Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme05g01976 | ATGTCAACCCCTACTCCGGCGCCGACGTCTCCGCCGGCGACCAATACGACGTCCCCACCGCCACCAACCCCTACTGCTCCGCCCCCATCGACTCCAGCACAACCGCCGCCGTCCACTACACCACCACCAACTACCACTCCGTCGCCACCTCCGCCTTCCACTGCATCGCCACCCGCTCCTTCGCAGCCTCCGCCAACTTCCGCACCACCTCCGGCCACCCCATCACGGCCTCCGCCGTCTACTCCAGAGCCCGCCCCGCCCACTGCTTCTCCTTCACCTCCGGCTTCCACTCCTCCGCCGTCCAGACCTTCGAGTTCTCCACCTCCTACGTCTTCTACTACCCCTCCGTCTCCCCCAACTGGCCGTAGTCCGCCGCCTCCGAGTTCTCATACGCCGTCTACTCCGTCCAGAACTCCTCCTCCTCCTCCCTCAACGCCGTCCTCCTCCTCGTCTAATATATCAACCGGACTTGTCGTCGGGATAGCAATTGGTGGAGTGGTAATTGTTCTTCTGCTGAGTATATTATGCCTTTGTTGTACAAAGAAAAGAAGAAGACGACGGGATGAAGAGGGATTTTATCCACACCCTCCGCCTGACCCTAAAGTTGACCCTTATGCTGGTCAGCAGCAATGGCAGAACAATGCTCCTCTGCCGCCTGATCCTTTAGTTGGGATGGTGCCGAAGCCATCTCCTCCACCGGTAGTTGCATCCCGACCCCCGCATTCACCAACCGGCGTTCGTCCTCCACTTCCACCTCCGCTCTATATGAGTAGCAGTGGAGGTTCGGGCTCTATGTATTCTGGGCCTGAAACACCGCTCCCTCCGCCACCTCCCCCTCATATGGCCTTTGGTTTCTCAAAGAGTACTTTTACTTATGAGGAATTGGCAATGGCCACGGACGGCTTCTCGGATGCGAATCTCCTTGGACAAGGTGGATTTGGATATGTGCATAGGGGAGTTCTTCCCAATGGTAAGGAAGTTGCTGTCAAGCAATTGAAAGCTGGGAGTGGACAGGGCGAACGAGAATTTCAAGCCGAAGTTGATATCATCAGCCGAGTTCATCATAAACATCTTGTTTCTTTGGTTGGATATTGCATAACTGGGTCTCAAAGATTGCTTGTTTATGAGTTTGTTGCTAACAACACTTTGGAGTTCCATTTACATGGTAAAGGGCGGCCGACTATGGATTGGCAGACAAGACTCAAAATTGCTTTAGGATCAGCAAAAGGACTAGCTTATATTCATGAGGATTGTCACCCAAAAATCATTCATCGCGACATTAAAGCTGCTAACATATTGTTGGATTTCAAGTTTGAAGCAAAGGTTGCTGATTTTGGACTTGCAAAGTTTACCTCTGATGTCAATACCCATGTATCAACTCGAGTGATGGGTACTTTTGGGTATGGCCTTTCTCGAATCCTGTATCTTGCTCCAGAGTATGCCTCGAGCGGCAAACTTACTGAGAAATCAGATGTTTTCTCCTTTGGAGTTATGCTTTTAGAGTTGATTACCGGTCGTCGACCAGTCGATATGAGTAATACTGCTATGGAAGATAGCCTCGTAGACTGGGCTAGGCCGCTAATGAACCGAGCTTTAGAAGATGGAAACTTCGATGTTTTGGTTGATCCAAGGCTGCAGAACAACTACAACCACAATGAAATGGCTCGCATGGTTGCCTGTGCTGCTGCTTGTGTTCGTCATTCTGCCAAGCGTCGACCACGAATGAGTCAGGTAGTACGAGCGCTCGAAGGAGACTCTTCACTATCGGATCTCAACGAAGGAGTGAAACCCGGGCAGAGCTCGATGTACAGTTCTCATGGAAGCTCAGACTACGACACCCATCAGTACAACGAGGACTTGAGAAAGTTTAGAAAGATGGCACTGGGAAGCACAGAATATGGAGCGAGCAGCGAATACAGCGGACCAACGAGCGAGTACGGGCTGTATCCATCGGGATCAAGCAGCGAAGGGCAAACCACAAGAGAAATGGAGACGAGAACAGCAAAGAAAGAGAGTGGAGGCTTTAGTGGACGCTCTTGA | 2040 | 51.57 | MSTPTPAPTSPPATNTTSPPPPTPTAPPPSTPAQPPPSTTPPPTTTPSPPPPSTASPPAPSQPPPTSAPPPATPSRPPPSTPEPAPPTASPSPPASTPPPSRPSSSPPPTSSTTPPSPPTGRSPPPPSSHTPSTPSRTPPPPPSTPSSSSSNISTGLVVGIAIGGVVIVLLLSILCLCCTKKRRRRRDEEGFYPHPPPDPKVDPYAGQQQWQNNAPLPPDPLVGMVPKPSPPPVVASRPPHSPTGVRPPLPPPLYMSSSGGSGSMYSGPETPLPPPPPPHMAFGFSKSTFTYEELAMATDGFSDANLLGQGGFGYVHRGVLPNGKEVAVKQLKAGSGQGEREFQAEVDIISRVHHKHLVSLVGYCITGSQRLLVYEFVANNTLEFHLHGKGRPTMDWQTRLKIALGSAKGLAYIHEDCHPKIIHRDIKAANILLDFKFEAKVADFGLAKFTSDVNTHVSTRVMGTFGYGLSRILYLAPEYASSGKLTEKSDVFSFGVMLLELITGRRPVDMSNTAMEDSLVDWARPLMNRALEDGNFDVLVDPRLQNNYNHNEMARMVACAAACVRHSAKRRPRMSQVVRALEGDSSLSDLNEGVKPGQSSMYSSHGSSDYDTHQYNEDLRKFRKMALGSTEYGASSEYSGPTSEYGLYPSGSSSEGQTTREMETRTAKKESGGFSGRS | 679 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 28312913 | 28316569 | + | MELO3C004558.2.1 | Cme05g01976 | 329039 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme05g01976 | 679 | MobiDBLite | consensus disorder prediction | 220 | 255 | - | - | |
