Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01934 ATGGCCGGAAGTATAGGAAGAGACGAGTGGTCGGACTACGACAGCAGTTGCTCCTCCTCCATAACCGTCCCAGACTCAACCCGTAGCTGGATGAGCAACCTCAGTTTCGGGAGTAGGCGTCGCAGCAGCAGCTCAGCCGCAGACGGGGGTGGGCTTGAGAACATTACAAGCGGTACGACGACGACGACGATGATGGTGAAGCCACACAAAGCAAACGAAGTGGGATGGGAGGCGATGCGGTGGCTACGGCGAGCGAAAGGGGAAGTGGGGTTAGAGGATTTCCGGCTAATACGACGGGTGGGGAGCGGAGATATTGGGAATGTATATTTATGTGAGATAAGGAATCCAATGGTGGGATTACCAAAGTGGTTTTACGCCATGAAAGTGGTTGATAGAGAAGCGGTTTGTGTAAGGAATAAAGAGAGAAGGGCAGATATGGAAAAGGAGATATTGAAAGTACTTGATCATCCTTTCTTGCCAACTCTTTATGCTCATTTTGAAGCTTCCCATTATTCTTGTTTGGTTATGGAGTTTTGTCCTGGTGGTGATTTGTATGCTGCCAGATTACGTCTTCCCAATAAACGTTTCTCCATTCCTTCTGCTAAGTTTTATGCGGCGGAGATAATTTTAGCTCTTGAGTATCTACACATGATGGGTATAATTTATAGAGATTTAAAGCCGGAAAATGTTTTAGTTAGAGAAGACGGCCACATTATGCTCTCCGATTTCGATCTCTGCCTCAAATGCGACGTCGTTCCAAAGCTCCTCCGTTCCCGTACCACCGCCTCCGATCGCCACCTCAGATCCTCCTCCTACACCTTCTCCACTTCCTCCTCCTGCGCCGCCGCCCCCATCCAACCCGTCCTCTCCTGTTTCTCCCTCTCCCGTCGCCAAAAATCCACCACCGTCACCACAATAACCGAAAACGCCTCAGACTCCATCTACGGCCCCGGCGACGACGGGGAGGAGTTCGACCCAGAACCAGAATTAATAGCGGAACCGATAAATGCGCGGTCGAAGTCGTTTGTCGGAACCCACGAGTATTTGGCTCCGGAGGTGATTTCCGGGCAGGGACACGGGAGCGGAGTGGACTGGTGGACGTTGGGGATATTCTTATACGAAATGTTGTATGGGAAAACGCCGTTTAAAGGGGAAAACAATGAGAAGACGTTGATGAATATATTGAAGCAGCCATTGAAATTTCCAAGAATTGGGATTAGTAGCAGCAAAGAATACGAAGAAATGGTGAAAGTTGAGGATTTAATTAAGAAACTTTTGGTGAAAAATCCAAAGAAAAGAATTGGGAGTTTAAAAGGATCAGTTGAAATCAAAAGACATGAATTTTTCAAAGGAATTAATTGGGCTTTAATTAGATCCGTACGACCTCCACAAATCCCCAACAACAATATTATTAATAACAACCTTAATTACTCTAAATACCCTTCTAATTATTTACCCAAATTAAGTAAGAAACAAAGACAACAACCTTACCAAATCCCTAATCACCATTTTGATTACTTCTAA 1524 45.87 MAGSIGRDEWSDYDSSCSSSITVPDSTRSWMSNLSFGSRRRSSSSAADGGGLENITSGTTTTTMMVKPHKANEVGWEAMRWLRRAKGEVGLEDFRLIRRVGSGDIGNVYLCEIRNPMVGLPKWFYAMKVVDREAVCVRNKERRADMEKEILKVLDHPFLPTLYAHFEASHYSCLVMEFCPGGDLYAARLRLPNKRFSIPSAKFYAAEIILALEYLHMMGIIYRDLKPENVLVREDGHIMLSDFDLCLKCDVVPKLLRSRTTASDRHLRSSSYTFSTSSSCAAAPIQPVLSCFSLSRRQKSTTVTTITENASDSIYGPGDDGEEFDPEPELIAEPINARSKSFVGTHEYLAPEVISGQGHGSGVDWWTLGIFLYEMLYGKTPFKGENNEKTLMNILKQPLKFPRIGISSSKEYEEMVKVEDLIKKLLVKNPKKRIGSLKGSVEIKRHEFFKGINWALIRSVRPPQIPNNNIINNNLNYSKYPSNYLPKLSKKQRQQPYQIPNHHFDYF 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27963316 27966084 + MELO3C004520.2.1 Cme05g01934 328997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01934 507 Gene3D Transferase(Phosphotransferase) domain 1 337 467 - -
Cme05g01934 507 SMART serkin_6 94 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g01934 507 PANTHER PROTEIN KINASE PINOID 2 7 507 - -
Cme05g01934 507 ProSiteProfiles AGC-kinase C-terminal domain profile. 450 507 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cme05g01934 507 MobiDBLite consensus disorder prediction 38 66 - -
Cme05g01934 507 Gene3D Phosphorylase Kinase; domain 1 91 182 - -
Cme05g01934 507 Pfam Protein kinase domain 95 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g01934 507 Pfam Protein kinase domain 339 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g01934 507 ProSitePatterns Serine/Threonine protein kinases active-site signature. 220 232 IPR008271 GO:0004672|GO:0006468
Cme05g01934 507 MobiDBLite consensus disorder prediction 1 23 - -
Cme05g01934 507 PANTHER FLIPPASE KINASE 1-RELATED 7 507 - -
Cme05g01934 507 ProSiteProfiles Protein kinase domain profile. 94 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g01934 507 SUPERFAMILY Protein kinase-like (PK-like) 75 472 IPR011009 -
Cme05g01934 507 Gene3D Transferase(Phosphotransferase) domain 1 183 250 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01934 Cme-Chr5:27963316 Cme08g01025 Cme-Chr8:6653770 1.14E-146 dispersed
Cme05g01934 Cme-Chr5:27963316 Cme08g01220 Cme-Chr8:8594012 3.89E-130 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64909 PF00069 Pkinase 6.60E-31 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01934 K08286 - csv:101202905 928.317