Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01976 ATGTCAACCCCTACTCCGGCGCCGACGTCTCCGCCGGCGACCAATACGACGTCCCCACCGCCACCAACCCCTACTGCTCCGCCCCCATCGACTCCAGCACAACCGCCGCCGTCCACTACACCACCACCAACTACCACTCCGTCGCCACCTCCGCCTTCCACTGCATCGCCACCCGCTCCTTCGCAGCCTCCGCCAACTTCCGCACCACCTCCGGCCACCCCATCACGGCCTCCGCCGTCTACTCCAGAGCCCGCCCCGCCCACTGCTTCTCCTTCACCTCCGGCTTCCACTCCTCCGCCGTCCAGACCTTCGAGTTCTCCACCTCCTACGTCTTCTACTACCCCTCCGTCTCCCCCAACTGGCCGTAGTCCGCCGCCTCCGAGTTCTCATACGCCGTCTACTCCGTCCAGAACTCCTCCTCCTCCTCCCTCAACGCCGTCCTCCTCCTCGTCTAATATATCAACCGGACTTGTCGTCGGGATAGCAATTGGTGGAGTGGTAATTGTTCTTCTGCTGAGTATATTATGCCTTTGTTGTACAAAGAAAAGAAGAAGACGACGGGATGAAGAGGGATTTTATCCACACCCTCCGCCTGACCCTAAAGTTGACCCTTATGCTGGTCAGCAGCAATGGCAGAACAATGCTCCTCTGCCGCCTGATCCTTTAGTTGGGATGGTGCCGAAGCCATCTCCTCCACCGGTAGTTGCATCCCGACCCCCGCATTCACCAACCGGCGTTCGTCCTCCACTTCCACCTCCGCTCTATATGAGTAGCAGTGGAGGTTCGGGCTCTATGTATTCTGGGCCTGAAACACCGCTCCCTCCGCCACCTCCCCCTCATATGGCCTTTGGTTTCTCAAAGAGTACTTTTACTTATGAGGAATTGGCAATGGCCACGGACGGCTTCTCGGATGCGAATCTCCTTGGACAAGGTGGATTTGGATATGTGCATAGGGGAGTTCTTCCCAATGGTAAGGAAGTTGCTGTCAAGCAATTGAAAGCTGGGAGTGGACAGGGCGAACGAGAATTTCAAGCCGAAGTTGATATCATCAGCCGAGTTCATCATAAACATCTTGTTTCTTTGGTTGGATATTGCATAACTGGGTCTCAAAGATTGCTTGTTTATGAGTTTGTTGCTAACAACACTTTGGAGTTCCATTTACATGGTAAAGGGCGGCCGACTATGGATTGGCAGACAAGACTCAAAATTGCTTTAGGATCAGCAAAAGGACTAGCTTATATTCATGAGGATTGTCACCCAAAAATCATTCATCGCGACATTAAAGCTGCTAACATATTGTTGGATTTCAAGTTTGAAGCAAAGGTTGCTGATTTTGGACTTGCAAAGTTTACCTCTGATGTCAATACCCATGTATCAACTCGAGTGATGGGTACTTTTGGGTATGGCCTTTCTCGAATCCTGTATCTTGCTCCAGAGTATGCCTCGAGCGGCAAACTTACTGAGAAATCAGATGTTTTCTCCTTTGGAGTTATGCTTTTAGAGTTGATTACCGGTCGTCGACCAGTCGATATGAGTAATACTGCTATGGAAGATAGCCTCGTAGACTGGGCTAGGCCGCTAATGAACCGAGCTTTAGAAGATGGAAACTTCGATGTTTTGGTTGATCCAAGGCTGCAGAACAACTACAACCACAATGAAATGGCTCGCATGGTTGCCTGTGCTGCTGCTTGTGTTCGTCATTCTGCCAAGCGTCGACCACGAATGAGTCAGGTAGTACGAGCGCTCGAAGGAGACTCTTCACTATCGGATCTCAACGAAGGAGTGAAACCCGGGCAGAGCTCGATGTACAGTTCTCATGGAAGCTCAGACTACGACACCCATCAGTACAACGAGGACTTGAGAAAGTTTAGAAAGATGGCACTGGGAAGCACAGAATATGGAGCGAGCAGCGAATACAGCGGACCAACGAGCGAGTACGGGCTGTATCCATCGGGATCAAGCAGCGAAGGGCAAACCACAAGAGAAATGGAGACGAGAACAGCAAAGAAAGAGAGTGGAGGCTTTAGTGGACGCTCTTGA 2040 51.57 MSTPTPAPTSPPATNTTSPPPPTPTAPPPSTPAQPPPSTTPPPTTTPSPPPPSTASPPAPSQPPPTSAPPPATPSRPPPSTPEPAPPTASPSPPASTPPPSRPSSSPPPTSSTTPPSPPTGRSPPPPSSHTPSTPSRTPPPPPSTPSSSSSNISTGLVVGIAIGGVVIVLLLSILCLCCTKKRRRRRDEEGFYPHPPPDPKVDPYAGQQQWQNNAPLPPDPLVGMVPKPSPPPVVASRPPHSPTGVRPPLPPPLYMSSSGGSGSMYSGPETPLPPPPPPHMAFGFSKSTFTYEELAMATDGFSDANLLGQGGFGYVHRGVLPNGKEVAVKQLKAGSGQGEREFQAEVDIISRVHHKHLVSLVGYCITGSQRLLVYEFVANNTLEFHLHGKGRPTMDWQTRLKIALGSAKGLAYIHEDCHPKIIHRDIKAANILLDFKFEAKVADFGLAKFTSDVNTHVSTRVMGTFGYGLSRILYLAPEYASSGKLTEKSDVFSFGVMLLELITGRRPVDMSNTAMEDSLVDWARPLMNRALEDGNFDVLVDPRLQNNYNHNEMARMVACAAACVRHSAKRRPRMSQVVRALEGDSSLSDLNEGVKPGQSSMYSSHGSSDYDTHQYNEDLRKFRKMALGSTEYGASSEYSGPTSEYGLYPSGSSSEGQTTREMETRTAKKESGGFSGRS 