Cme05g01976 | 679 | MobiDBLite | consensus disorder prediction | 633 | 661 | - | - | |
Cme05g01976 | 679 | Gene3D | Phosphorylase Kinase; domain 1 | 279 | 377 | - | - | |
Cme05g01976 | 679 | MobiDBLite | consensus disorder prediction | 592 | 611 | - | - | |
Cme05g01976 | 679 | Pfam | Protein tyrosine and serine/threonine kinase | 307 | 582 | IPR001245 | GO:0004672|GO:0006468 | |
Cme05g01976 | 679 | MobiDBLite | consensus disorder prediction | 588 | 613 | - | - | |
Cme05g01976 | 679 | SMART | serkin_6 | 302 | 545 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme05g01976 | 679 | PRINTS | Proline rich extensin signature | 39 | 56 | - | - | |
Cme05g01976 | 679 | PRINTS | Proline rich extensin signature | 1 | 22 | - | - | |
Cme05g01976 | 679 | PRINTS | Proline rich extensin signature | 22 | 38 | - | - | |
Cme05g01976 | 679 | MobiDBLite | consensus disorder prediction | 185 | 276 | - | - | |
Cme05g01976 | 679 | Gene3D | Transferase(Phosphotransferase) domain 1 | 378 | 595 | - | - | |
Cme05g01976 | 679 | PANTHER | SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED | 63 | 665 | - | - | |
Cme05g01976 | 679 | SUPERFAMILY | Protein kinase-like (PK-like) | 277 | 582 | IPR011009 | - | |
Cme05g01976 | 679 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 63 | 665 | - | - | |
Cme05g01976 | 679 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 422 | 434 | IPR008271 | GO:0004672|GO:0006468 | |
Cme05g01976 | 679 | ProSiteProfiles | Protein kinase domain profile. | 302 | 588 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme05g01976 | 679 | MobiDBLite | consensus disorder prediction | 1 | 152 | - | - | |
Cme05g01976 | 679 | MobiDBLite | consensus disorder prediction | 1 | 147 | - | - | |
Cme05g01976 | 679 | MobiDBLite | consensus disorder prediction | 632 | 679 | - | - | |
Cme05g01976 | 679 | ProSitePatterns | Protein kinases ATP-binding region signature. | 308 | 330 | IPR017441 | GO:0005524 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cme02g01367 | Cme05g01976 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme04g00634 | Cme-Chr4:6199318 | Cme05g01976 | Cme-Chr5:28312913 | 2.66E-77 | dispersed | |
Cme05g01976 | Cme-Chr5:28312913 | Cme07g01715 | Cme-Chr7:22658448 | 0 | dispersed | |
Cme07g02042 | Cme-Chr7:25371704 | Cme05g01976 | Cme-Chr5:28312913 | 1.18E-91 | dispersed | |
Cme02g01580 | Cme-Chr2:22854747 | Cme05g01976 | Cme-Chr5:28312913 | 3.02E-72 | transposed | |
Cme02g01367 | Cme-Chr2:19773821 | Cme05g01976 | Cme-Chr5:28312913 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
64911 | PF07714 | PK_Tyr_Ser-Thr | 8.80E-45 | CL0016 | Cme | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme05g01976 | - | - | csv:101208385 | 907.901 |