Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01983 ATGGGGGAAGAAGATTCCGTGGGTGCGTCTCAGAAGAAGGCTCAATCAGATGGTGCAACGTTGAGTAATTCTTCGTCATCTGATATTCCCTCTAAGAAGCTCGCTAGGCAGCTCGATTTCACCGGCTATGGAGGGGCCTCGAATCCTCAATCTCATTCAAACTCGCATTCACAGTCACAGGCTCCATTAGTTGCTCAGAATCTTCCGCAAGCTCAACCAAAGCCACAGACGCAGATGGTGGCGGCGTCAATCGCACCTTTGGCGCCTCATTCGTCAGTACGAGCTGTATTAGATTTAGAATCCTTGGCCGTTGGAGCTGTTGACATGGAAGGACAATCCAATTTTGTAAATGAGGAGCTCATCAAAACGAAACCAGAATCACCAATGTCAAGAGCAAGACCTGCTATGGAAGCTAAAGACAGTACTCCTAAGAAGCAAAAACAGTGTAACTGTAAACATTCGCGGTACTGTGAATGCTTTGCTTCTGGAATATACTGTGATGGTTGCAACTGCATCAATTGTTATAACAATGTTGAGAATGATGCTGCTAGAAGAGAAGCAGTTGAAGCTACATTAGAGCGTAATCCAAATGCATTTCGACCAAAAATTGCGAGCAGCCCTCATGGGATGCGGGACAGTAGGGAGGAGGCGGGGGAGTTGTTGATGTTGGGTAAACACAATAAGGGATGCCACTGCAAGAAATCAGGTTGTCTTAAAAAATATTGTGAGTGTTTCCAGGCCAACATTCTCTGTTCGGAAAACTGTAAATGCATGGATTGCAAGAATTTTGAGGGAAGTGAAGAGAGGCAAGCTCTTTTCCATGGAGACCATGGTAGCAACATGACATTCATTCAACAGGCAGCTAATGCTGCCATAACCGGAGCTATTGGGTCCTCTGGCTATGCCTCACCTCCTGTATCCAAGAAAAGAAAAGGTCAAGAACTCTACTTTGGACCAACAGCCAAAGACATATCCACTCATCGACCAGGGCCATTTCAACAGGTAAATCATATTAGAGCCACTGCCCCTCCATTACCGTCCTTCCCTATTGCTGGTGTTGGAAGCCCGTCAGTGTTGGGGCCTTCAAAGTTTACATATAGGTCTTTAATGGCAGACATCATTCAATCACAAGATTTGAAGGATCTTTGCTCTGTTTTGGTTGTGCTGTCAAGTGAAGCTGCCAAGACAATTCAAGACCAAACAAGTGCTACAGAAAAGCAATCAGACGGCCAGACGGAAACTTCTGTTGCATCATCCACTCAAGATGGGCAGAAAAAAGATGCATCTGATGAGAAGTCTGCAGCCGATGATCGTTCAAGTGCGAACCAGGCTGATAAAACCACCCCCGATGATTCCAATTCAGATGGTGGAGATGTGCCAAAGGGCGCACCCATGTCTCCTGGAACTTTAGCTTTGATGTGTGATGAGCAAGATACGATGCTAATGGCTGCTGCTTCTCCCAATAGACTAATGGGTCCTGGCTGCAGCACCTCTTCACAACTGCCTCATGGACGAGACACGTCAGAGGTCTATGCAGAGCAGGAGAGGATCGTCCTTACAAAGTTTAGGGATTGTCTTAATAGACTCATCACTTTAGGAGAAATAAAAGAACTGATGGGCAGTGCTATTTTCTTTTTCATTGCAGAGACAAAATGTTCATCTTTAGCCAGAAGTGAAGTAGGTAACGAAGAACAACAATTTAACAATGGCACTACAAATTCTAAAACCGAAACTCAAAGTAATTTGGGCCAACTCAACAACAATAAAGTCACAAAACCTTCGATTACACCGTCAGTGAAGACATCTCAGACAGTAACTCCAGCAGTCATGACCCTTAGTAACGACCAGCGACAGAAAGTTTTGCCTCTGTCTTGA 1875 45.07 MGEEDSVGASQKKAQSDGATLSNSSSSDIPSKKLARQLDFTGYGGASNPQSHSNSHSQSQAPLVAQNLPQAQPKPQTQMVAASIAPLAPHSSVRAVLDLESLAVGAVDMEGQSNFVNEELIKTKPESPMSRARPAMEAKDSTPKKQKQCNCKHSRYCECFASGIYCDGCNCINCYNNVENDAARREAVEATLERNPNAFRPKIASSPHGMRDSREEAGELLMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHGSNMTFIQQAANAAITGAIGSSGYASPPVSKKRKGQELYFGPTAKDISTHRPGPFQQVNHIRATAPPLPSFPIAGVGSPSVLGPSKFTYRSLMADIIQSQDLKDLCSVLVVLSSEAAKTIQDQTSATEKQSDGQTETSVASSTQDGQKKDASDEKSAADDRSSANQADKTTPDDSNSDGGDVPKGAPMSPGTLALMCDEQDTMLMAAASPNRLMGPGCSTSSQLPHGRDTSEVYAEQERIVLTKFRDCLNRLITLGEIKELMGSAIFFFIAETKCSSLARSEVGNEEQQFNNGTTNSKTETQSNLGQLNNNKVTKPSITPSVKTSQTVTPAVMTLSNDQRQKVLPLS 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28358443 28362894 - MELO3C004566.2.1 Cme05g01983 329046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01983 624 MobiDBLite consensus disorder prediction 396 470 - -
Cme05g01983 624 MobiDBLite consensus disorder prediction 424 439 - -
Cme05g01983 624 MobiDBLite consensus disorder prediction 43 61 - -
Cme05g01983 624 SMART CXC_2 144 180 IPR033467 -
Cme05g01983 624 SMART CXC_2 225 266 IPR033467 -
Cme05g01983 624 MobiDBLite consensus disorder prediction 396 423 - -
Cme05g01983 624 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 228 262 IPR005172 -
Cme05g01983 624 MobiDBLite consensus disorder prediction 562 604 - -
Cme05g01983 624 MobiDBLite consensus disorder prediction 9 32 - -
Cme05g01983 624 PANTHER TESMIN/TSO1-RELATED 25 607 IPR028307 -
Cme05g01983 624 ProSiteProfiles CRC domain profile. 145 265 IPR005172 -
Cme05g01983 624 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 25 607 - -
Cme05g01983 624 MobiDBLite consensus disorder prediction 440 454 - -
Cme05g01983 624 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01442 Cme-Chr2:21049451 Cme05g01983 Cme-Chr5:28358443 0 dispersed
Cme05g01983 Cme-Chr5:28358443 Cme06g00586 Cme-Chr6:3762850 8.49E-28 dispersed
Cme05g01983 Cme-Chr5:28358443 Cme05g00473 Cme-Chr5:4351698 2.77E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41385 PF03638 TCR 3.40E-12 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01983 - - csv:101211978 1097.03