Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01954 ATGGCTACCGCAATTTCTCTTTGCTCTGTTTTTCTTCTTCTACTTATGATTCAGTGGGTTGACTCGGAGCCGACTCAGGATAGACAAGCCCTTCTCGATTTCTTCTCTAAAACTCCTCACGCCAATCGGGTTCAATGGAATCTTTCTAATTCCGTCTGTAATTGGGTCGGCGTTGAGTGTGATTCAAATCGGTCCTTTGTTTACTCTCTCCGTTTGCCTGGTGTTGGCCTCGTCGGACCGATTCCGGCTAATACAATTGGGAAATTGACTCAGCTCCGAGTTCTCAGTCTCCGTTCCAACCGTCTCTCCGGCGAGATCCCTTCGGATTTTTCCAATTTGGTAATGCTAAGGAATCTGTATCTTCAGGATAATGCTTTCTCCGGCGAGTTTCCGTCGAGCTTGACTCGTTTGACTCGGCTGACTAGGCTGGATTTGTCGTCGAACGAATTTTCCGGTCCGATTCCGGCTTCTGTTGACAATCTAACTCACTTGAGTGGGATTTTCTTACAGAACAATGGATTCTCCGGTTCACTCCCGAGTATCTCCGCCGTTAATTTAACAAACTTCAATGTCTCTAACAACAAACTCAACGGCTCGATTCCGAATTCCTTGGCGAAATTCCCTGCTTCTTCCTTTGCCGGAAACTTAGATCTCTGCGGCGGACCATTCCCACCTTGCAACCCATTAACTCCTTCTCCATCTCCATCACAAATCACCCCACCACCCAACAAAAAATCAAAAAAACTCTCCACGGCAGCGATTATCGGAATCGTAATTGGCGCCGTTTTCGCAGCTTTTCTCCTCCTCCTCATCCTAATCCTCTGCATTCGTCGCCGGTCGAACAAAACACAGACGAAATCACCAAAGCCACCAACGGCGGTGGGAACGGCAGCGAGATCTATTCCAGTAGCGGAAGCTGGAACATCGTCGTCGAAAGACGACATTACCGGAGGGTCAGTGGAGGCGACGGAGAGGAACAAGCTGGTGTTTTTCGAAGGTGGGATTTACAACTTTGATTTAGAGGATTTGTTGAGGGCTTCGGCGGAGGTATTGGGGAAAGGAAGCGTCGGAACGTCGTATAAGGCGGTGCTGGAAGAAGGAACGACGGTGGTGGTGAAACGGCTGAAGGATGTGGTGGTGACGAAAAAGGAATTTGAGAATCAAATGGAGATTTTGGGGAAAATTAAACATGAAAATGTGGTTCCGCTAAGAGCTTTTTACTTCTCTAAAGATGAGAAATTGCTTGTTTATGATTATATCTCCACCGGAAGTTTGTCGGCCAGCCTTCACGGAAGCCGAGGATCCGGCAGGACGCCGTTGGATTGGGATTCAAGAATGAGAATAGCACTAAGCGCCGGTCGAGGATTAGCCCATCTCCACCTCACCGGCAAGGTGGTTCACGGCAACATTAAATCCTCCAACATCCTTCTCCGTCCAGATCACGACGCCTGCATTTCCGATTTCGGCTTAAACCCACTTTTCGGCACTGCCACACCGCCGAATCGCGTCGCCGGTTACCGTGCACCGGAGGTCGTCGAAACCCGAAAAGTCACATTCAAATCCGACGTTTACAGCTACGGAGTTCTCCTCCTGGAACTCCTAACAGGAAAAGCCCCCAACCAACAATCCCTCGGCGAGGACGGAATCGACCTTCCACGGTGGGTTCAATCCGTCGTCCGGGAAGAATGGACGGCGGAGGTTTTCGACGCGGAGCTGATGCGGTTTCATAACATCGAAGAAGAGATGGTTCAGTTGCTGCAGATTGCAATGTCCTGTGTTTCGACGGTTCCCGATCAACGGCCGGCGATGCCGGAAGTTGTACGGATGATCGAAGATATGAGTAGTCATAGAAGTGAGACGGATGATGGGTTGCGTCAGTCTTCGGATGAGCCTTCGAAAGGATCAGACGTGAATACGCCACCGGCGGAGTCTAGAACTCCACCGGGAGTGACGCCGTAG 1959 50.13 MATAISLCSVFLLLLMIQWVDSEPTQDRQALLDFFSKTPHANRVQWNLSNSVCNWVGVECDSNRSFVYSLRLPGVGLVGPIPANTIGKLTQLRVLSLRSNRLSGEIPSDFSNLVMLRNLYLQDNAFSGEFPSSLTRLTRLTRLDLSSNEFSGPIPASVDNLTHLSGIFLQNNGFSGSLPSISAVNLTNFNVSNNKLNGSIPNSLAKFPASSFAGNLDLCGGPFPPCNPLTPSPSPSQITPPPNKKSKKLSTAAIIGIVIGAVFAAFLLLLILILCIRRRSNKTQTKSPKPPTAVGTAARSIPVAEAGTSSSKDDITGGSVEATERNKLVFFEGGIYNFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVVTKKEFENQMEILGKIKHENVVPLRAFYFSKDEKLLVYDYISTGSLSASLHGSRGSGRTPLDWDSRMRIALSAGRGLAHLHLTGKVVHGNIKSSNILLRPDHDACISDFGLNPLFGTATPPNRVAGYRAPEVVETRKVTFKSDVYSYGVLLLELLTGKAPNQQSLGEDGIDLPRWVQSVVREEWTAEVFDAELMRFHNIEEEMVQLLQIAMSCVSTVPDQRPAMPEVVRMIEDMSSHRSETDDGLRQSSDEPSKGSDVNTPPAESRTPPGVTP 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28090976 28095409 - MELO3C004536.2.1 Cme05g01954 329017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01954 652 Pfam Protein kinase domain 348 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g01954 652 ProSiteProfiles Protein kinase domain profile. 345 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g01954 652 CDD STKc_IRAK 351 613 - -
