Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme05g02012 | ATGAAGATGAAGACCAAGACGCCAATGAAGCAGCTCAAGCTCTCTGTTCCCGTTCAAGAAACTTCCATCCGTTCTTTCCTGACTGCAAGTGGAACATTTCATGATGGCAATCTACTCCTGAATCAGAAAGGATTGCGGCTTATATCTGAAGAGAAAGAATCGCAGACTACAGATTCTAAGGAGCTTGATGTTGATTTCTCGCTGGAAGATCTAGAGACTGTGAAAGTTATTGGGAAAGGAAGTGGAGGTGTAGTACAACTTGTTCGACACAAATGGGTTGGAAAATTTTTTGCCTTAAAGGTAATCCAGATGAACATACAAGAGGATATCCGTAAACAGATAGTACAGGAACTGAAAATAAATCAAGCAGCACAATGTTCACATATTGTGGTCTGCTATCATTCTTTCTACCACAACGGTGCCATTTCTCTTGTGCTAGAATACATGGATCGTGGTTCTTTAGCCGATGTAGTCAGACAAGTCAAAACAATTCTTGAACCATATCTCGCAGTTGTTTGTAAACAGGTTTTACAAGGTCTGGTATACTTGCATCATGAGCGACATGTTATACACAGAGACATCAAGCCATCCAATCTACTTGTGAACCATAAAGGTGAGGTCAAAATCACTGATTTTGGAGTAAGTGCAATGCTAGCAAGTTCTATGGGTCAGAGAGATACATTTGTAGGGACTTACAATTACATGTCGCCTGAACGAATTAGCGGGGGAACATATGACTACAGCAGTGATATATGGAGTTTGGGTTTGGTAGTACTTGAATGTGCAATTGGAAGGTTTCCTTATTTGCAATCTGAAGAGCAGCAAAGTTGGCCAAGCTTTTATGAACTCCTTGAGGCAATTGTAGCAAAGCCACCGCCTTCAGCTCCACCGGATCAATTCTCCCCTGAGTTCTGTTCTTTCGTTTCTGCTTGCATAAAGAAGGACCCAAAAGAAAGATCATCATCATTAGATCTTCTGAATCATCCTTTCATCAAGAAATTCGAAGATAAAGACATTGACGTCGGGATTCTCGTCGCCAGCTTGGATCCACCGGTAAGTTTTCCCAGACAACAACAACAATAA | 1083 | 41.27 | MKMKTKTPMKQLKLSVPVQETSIRSFLTASGTFHDGNLLLNQKGLRLISEEKESQTTDSKELDVDFSLEDLETVKVIGKGSGGVVQLVRHKWVGKFFALKVIQMNIQEDIRKQIVQELKINQAAQCSHIVVCYHSFYHNGAISLVLEYMDRGSLADVVRQVKTILEPYLAVVCKQVLQGLVYLHHERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGGTYDYSSDIWSLGLVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVAKPPPSAPPDQFSPEFCSFVSACIKKDPKERSSSLDLLNHPFIKKFEDKDIDVGILVASLDPPVSFPRQQQQ | 360 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 28599809 | 28603287 | - | MELO3C004594.2.1 | Cme05g02012 | 329075 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme05g02012 | 360 | CDD | PKc_MAPKK_plant_like | 69 | 335 | - | - | |
Cme05g02012 | 360 | SMART | serkin_6 | 71 | 331 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme05g02012 | 360 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6 | 3 | 355 | - | - | |
Cme05g02012 | 360 | PANTHER | MITOGEN-ACTIVATED KINASE KINASE KINASE | 3 | 355 | - | - | |
Cme05g02012 | 360 | Gene3D | Transferase(Phosphotransferase) domain 1 | 152 | 348 | - | - | |
Cme05g02012 | 360 | Gene3D | Phosphorylase Kinase; domain 1 | 40 | 150 | - | - | |
Cme05g02012 | 360 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 189 | 201 | IPR008271 | GO:0004672|GO:0006468 | |
Cme05g02012 | 360 | Pfam | Protein kinase domain | 72 | 331 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme05g02012 | 360 | SUPERFAMILY | Protein kinase-like (PK-like) | 69 | 352 | IPR011009 | - | |
Cme05g02012 | 360 | ProSitePatterns | Protein kinases ATP-binding region signature. | 77 | 100 | IPR017441 | GO:0005524 | |
Cme05g02012 | 360 | ProSiteProfiles | Protein kinase domain profile. | 71 | 331 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme04g01845 | Cme-Chr4:26201523 | Cme05g02012 | Cme-Chr5:28599809 | 4.28E-78 | dispersed | |
Cme05g02012 | Cme-Chr5:28599809 | Cme05g02055 | Cme-Chr5:28855837 | 3.75E-137 | dispersed | |
Cme05g02012 | Cme-Chr5:28599809 | Cme02g00272 | Cme-Chr2:2283734 | 3.01E-148 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
64914 | PF00069 | Pkinase | 6.70E-66 | CL0016 | Cme | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme05g02012 | K04368 | - | csv:101218848 | 699.123 |