Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01917 ATGGTGCCTTCAAAGAAGTTTAGAGGTGTTAGGCAAAGACATTGGGGATCTTGGGTCTCCGAAATTCGTCATCCTCTTCTGAAGAGAAGAGTTTGGTTGGGGACGTTTGAGACGGCGGAGGAGGCAGCGAGAGCTTATGATCAAGCGGCCGTGTTAATGAGCGGCCGGAATGCGAAAACCAATTTTCCGATGAGCCAAACGACGGTGTCGGAGTTTGAAAAACCCGACAATAATATGATCAATAATATCATTTCTCCATCTTCTCCAAAGGGCTTATCGGAGATTCTCCACGCCAAGCTCCGAAAATGCAGCAAGGTGCCGTCGCCATCGATGACATGTCTCCGACTGGACACCGAAAATTCCCACATCGGCGTTTGGCAGAAACGCGCTGGCCAACGCTCCGACTCCAGCTGGGTCATGACCGTTCATCTTGGAAAAACCAACTCCTCCTCCTCCTCCTCCTCCACCACGGCAGGCGGAGGAGAGGACGGCGCCGACGGTGGGCGGGTGAAAAGGAATAAAAGAAGTGGGAGTTTTTCTGGTTTGATGTCGTCGTCAGAAGGTAGTGGCGGTGGGAGCTGCCACATGAGGAAGTTGGAAATGGATGACGAAGAAGAAAGGATTGCATTACAAATGATTGAGGAATTACTGAACAGAAATTATGGTAACCCATCTGAAATTATTCAACTTCAAGATCATCTTCATGGGGAGGAACCAACTTTTTTACCCTCTCTAATCTAA 741 48.99 MVPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKTNFPMSQTTVSEFEKPDNNMINNIISPSSPKGLSEILHAKLRKCSKVPSPSMTCLRLDTENSHIGVWQKRAGQRSDSSWVMTVHLGKTNSSSSSSSTTAGGGEDGADGGRVKRNKRSGSFSGLMSSSEGSGGGSCHMRKLEMDDEEERIALQMIEELLNRNYGNPSEIIQLQDHLHGEEPTFLPSLI 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27852221 27854069 + MELO3C004503.2.1 Cme05g01917 328980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01917 246 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Cme05g01917 246 MobiDBLite consensus disorder prediction 177 191 - -
Cme05g01917 246 MobiDBLite consensus disorder prediction 145 196 - -
Cme05g01917 246 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 226 - -
Cme05g01917 246 Pfam AP2 domain 6 50 IPR001471 GO:0003700|GO:0006355
Cme05g01917 246 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Cme05g01917 246 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 226 - -
Cme05g01917 246 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Cme05g01917 246 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Cme05g01917 246 MobiDBLite consensus disorder prediction 145 160 - -
Cme05g01917 246 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Cme05g01917 246 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Cme05g01917 246 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme02g01203 Cme05g01917 CCT
Cme02g01203 Cme05g01917 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00406 Cme-Chr4:3219740 Cme05g01917 Cme-Chr5:27852221 2.00E-71 dispersed
Cme05g01917 Cme-Chr5:27852221 Cme07g00103 Cme-Chr7:640263 2.07E-31 dispersed
Cme02g01203 Cme-Chr2:17354064 Cme05g01917 Cme-Chr5:27852221 2.71E-79 wgd
Cme05g01917 Cme-Chr5:27852221 Cme07g02066 Cme-Chr7:25529775 1.86E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41379 PF00847 AP2 3.60E-12 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01917 - - csv:101207090 407.527