Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme05g01984 | ATGGGGCCTGATTATGTTGAATCGAATGAGATCTCTCAACCATGTGAGATCAACTCTTCAGATCAAGTACCTTCTTCTCAACCATCTGCAGTTCTTCCCGGAACAGAAAGCTCGGTTCGAGAGGGTAATAGAACTGAAGAGCAAGAGCCAATTAGCAAAGAGGAATATTTTAGAGTTTTAGATGAGTTGAAAGCAAAAAATTCAGCAAATGAATTTGACAAAGAAACATGTACTTATGATGGAGATACTTCTTGCTTAGCAACATGTACCACAAGTGATCTTGAAGATGATCCATTTAAAGGTTCATCATATTCTTATGAAATGGAAGGGGGAGTTCCAGCAGATGATGGACATGGTTCTCTCACTTCATGTGTCGGTACTCGCTGGTTCAGAGCCCCTGAATTACTCTATGGCTCTACAAGCTACGGTTTGGAGATCGATTTGTGGTCATTGGGCTGTATTTTTGCAGAACTTTTAACATTGGAACCCCTTTTTCCAGGAACTGCTGATATAGATCAAATGAGCAGAATTTTTGCTACTCTAGGCAACTTGACTGAAGAGTCGTGGCCAGGTTGTTCCGAACTTCCTGATTTTCAGATTATTTCATTCAACACAATCGAAAAGCCAATTGGTTTAGAAGCATGTCTTACCAACTGTTCTTCTGATGAAATTTCTATTGTTAAAAGACTTCTTTGTTACAACCCGGCTAATCGAGCGACTGCTATGGAGTTGCTACAAGATAAGTATTTCACCAAGGAGCCACTTCCTGTTCCCTTGTCCGAGCTTCACGTTCCTTCGACCAAAAGTGGGCAGGACGAGGATTCTCCTGCAGGATGGTACGACTACAACGAGTCAGATTCTGATATGGATGAAATCGGCCCGATGAATGTTACCACCAATGCCACTGGTTACTCCATACAATTTGATTGA | 930 | 41.61 | MGPDYVESNEISQPCEINSSDQVPSSQPSAVLPGTESSVREGNRTEEQEPISKEEYFRVLDELKAKNSANEFDKETCTYDGDTSCLATCTTSDLEDDPFKGSSYSYEMEGGVPADDGHGSLTSCVGTRWFRAPELLYGSTSYGLEIDLWSLGCIFAELLTLEPLFPGTADIDQMSRIFATLGNLTEESWPGCSELPDFQIISFNTIEKPIGLEACLTNCSSDEISIVKRLLCYNPANRATAMELLQDKYFTKEPLPVPLSELHVPSTKSGQDEDSPAGWYDYNESDSDMDEIGPMNVTTNATGYSIQFD | 309 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 28364071 | 28367062 | - | MELO3C004567.2.1 | Cme05g01984 | 329047 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme05g01984 | 309 | SMART | serkin_6 | 34 | 250 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme05g01984 | 309 | MobiDBLite | consensus disorder prediction | 1 | 51 | - | - | |
Cme05g01984 | 309 | SUPERFAMILY | Protein kinase-like (PK-like) | 117 | 256 | IPR011009 | - | |
Cme05g01984 | 309 | Gene3D | Transferase(Phosphotransferase) domain 1 | 99 | 262 | - | - | |
Cme05g01984 | 309 | Pfam | Protein kinase domain | 118 | 250 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme05g01984 | 309 | PANTHER | CYCLIN-DEPENDENT KINASE 11A-RELATED | 121 | 262 | - | - | |
Cme05g01984 | 309 | ProSiteProfiles | Protein kinase domain profile. | 1 | 250 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme05g01984 | 309 | PANTHER | CELL DIVISION PROTEIN KINASE | 121 | 262 | - | - | |
Cme05g01984 | 309 | MobiDBLite | consensus disorder prediction | 11 | 39 | - | - | |
Cme05g01984 | 309 | MobiDBLite | consensus disorder prediction | 261 | 280 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme05g01984 | Cme-Chr5:28364071 | Cme02g01701 | Cme-Chr2:24087177 | 5.60E-33 | dispersed | |
Cme05g01984 | Cme-Chr5:28364071 | Cme10g00639 | Cme-Chr10:4065775 | 1.21E-28 | transposed | |
Cme05g01984 | Cme-Chr5:28364071 | Cme03g02180 | Cme-Chr3:28832662 | 1.36E-28 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
64912 | PF00069 | Pkinase | 1.20E-22 | CL0016 | Cme | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme05g01984 | - | - | csv:101209606 | 612.068 |