Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01942 ATGGTGGTCGGTTGGATTTTCTGTTGGTTTTTGTTCGTGCTGCTTCTAAGGGCGGTGGTGGTTCTCTGGTGGCGGCCGAGAAGAATCGAACAACATTTCTTCCGACAAGGAATTCGTGGCCCTCCCTATCGTTTCTTCATTGGAAATGTTAAGGAACTCGTCGGGATGATGATCAAAGCTTCTTCCGATCATTCTTTTCCTAATTCTTCTCATAATATTCTCCCTCGTGTTCTTCCTTTTTACCATCATTGGAAGAAAATTTATGGGTCAAAATTTCTAGTGTGGTTTGGACCGACGGTGAGATTGGCAGTGTCTGATCCAGATTTGATAAGAGAAATATTCACATCGAAATCAGAATTTTGTGAGAAAAATGAACCACACCCACTTGTTAAACAGCTAGAAGGTGATGGACTTCTTAGCCTCAAAGGCCAAAAATGGGCTCTTCATCGCAAGATCATCTCTCCTTCCTTTCACATGGACAATCTCAAATTGTTGATTCCAGTGATGGCAAAAAGTGTTGTGGACATGCTGGAGAAATGGTCAGCATTAATGACGTCAGCAGATTCCGATGAGGTGGAAATTGAAGTATCCGAATGGTTCCAAACCCTAACCGAAGATGTCATCACTAGAACAGCATTTGGCTCAAGCTATGAAGATGGAAAAGCCATTTTTCGGTTACAAGCCCAACAAATGGTCCTTGCTTCTCAAGCCTTTGAAAAAGTTTTCATCCCGGGTTATCGATTCTTACCTACGAGAACGAACGTGAATTCGTGGAAATTGGGTAGAAAAATAAGGAAATCGTTGATGAAATTGATCGACCGACGACGAGAGAATTCGATTGAGACGAGCTCAAAGGATTTGCTAGGGTTAATGATTAGGGCATCAAAGTCATCTCCATCATCAACCATCACTGTTAATGACATTGTTGAAGAGTGCAAAGGGTTTTTCTTTGCTGGCAAACAGACCACATCCAATTTGCTGACGTGGACAATGATCCTCATGGCAATGCACCCACAATGGCAGGTACAGGCACGTGATGAAGTACTAAGGGAGTGTGGGGCACGTGACATACCCTCCAAAGATGATGTTACAAAGCTCAAAATGTTGAGTATGATCATCAACGAATCGTTACGGTTATATCCACCGACAGTGGCAACTATTCGACAAGCGAAAGTTGATGTGGAGCTTGGTGGTTACATGCTTCCACGTGGCACTGAGTTATTGATACCGATTTTGGCGGTTCATCATGATCAAACGATATGGGGGAATGATGTGAATGAGTTCAATCCAGCACGATTTGCTGAAGGTGTTGCAAAGGCAGCCAATCATCGAGTTGGGTTCATTCCGTTCGGGTTAGGAGCTCGAACCTGTATTGGCCAAAACTTGGCTATATTGCAAGCAAAGTTGGCTCTTGCACTCATACTTCAAAAATTCTCTTTTCGATTGGGACCCTCTTATCAACACTCACCAGCAGTTCAAATGCTACTTTATCCACGACATGGTGCACCTATTATCTTCAAGAAATTATCCACTCCATTAGTTCATGAAGATCAACAGTCATGA 1563 42.93 MVVGWIFCWFLFVLLLRAVVVLWWRPRRIEQHFFRQGIRGPPYRFFIGNVKELVGMMIKASSDHSFPNSSHNILPRVLPFYHHWKKIYGSKFLVWFGPTVRLAVSDPDLIREIFTSKSEFCEKNEPHPLVKQLEGDGLLSLKGQKWALHRKIISPSFHMDNLKLLIPVMAKSVVDMLEKWSALMTSADSDEVEIEVSEWFQTLTEDVITRTAFGSSYEDGKAIFRLQAQQMVLASQAFEKVFIPGYRFLPTRTNVNSWKLGRKIRKSLMKLIDRRRENSIETSSKDLLGLMIRASKSSPSSTITVNDIVEECKGFFFAGKQTTSNLLTWTMILMAMHPQWQVQARDEVLRECGARDIPSKDDVTKLKMLSMIINESLRLYPPTVATIRQAKVDVELGGYMLPRGTELLIPILAVHHDQTIWGNDVNEFNPARFAEGVAKAANHRVGFIPFGLGARTCIGQNLAILQAKLALALILQKFSFRLGPSYQHSPAVQMLLYPRHGAPIIFKKLSTPLVHEDQQS 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28013128 28016651 - MELO3C004527.2.1 Cme05g01942 329005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01942 520 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 450 459 IPR017972 GO:0005506|GO:0016705
Cme05g01942 520 PRINTS P450 superfamily signature 318 335 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01942 520 PRINTS P450 superfamily signature 371 382 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01942 520 PRINTS P450 superfamily signature 448 457 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01942 520 PRINTS P450 superfamily signature 457 468 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01942 520 PANTHER CYTOCHROME P450 FAMILY MEMBER 6 504 - -
Cme05g01942 520 Pfam Cytochrome P450 80 487 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01942 520 Gene3D Cytochrome P450 23 512 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01942 520 PANTHER CYTOCHROMEA2 6 504 - -
Cme05g01942 520 SUPERFAMILY Cytochrome P450 72 507 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01942 520 PRINTS E-class P450 group I signature 85 104 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01942 520 PRINTS E-class P450 group I signature 203 221 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01942 520 PRINTS E-class P450 group I signature 307 324 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01942 520 PRINTS E-class P450 group I signature 327 353 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01942 520 PRINTS E-class P450 group I signature 447 457 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01942 520 PRINTS E-class P450 group I signature 457 480 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme02g01253 Cme05g01942 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00607 Cme-Chr4:5831833 Cme05g01942 Cme-Chr5:28013128 4.72E-146 dispersed
Cme04g00609 Cme-Chr4:5866560 Cme05g01942 Cme-Chr5:28013128 2.34E-147 dispersed
Cme05g01942 Cme-Chr5:28013128 Cme07g00429 Cme-Chr7:2834102 3.18E-131 dispersed
Cme02g00165 Cme-Chr2:1232509 Cme05g01942 Cme-Chr5:28013128 1.15E-132 transposed
Cme02g00288 Cme-Chr2:2391189 Cme05g01942 Cme-Chr5:28013128 5.16E-139 transposed
Cme05g00728 Cme-Chr5:8541852 Cme05g01942 Cme-Chr5:28013128 3.76E-98 transposed
Cme06g01006 Cme-Chr6:7225797 Cme05g01942 Cme-Chr5:28013128 1.24E-99 transposed
Cme06g01675 Cme-Chr6:18404540 Cme05g01942 Cme-Chr5:28013128 9.92E-113 transposed
Cme09g00147 Cme-Chr9:1077161 Cme05g01942 Cme-Chr5:28013128 3.72E-114 transposed
Cme09g01553 Cme-Chr9:20537686 Cme05g01942 Cme-Chr5:28013128 8.15E-94 transposed
Cme10g00735 Cme-Chr10:4676600 Cme05g01942 Cme-Chr5:28013128 1.42E-17 transposed
Cme02g01253 Cme-Chr2:18089174 Cme05g01942 Cme-Chr5:28013128 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01942 K15639 - csv:101208789 1006.51