Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme05g01968 | ATGAAGAGCGATACCCATTTAAACATTCATCTTTTCTTACATTTCTTCTTCTTCTTTGGCACTTTTCTTTTGTGCCTTTCTTCTTCTTCTTCTGTACCTGAAGAGTTTCTTCAAGCTTCTAGCCATGGAGGACGTGGTCTGACTGATGCTGAAGCTCATTACATCCGTCAACGCCAACTCCTTTACTACAGAGATGAATTTGGTGACCGTGGTGAAGAAGTCGTCGTCGATCCTAAACTTGTTTTTGAAAACGACAGAATTAGAAATGCTTACATAGCATTACAAGCTTGGAAGCAAGCGATTCTGTCTGACCCTTTAAATCTTACTAAGAATTGGGTTGGATCTGATGTTTGTCACTACAAAGGGGTTTTCTGCGCTCCGGCGCCGGATAATTCGTCGATCCGTACAGTCGCCGGAATTGACCTTAACCACGGCGACATTGCCGGGTACTTGCCGGAGGAGCTTGGTCTGCTTGTGGATCTTGCATTGTTTCATATAAACTCCAATCGGTTCTGTGGGACTGTTCCTCACAAGTTCAAAAACTTGAAGTTGTTGTTCGAGCTGGATCTGAGTAATAATCGCTTCGCCGGGAAGTTCCCTCGGGTGGTTCTTAAGTTGCCGGAGCTGAAGTTTTTGGATCTGAGGTTCAACGAGTTCGAAGGGACGGTTCCTAAGGAGCTTTTTGACAAGGATTTGGACGCCATTTTCATCAACCACAATAGATTCCGGTTTGACTTGCCGGAAAATTTCGGGAACTCGCCGGTTTCGGTTATTGTTCTTGCTAATAACAAATTTCATGGGTGTGTGCCGGGGAGCATTGGGAATATGACGAGATTGAATGAGATTATTCTCATGAATAATGGCTTTCGATCGTGTTTGCCGCCGGAGATTGGGTTTCTGAAAAATTTGACAGTGTTTGATGTGAGTCACAATGAGTTTTTTGGGAAGTTGCCGGACACGATCGGTGGAATGGTGAGTTTGGAGCAGCTGAATGTGGCGCATAATTTCTTGTCAGGGAAGATTCCGGACAGTATTTGTAAATTGCCGAATCTGCAGAACTTTACTTACTCTTATAATTTCTTTACGGGAGAAGCGCCGTCGTGCTTGGCGTTGCCGGACTTTGATGATCGGAGGAACTGTATACCAGACCGACCGGTTCAACGCTCTGAGAGGCAATGTAAGTCGTTCTTGTCTAAGCCTGTGGATTGCAGTTCTTTTGGATGTCCATCTTTTGTTGCTCCGTCGCCACCTGTGGTGGTGCCATCGCCGCCACCTGTGGTGGTCCCTTCTCCGCCACCTGTTGTTGTACCAACACCATCGCCACCTGTTTACCCTCCACCGCCACCTGAATCCGCTTCTCATCCCATTTACCGACCACTCCCTCCGCCGCCGCCGCCACCACCATCCCCATCTCCCCCTCCCCCGCCTGTTTACTCTCCTCCTCCACCTCCACCATCCCCACCACCGCCGTCTCCACCTCCACCGTCTCCACCACCGCCAGTTTACTCTCCACCCCCACCTCCACCGTCTCCTCCACCGCCT | 1542 | 48.83 | MKSDTHLNIHLFLHFFFFFGTFLLCLSSSSSVPEEFLQASSHGGRGLTDAEAHYIRQRQLLYYRDEFGDRGEEVVVDPKLVFENDRIRNAYIALQAWKQAILSDPLNLTKNWVGSDVCHYKGVFCAPAPDNSSIRTVAGIDLNHGDIAGYLPEELGLLVDLALFHINSNRFCGTVPHKFKNLKLLFELDLSNNRFAGKFPRVVLKLPELKFLDLRFNEFEGTVPKELFDKDLDAIFINHNRFRFDLPENFGNSPVSVIVLANNKFHGCVPGSIGNMTRLNEIILMNNGFRSCLPPEIGFLKNLTVFDVSHNEFFGKLPDTIGGMVSLEQLNVAHNFLSGKIPDSICKLPNLQNFTYSYNFFTGEAPSCLALPDFDDRRNCIPDRPVQRSERQCKSFLSKPVDCSSFGCPSFVAPSPPVVVPSPPPVVVPSPPPVVVPTPSPPVYPPPPPESASHPIYRPLPPPPPPPPSPSPPPPPVYSPPPPPPSPPPPSPPPPSPPPPVYSPPPPPPSPPPP | 514 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 28235872 | 28237693 | - | MELO3C004550.2.1 | Cme05g01968 | 329031 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme05g01968 | 514 | PANTHER | LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED | 19 | 511 | - | - | |
Cme05g01968 | 514 | Gene3D | Ribonuclease Inhibitor | 253 | 395 | IPR032675 | - | |
Cme05g01968 | 514 | PANTHER | LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 4 | 19 | 511 | - | - | |
Cme05g01968 | 514 | Gene3D | Ribonuclease Inhibitor | 91 | 252 | IPR032675 | - | |
Cme05g01968 | 514 | Pfam | Leucine rich repeat N-terminal domain | 93 | 125 | IPR013210 | - | |
Cme05g01968 | 514 | Pfam | Leucine rich repeat | 163 | 218 | IPR001611 | GO:0005515 | |
Cme05g01968 | 514 | SUPERFAMILY | L domain-like | 91 | 371 | - | - | |
Cme05g01968 | 514 | PRINTS | Proline rich extensin signature | 409 | 425 | - | - | |
Cme05g01968 | 514 | PRINTS | Proline rich extensin signature | 443 | 464 | - | - | |
Cme05g01968 | 514 | PRINTS | Proline rich extensin signature | 469 | 485 | - | - | |
Cme05g01968 | 514 | PRINTS | Proline rich extensin signature | 430 | 442 | - | - | |
Cme05g01968 | 514 | MobiDBLite | consensus disorder prediction | 439 | 514 | - | - | |
Cme05g01968 | 514 | Pfam | Leucine Rich Repeat | 326 | 348 | IPR001611 | GO:0005515 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cme02g01330 | Cme05g01968 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme02g00196 | Cme-Chr2:1536063 | Cme05g01968 | Cme-Chr5:28235872 | 1.65E-101 | dispersed | |
Cme05g01968 | Cme-Chr5:28235872 | Cme11g02178 | Cme-Chr11:29123538 | 2.52E-140 | dispersed | |
Cme06g01350 | Cme-Chr6:11577012 | Cme05g01968 | Cme-Chr5:28235872 | 1.82E-88 | dispersed | |
Cme11g02179 | Cme-Chr11:29128849 | Cme05g01968 | Cme-Chr5:28235872 | 5.86E-130 | dispersed | |
Cme01g00299 | Cme-Chr1:2243543 | Cme05g01968 | Cme-Chr5:28235872 | 6.08E-134 | transposed | |
Cme06g00581 | Cme-Chr6:3740501 | Cme05g01968 | Cme-Chr5:28235872 | 8.51E-159 | transposed | |
Cme02g01330 | Cme-Chr2:19221068 | Cme05g01968 | Cme-Chr5:28235872 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme05g01968 | - | - | csv:101210261 | 783.867 |