Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01968 ATGAAGAGCGATACCCATTTAAACATTCATCTTTTCTTACATTTCTTCTTCTTCTTTGGCACTTTTCTTTTGTGCCTTTCTTCTTCTTCTTCTGTACCTGAAGAGTTTCTTCAAGCTTCTAGCCATGGAGGACGTGGTCTGACTGATGCTGAAGCTCATTACATCCGTCAACGCCAACTCCTTTACTACAGAGATGAATTTGGTGACCGTGGTGAAGAAGTCGTCGTCGATCCTAAACTTGTTTTTGAAAACGACAGAATTAGAAATGCTTACATAGCATTACAAGCTTGGAAGCAAGCGATTCTGTCTGACCCTTTAAATCTTACTAAGAATTGGGTTGGATCTGATGTTTGTCACTACAAAGGGGTTTTCTGCGCTCCGGCGCCGGATAATTCGTCGATCCGTACAGTCGCCGGAATTGACCTTAACCACGGCGACATTGCCGGGTACTTGCCGGAGGAGCTTGGTCTGCTTGTGGATCTTGCATTGTTTCATATAAACTCCAATCGGTTCTGTGGGACTGTTCCTCACAAGTTCAAAAACTTGAAGTTGTTGTTCGAGCTGGATCTGAGTAATAATCGCTTCGCCGGGAAGTTCCCTCGGGTGGTTCTTAAGTTGCCGGAGCTGAAGTTTTTGGATCTGAGGTTCAACGAGTTCGAAGGGACGGTTCCTAAGGAGCTTTTTGACAAGGATTTGGACGCCATTTTCATCAACCACAATAGATTCCGGTTTGACTTGCCGGAAAATTTCGGGAACTCGCCGGTTTCGGTTATTGTTCTTGCTAATAACAAATTTCATGGGTGTGTGCCGGGGAGCATTGGGAATATGACGAGATTGAATGAGATTATTCTCATGAATAATGGCTTTCGATCGTGTTTGCCGCCGGAGATTGGGTTTCTGAAAAATTTGACAGTGTTTGATGTGAGTCACAATGAGTTTTTTGGGAAGTTGCCGGACACGATCGGTGGAATGGTGAGTTTGGAGCAGCTGAATGTGGCGCATAATTTCTTGTCAGGGAAGATTCCGGACAGTATTTGTAAATTGCCGAATCTGCAGAACTTTACTTACTCTTATAATTTCTTTACGGGAGAAGCGCCGTCGTGCTTGGCGTTGCCGGACTTTGATGATCGGAGGAACTGTATACCAGACCGACCGGTTCAACGCTCTGAGAGGCAATGTAAGTCGTTCTTGTCTAAGCCTGTGGATTGCAGTTCTTTTGGATGTCCATCTTTTGTTGCTCCGTCGCCACCTGTGGTGGTGCCATCGCCGCCACCTGTGGTGGTCCCTTCTCCGCCACCTGTTGTTGTACCAACACCATCGCCACCTGTTTACCCTCCACCGCCACCTGAATCCGCTTCTCATCCCATTTACCGACCACTCCCTCCGCCGCCGCCGCCACCACCATCCCCATCTCCCCCTCCCCCGCCTGTTTACTCTCCTCCTCCACCTCCACCATCCCCACCACCGCCGTCTCCACCTCCACCGTCTCCACCACCGCCAGTTTACTCTCCACCCCCACCTCCACCGTCTCCTCCACCGCCT 1542 48.83 MKSDTHLNIHLFLHFFFFFGTFLLCLSSSSSVPEEFLQASSHGGRGLTDAEAHYIRQRQLLYYRDEFGDRGEEVVVDPKLVFENDRIRNAYIALQAWKQAILSDPLNLTKNWVGSDVCHYKGVFCAPAPDNSSIRTVAGIDLNHGDIAGYLPEELGLLVDLALFHINSNRFCGTVPHKFKNLKLLFELDLSNNRFAGKFPRVVLKLPELKFLDLRFNEFEGTVPKELFDKDLDAIFINHNRFRFDLPENFGNSPVSVIVLANNKFHGCVPGSIGNMTRLNEIILMNNGFRSCLPPEIGFLKNLTVFDVSHNEFFGKLPDTIGGMVSLEQLNVAHNFLSGKIPDSICKLPNLQNFTYSYNFFTGEAPSCLALPDFDDRRNCIPDRPVQRSERQCKSFLSKPVDCSSFGCPSFVAPSPPVVVPSPPPVVVPSPPPVVVPTPSPPVYPPPPPESASHPIYRPLPPPPPPPPSPSPPPPPVYSPPPPPPSPPPPSPPPPSPPPPVYSPPPPPPSPPPP 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28235872 28237693 - MELO3C004550.2.1 Cme05g01968 329031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01968 514 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 19 511 - -
Cme05g01968 514 Gene3D Ribonuclease Inhibitor 253 395 IPR032675 -
Cme05g01968 514 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 4 19 511 - -
Cme05g01968 514 Gene3D Ribonuclease Inhibitor 91 252 IPR032675 -
Cme05g01968 514 Pfam Leucine rich repeat N-terminal domain 93 125 IPR013210 -
Cme05g01968 514 Pfam Leucine rich repeat 163 218 IPR001611 GO:0005515
Cme05g01968 514 SUPERFAMILY L domain-like 91 371 - -
Cme05g01968 514 PRINTS Proline rich extensin signature 409 425 - -
Cme05g01968 514 PRINTS Proline rich extensin signature 443 464 - -
Cme05g01968 514 PRINTS Proline rich extensin signature 469 485 - -
Cme05g01968 514 PRINTS Proline rich extensin signature 430 442 - -
Cme05g01968 514 MobiDBLite consensus disorder prediction 439 514 - -
Cme05g01968 514 Pfam Leucine Rich Repeat 326 348 IPR001611 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme02g01330 Cme05g01968 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00196 Cme-Chr2:1536063 Cme05g01968 Cme-Chr5:28235872 1.65E-101 dispersed
Cme05g01968 Cme-Chr5:28235872 Cme11g02178 Cme-Chr11:29123538 2.52E-140 dispersed
Cme06g01350 Cme-Chr6:11577012 Cme05g01968 Cme-Chr5:28235872 1.82E-88 dispersed
Cme11g02179 Cme-Chr11:29128849 Cme05g01968 Cme-Chr5:28235872 5.86E-130 dispersed
Cme01g00299 Cme-Chr1:2243543 Cme05g01968 Cme-Chr5:28235872 6.08E-134 transposed
Cme06g00581 Cme-Chr6:3740501 Cme05g01968 Cme-Chr5:28235872 8.51E-159 transposed
Cme02g01330 Cme-Chr2:19221068 Cme05g01968 Cme-Chr5:28235872 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01968 - - csv:101210261 783.867