme06g02614 Cme-Chr6:33374327 1.32E-13 dispersed
Cme05g00232 Cme-Chr5:1654360 Cme05g01908 Cme-Chr5:27768209 5.80E-68 transposed
Cme10g00349 Cme-Chr10:2260905 Cme05g01908 Cme-Chr5:27768209 7.93E-41 transposed
Cme10g00537 Cme-Chr10:3422911 Cme05g01908 Cme-Chr5:27768209 5.15E-35 transposed
Cme02g01193 Cme-Chr2:17177531 Cme05g01908 Cme-Chr5:27768209 4.35E-56 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme10g00349 . 60 240 C2C2-YABBY Transcription Factor Family AT1G69180 53.5 1.3e-44 176.4
Cme05g00232 . 1 169 C2C2-YABBY Transcription Factor Family AT1G08465 65.3 2.7e-53 205.3
Cme05g01908 . 8 173 C2C2-YABBY Transcription Factor Family AT2G26580 71.7 2.4e-61 231.9
Cme05g00232 . 1 172 C2C2-YABBY Transcription Factor Family AT2G26580 58.9 2.2e-46 182.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001272 2 2 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 7 3 1 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41378 PF04690 YABBY 9.30E-72 CL0114 Cme TF