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28312913 28316569 + MELO3C004558.2.1 Cme05g01976 329039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01976 679 MobiDBLite consensus disorder prediction 220 255 - -
Cme05g01976 679 MobiDBLite consensus disorder prediction 633 661 - -
Cme05g01976 679 Gene3D Phosphorylase Kinase; domain 1 279 377 - -
Cme05g01976 679 MobiDBLite consensus disorder prediction 592 611 - -
Cme05g01976 679 Pfam Protein tyrosine and serine/threonine kinase 307 582 IPR001245 GO:0004672|GO:0006468
Cme05g01976 679 MobiDBLite consensus disorder prediction 588 613 - -
Cme05g01976 679 SMART serkin_6 302 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g01976 679 PRINTS Proline rich extensin signature 39 56 - -
Cme05g01976 679 PRINTS Proline rich extensin signature 1 22 - -
Cme05g01976 679 PRINTS Proline rich extensin signature 22 38 - -
Cme05g01976 679 MobiDBLite consensus disorder prediction 185 276 - -
Cme05g01976 679 Gene3D Transferase(Phosphotransferase) domain 1 378 595 - -
Cme05g01976 679 PANTHER SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 63 665 - -
Cme05g01976 679 SUPERFAMILY Protein kinase-like (PK-like) 277 582 IPR011009 -
Cme05g01976 679 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 63 665 - -
Cme05g01976 679 ProSitePatterns Serine/Threonine protein kinases active-site signature. 422 434 IPR008271 GO:0004672|GO:0006468
Cme05g01976 679 ProSiteProfiles Protein kinase domain profile. 302 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g01976 679 MobiDBLite consensus disorder prediction 1 152 - -
Cme05g01976 679 MobiDBLite consensus disorder prediction 1 147 - -
Cme05g01976 679 MobiDBLite consensus disorder prediction 632 679 - -
Cme05g01976 679 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme02g01367 Cme05g01976 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00634 Cme-Chr4:6199318 Cme05g01976 Cme-Chr5:28312913 2.66E-77 dispersed
Cme05g01976 Cme-Chr5:28312913 Cme07g01715 Cme-Chr7:22658448 0 dispersed
Cme07g02042 Cme-Chr7:25371704 Cme05g01976 Cme-Chr5:28312913 1.18E-91 dispersed
Cme02g01580 Cme-Chr2:22854747 Cme05g01976 Cme-Chr5:28312913 3.02E-72 transposed
Cme02g01367 Cme-Chr2:19773821 Cme05g01976 Cme-Chr5:28312913 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64911 PF07714 PK_Tyr_Ser-Thr 8.80E-45 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01976 - - csv:101208385 907.901