Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01984 ATGGGGCCTGATTATGTTGAATCGAATGAGATCTCTCAACCATGTGAGATCAACTCTTCAGATCAAGTACCTTCTTCTCAACCATCTGCAGTTCTTCCCGGAACAGAAAGCTCGGTTCGAGAGGGTAATAGAACTGAAGAGCAAGAGCCAATTAGCAAAGAGGAATATTTTAGAGTTTTAGATGAGTTGAAAGCAAAAAATTCAGCAAATGAATTTGACAAAGAAACATGTACTTATGATGGAGATACTTCTTGCTTAGCAACATGTACCACAAGTGATCTTGAAGATGATCCATTTAAAGGTTCATCATATTCTTATGAAATGGAAGGGGGAGTTCCAGCAGATGATGGACATGGTTCTCTCACTTCATGTGTCGGTACTCGCTGGTTCAGAGCCCCTGAATTACTCTATGGCTCTACAAGCTACGGTTTGGAGATCGATTTGTGGTCATTGGGCTGTATTTTTGCAGAACTTTTAACATTGGAACCCCTTTTTCCAGGAACTGCTGATATAGATCAAATGAGCAGAATTTTTGCTACTCTAGGCAACTTGACTGAAGAGTCGTGGCCAGGTTGTTCCGAACTTCCTGATTTTCAGATTATTTCATTCAACACAATCGAAAAGCCAATTGGTTTAGAAGCATGTCTTACCAACTGTTCTTCTGATGAAATTTCTATTGTTAAAAGACTTCTTTGTTACAACCCGGCTAATCGAGCGACTGCTATGGAGTTGCTACAAGATAAGTATTTCACCAAGGAGCCACTTCCTGTTCCCTTGTCCGAGCTTCACGTTCCTTCGACCAAAAGTGGGCAGGACGAGGATTCTCCTGCAGGATGGTACGACTACAACGAGTCAGATTCTGATATGGATGAAATCGGCCCGATGAATGTTACCACCAATGCCACTGGTTACTCCATACAATTTGATTGA 930 41.61 MGPDYVESNEISQPCEINSSDQVPSSQPSAVLPGTESSVREGNRTEEQEPISKEEYFRVLDELKAKNSANEFDKETCTYDGDTSCLATCTTSDLEDDPFKGSSYSYEMEGGVPADDGHGSLTSCVGTRWFRAPELLYGSTSYGLEIDLWSLGCIFAELLTLEPLFPGTADIDQMSRIFATLGNLTEESWPGCSELPDFQIISFNTIEKPIGLEACLTNCSSDEISIVKRLLCYNPANRATAMELLQDKYFTKEPLPVPLSELHVPSTKSGQDEDSPAGWYDYNESDSDMDEIGPMNVTTNATGYSIQFD 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28364071 28367062 - MELO3C004567.2.1 Cme05g01984 329047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01984 309 SMART serkin_6 34 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g01984 309 MobiDBLite consensus disorder prediction 1 51 - -
Cme05g01984 309 SUPERFAMILY Protein kinase-like (PK-like) 117 256 IPR011009 -
Cme05g01984 309 Gene3D Transferase(Phosphotransferase) domain 1 99 262 - -
Cme05g01984 309 Pfam Protein kinase domain 118 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g01984 309 PANTHER CYCLIN-DEPENDENT KINASE 11A-RELATED 121 262 - -
Cme05g01984 309 ProSiteProfiles Protein kinase domain profile. 1 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g01984 309 PANTHER CELL DIVISION PROTEIN KINASE 121 262 - -
Cme05g01984 309 MobiDBLite consensus disorder prediction 11 39 - -
Cme05g01984 309 MobiDBLite consensus disorder prediction 261 280 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01984 Cme-Chr5:28364071 Cme02g01701 Cme-Chr2:24087177 5.60E-33 dispersed
Cme05g01984 Cme-Chr5:28364071 Cme10g00639 Cme-Chr10:4065775 1.21E-28 transposed
Cme05g01984 Cme-Chr5:28364071 Cme03g02180 Cme-Chr3:28832662 1.36E-28 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64912 PF00069 Pkinase 1.20E-22 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01984 - - csv:101209606 612.068