Cme05g01954 652 MobiDBLite consensus disorder prediction 303 317 - -
Cme05g01954 652 Pfam Leucine Rich Repeat 91 113 IPR001611 GO:0005515
Cme05g01954 652 Pfam Leucine Rich Repeat 139 161 IPR001611 GO:0005515
Cme05g01954 652 Gene3D Ribonuclease Inhibitor 185 226 IPR032675 -
Cme05g01954 652 Gene3D Transferase(Phosphotransferase) domain 1 420 633 - -
Cme05g01954 652 MobiDBLite consensus disorder prediction 630 644 - -
Cme05g01954 652 SUPERFAMILY Protein kinase-like (PK-like) 349 610 IPR011009 -
Cme05g01954 652 MobiDBLite consensus disorder prediction 612 629 - -
Cme05g01954 652 Pfam Leucine rich repeat N-terminal domain 25 61 IPR013210 -
Cme05g01954 652 MobiDBLite consensus disorder prediction 282 318 - -
Cme05g01954 652 PANTHER RECEPTOR-LIKE KINASE 9 640 - -
Cme05g01954 652 Gene3D Ribonuclease Inhibitor 24 182 IPR032675 -
Cme05g01954 652 SUPERFAMILY L domain-like 27 207 - -
Cme05g01954 652 MobiDBLite consensus disorder prediction 612 652 - -
Cme05g01954 652 PANTHER OS05G0588300 PROTEIN 9 640 - -
Cme05g01954 652 Gene3D Phosphorylase Kinase; domain 1 313 419 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme02g01293 Cme05g01954 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00319 Cme-Chr4:2496731 Cme05g01954 Cme-Chr5:28090976 2.38E-110 dispersed
Cme05g01954 Cme-Chr5:28090976 Cme09g01821 Cme-Chr9:22530090 0 dispersed
Cme10g00239 Cme-Chr10:1574589 Cme05g01954 Cme-Chr5:28090976 6.90E-171 dispersed
Cme01g00301 Cme-Chr1:2249509 Cme05g01954 Cme-Chr5:28090976 1.16E-08 transposed
Cme01g01718 Cme-Chr1:23994347 Cme05g01954 Cme-Chr5:28090976 1.05E-79 transposed
Cme02g00722 Cme-Chr2:8728491 Cme05g01954 Cme-Chr5:28090976 6.75E-129 transposed
Cme04g02445 Cme-Chr4:31056209 Cme05g01954 Cme-Chr5:28090976 2.15E-150 transposed
Cme06g01547 Cme-Chr6:15328506 Cme05g01954 Cme-Chr5:28090976 0 transposed
Cme07g01173 Cme-Chr7:15759262 Cme05g01954 Cme-Chr5:28090976 8.04E-111 transposed
Cme08g00588 Cme-Chr8:3748630 Cme05g01954 Cme-Chr5:28090976 2.36E-109 transposed
Cme08g02089 Cme-Chr8:26503489 Cme05g01954 Cme-Chr5:28090976 0 transposed
Cme09g00359 Cme-Chr9:3074142 Cme05g01954 Cme-Chr5:28090976 4.84E-62 transposed
Cme09g01035 Cme-Chr9:14481537 Cme05g01954 Cme-Chr5:28090976 6.84E-170 transposed
Cme11g01678 Cme-Chr11:24777222 Cme05g01954 Cme-Chr5:28090976 0 transposed
Cme12g01818 Cme-Chr12:24622113 Cme05g01954 Cme-Chr5:28090976 0 transposed
Cme10g01191 Cme-Chr10:12091673 Cme05g01954 Cme-Chr5:28090976 1.56E-13 transposed
Cme02g01293 Cme-Chr2:18860631 Cme05g01954 Cme-Chr5:28090976 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64910 PF00069 Pkinase 5.40E-37 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01954 - - csv:101205802 1184.47