Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cme05g01953	ATGCCATCTCCTCCTGAATTGAGCCTTGATTGTAAGCCTCATAGCTATTCTATGCTGTTGAAATCTTTTGTTTCAGAGCATCATCAAGTGGCAATTACTACTACTACTACTAATAATAATAATACTCAAGATCATCAACAACAACAACAACATCATTCTTCATCACAGAATCAACAACTTCAAGATTTGCTCTCTTGTCTTGAAGCTGAAAGACTCAAAATTGATGCTTTCAAACGTGAACTTCCTCTTTGCATGCAACTTTTAACCAATGCTTTGGAGACATCAAGACAACAACTGCAAGGGTCCAGATCAGTAAACAGCAATAACAACAATGATGAAAATGATCATCAAAATAGTCAAAAACCAATTCTTGAAGAGTTCATTCCACTCAAACAAACAACCTCAGAAAGCTCAGATCAAACCTTAACGAATAACATTTCTGATAAGGCAAATTGGATGATATCAGCTCAACTTTGGAGCCAAACAAATAATAATTCAACAAATATTATTGATGAAACAAAACCAATTAATCTCTCCTCTTCCAAACAACAACAACAACCCATTGTTCATCACCATCAAATTGGATTAATCCCAAAGCTTCAAAGAAACAACAACAACAACAACAACAACAACAATCAAAACAACGGTGGAGCTTTTCTTCCATTTTCAAAAGATAGAATTTTGCATAATTCTACTTCTTCTAATTCTTCTCATCTTCCCGATTTGGCCCTCGCCGCCACGACCGCTGCCGATTTTGCTGACAATGATGGGAATAACAATAATAGTAATAATAATTCTACTGTGGTGGTTAATAATAACAATAACACAACCAACTCTACAAATCAGACTCACCGGAAAGCTAGACGGTGCTGGTCCCCGGATTTGCACCGGCGGTTTGTCAATGCTCTTCAAATGCTTGGTGGTTCACAAGTTGCCACCCCAAAGCAAATCAGGGAGTTGATGAAGGTTGACGGTTTGACCAATGATGAGGTTAAAAGCCATCTCCAGAAATATAGGCTGCACACAAGGCGACCAAGTCCAAGCCCACAAGCGGCCGGAGCTCCGGCGCCGCAGCTGGTAGTCTTAGGAGGCATTTGGGTTCCACCGGAGTATGCCACGGCAGCCGCCCATGGTGGAGCACCGGCCCTATACGGACCTCATCCCACAACCTACTGTGCACCACCGGTGCACCAAGATTTCTATCCACCGCCACCGCTGCCGCACCACCAGCTCCACCACCAACACGCGCTCCACCAGCAGCTACACATGTACAAGGCAGCTGCCACTGCTCAGGCTCATAGCTCCCCGGAATCAGACGGCCGAGGAAATGGCGACCGATCCGAGAGCATCGAGGATGGTGGGAAGTCGGAGAGCGGCAGCTGGAAGGTGGAGAGCGGGGGAGAAAATAACGGAGGGACCGGAGAGAGAAAGGGGAACTTGGCGGCGCTTCGGCAAGAGGCCGGAGATGAGAGCAATGGGAGTGAAATTACACTCAAGTTCTAA	1503	45.04	MPSPPELSLDCKPHSYSMLLKSFVSEHHQVAITTTTTNNNNTQDHQQQQQHHSSSQNQQLQDLLSCLEAERLKIDAFKRELPLCMQLLTNALETSRQQLQGSRSVNSNNNNDENDHQNSQKPILEEFIPLKQTTSESSDQTLTNNISDKANWMISAQLWSQTNNNSTNIIDETKPINLSSSKQQQQPIVHHHQIGLIPKLQRNNNNNNNNNNQNNGGAFLPFSKDRILHNSTSSNSSHLPDLALAATTAADFADNDGNNNNSNNNSTVVVNNNNNTTNSTNQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQAAGAPAPQLVVLGGIWVPPEYATAAAHGGAPALYGPHPTTYCAPPVHQDFYPPPPLPHHQLHHQHALHQQLHMYKAAATAQAHSSPESDGRGNGDRSESIEDGGKSESGSWKVESGGENNGGTGERKGNLAALRQEAGDESNGSEITLKF	500

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
5	28074342	28077983	-	MELO3C004535.2.1	Cme05g01953	329016

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cme05g01953	500	MobiDBLite	consensus disorder prediction	98	120	-	-
	Cme05g01953	500	MobiDBLite	consensus disorder prediction	202	221	-	-
	Cme05g01953	500	Pfam	Myb-like DNA-binding domain	288	339	IPR001005	-
	Cme05g01953	500	MobiDBLite	consensus disorder prediction	439	458	-	-
	Cme05g01953	500	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR	3	497	IPR044787	GO:0003700\|GO:0006355
	Cme05g01953	500	MobiDBLite	consensus disorder prediction	402	500	-	-
	Cme05g01953	500	MobiDBLite	consensus disorder prediction	254	287	-	-
	Cme05g01953	500	PANTHER	HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED	3	497	-	-
	Cme05g01953	500	TIGRFAM	myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class	286	341	IPR006447	GO:0003677
	Cme05g01953	500	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	283	343	IPR017930	-
	Cme05g01953	500	MobiDBLite	consensus disorder prediction	37	57	-	-
	Cme05g01953	500	MobiDBLite	consensus disorder prediction	98	117	-	-
	Cme05g01953	500	MobiDBLite	consensus disorder prediction	254	286	-	-
	Cme05g01953	500	MobiDBLite	consensus disorder prediction	202	219	-	-
	Cme05g01953	500	Gene3D	-	285	343	-	-
	Cme05g01953	500	SUPERFAMILY	Homeodomain-like	283	344	IPR009057	-

Event-related genes

Select	Gene_1	Gene_2	Event_name
	Cme02g01289	Cme05g01953	CCT

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Cme03g00787	Cme-Chr3:14749130	Cme05g01953	Cme-Chr5:28074342	3.69E-57	dispersed
	Cme05g01953	Cme-Chr5:28074342	Cme10g00288	Cme-Chr10:1872211	1.29E-58	dispersed
	Cme02g01289	Cme-Chr2:18768798	Cme05g01953	Cme-Chr5:28074342	6.45E-111	wgd

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	41381	PF00249	Myb_DNA-binding	1.10E-05	CL0123	Cme	TF

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cme05g01953	-		-	cmo:103497538	757.673