Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01995 ATGGCCAACGCCACCGTGCCGGACACCGACTCCGGTGGTGCCAATTCCTCATCCTCGTCTTCGTCCTCGACGTCAGGTTCAATATCGTCTCCATCAAAACAAGCCATTGGTGATCGAAGACCGAAGCGCGGTCGAGAGAGTAGCAACAATAGTGCTCACCCAAGTTACCGCGGCGTCAGAATGAGGGCGTGGGGTAAATGGGTGTCGGAAATTCGAGAGCCGAAGAAAAAGAGTCGGATCTGGCTCGGCACCTTCGCTACACCTGACATGGCGGCACGTGCTCACGACGTAGCTGCCCTTACTATCAAAGGCAATTCCGCCATCCTCAATTTCCCTGAACTCGCCGCCTCATTCCCCCGTCCCGCCTCCTCGTCTCCTCGCGACGTTCAATCCGCTGCCGCTCTTGCTGCTTCAATGCAACTTCCTGACGTCATGATCTCACCTCCACCACCACCGCCATCACCACCCTCATCGCCTCCGTGTTCGTCGTCGTCCGAGTTGGACCAGTCGACACCAGAGGAATTGAGTGAAATTGTAGTATTGCCGAGTTTGGGGACAGGGTACGATGAATCGGCTGAGTCTGTGACCGAGTTCGTGTTTGACGAGTGGCAATATAGCTATGGGCCATGGGATCAAGAAAAGGAAAGCTCAAAAGAAGAAGAAGAAGGTTATGAATACTTTATAGATCAAACGGCAATGGCGGAAAGAGAGTGTGTGATTCCCACTGCATTATTTCAACCTTTATCTTTCTCGTGGTAA 759 52.83 MANATVPDTDSGGANSSSSSSSSTSGSISSPSKQAIGDRRPKRGRESSNNSAHPSYRGVRMRAWGKWVSEIREPKKKSRIWLGTFATPDMAARAHDVAALTIKGNSAILNFPELAASFPRPASSSPRDVQSAAALAASMQLPDVMISPPPPPPSPPSSPPCSSSSELDQSTPEELSEIVVLPSLGTGYDESAESVTEFVFDEWQYSYGPWDQEKESSKEEEEGYEYFIDQTAMAERECVIPTALFQPLSFSW 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28458946 28460018 + MELO3C004579.2.1 Cme05g01995 329058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01995 252 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Cme05g01995 252 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Cme05g01995 252 MobiDBLite consensus disorder prediction 144 160 - -
Cme05g01995 252 SMART rav1_2 55 118 IPR001471 GO:0003700|GO:0006355
Cme05g01995 252 Gene3D AP2/ERF domain 55 113 IPR036955 GO:0003700|GO:0006355
Cme05g01995 252 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 16 235 - -
Cme05g01995 252 ProSiteProfiles AP2/ERF domain profile. 55 112 IPR001471 GO:0003700|GO:0006355
Cme05g01995 252 Pfam AP2 domain 54 104 IPR001471 GO:0003700|GO:0006355
Cme05g01995 252 SUPERFAMILY DNA-binding domain 55 113 IPR016177 GO:0003677
Cme05g01995 252 MobiDBLite consensus disorder prediction 1 59 - -
Cme05g01995 252 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 16 235 - -
Cme05g01995 252 CDD AP2 54 114 IPR001471 GO:0003700|GO:0006355
Cme05g01995 252 MobiDBLite consensus disorder prediction 143 175 - -
Cme05g01995 252 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01743 Cme-Chr3:25983034 Cme05g01995 Cme-Chr5:28458946 1.88E-54 dispersed
Cme04g00177 Cme-Chr4:1321278 Cme05g01995 Cme-Chr5:28458946 2.73E-48 dispersed
Cme05g01995 Cme-Chr5:28458946 Cme09g01717 Cme-Chr9:21805168 1.12E-32 dispersed
Cme08g00586 Cme-Chr8:3731857 Cme05g01995 Cme-Chr5:28458946 4.80E-24 dispersed
Cme09g00063 Cme-Chr9:486047 Cme05g01995 Cme-Chr5:28458946 2.43E-35 dispersed
Cme02g01473 Cme-Chr2:21525077 Cme05g01995 Cme-Chr5:28458946 9.01E-70 transposed
Cme06g02554 Cme-Chr6:32548713 Cme05g01995 Cme-Chr5:28458946 4.28E-46 transposed
Cme09g00124 Cme-Chr9:938958 Cme05g01995 Cme-Chr5:28458946 4.82E-30 transposed
Cme11g02291 Cme-Chr11:29999599 Cme05g01995 Cme-Chr5:28458946 4.64E-39 transposed
Cme04g01127 Cme-Chr4:15385984 Cme05g01995 Cme-Chr5:28458946 1.78E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41386 PF00847 AP2 7.40E-13 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01995 K09286 - csv:101212945 409.068