Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g02012 ATGAAGATGAAGACCAAGACGCCAATGAAGCAGCTCAAGCTCTCTGTTCCCGTTCAAGAAACTTCCATCCGTTCTTTCCTGACTGCAAGTGGAACATTTCATGATGGCAATCTACTCCTGAATCAGAAAGGATTGCGGCTTATATCTGAAGAGAAAGAATCGCAGACTACAGATTCTAAGGAGCTTGATGTTGATTTCTCGCTGGAAGATCTAGAGACTGTGAAAGTTATTGGGAAAGGAAGTGGAGGTGTAGTACAACTTGTTCGACACAAATGGGTTGGAAAATTTTTTGCCTTAAAGGTAATCCAGATGAACATACAAGAGGATATCCGTAAACAGATAGTACAGGAACTGAAAATAAATCAAGCAGCACAATGTTCACATATTGTGGTCTGCTATCATTCTTTCTACCACAACGGTGCCATTTCTCTTGTGCTAGAATACATGGATCGTGGTTCTTTAGCCGATGTAGTCAGACAAGTCAAAACAATTCTTGAACCATATCTCGCAGTTGTTTGTAAACAGGTTTTACAAGGTCTGGTATACTTGCATCATGAGCGACATGTTATACACAGAGACATCAAGCCATCCAATCTACTTGTGAACCATAAAGGTGAGGTCAAAATCACTGATTTTGGAGTAAGTGCAATGCTAGCAAGTTCTATGGGTCAGAGAGATACATTTGTAGGGACTTACAATTACATGTCGCCTGAACGAATTAGCGGGGGAACATATGACTACAGCAGTGATATATGGAGTTTGGGTTTGGTAGTACTTGAATGTGCAATTGGAAGGTTTCCTTATTTGCAATCTGAAGAGCAGCAAAGTTGGCCAAGCTTTTATGAACTCCTTGAGGCAATTGTAGCAAAGCCACCGCCTTCAGCTCCACCGGATCAATTCTCCCCTGAGTTCTGTTCTTTCGTTTCTGCTTGCATAAAGAAGGACCCAAAAGAAAGATCATCATCATTAGATCTTCTGAATCATCCTTTCATCAAGAAATTCGAAGATAAAGACATTGACGTCGGGATTCTCGTCGCCAGCTTGGATCCACCGGTAAGTTTTCCCAGACAACAACAACAATAA 1083 41.27 MKMKTKTPMKQLKLSVPVQETSIRSFLTASGTFHDGNLLLNQKGLRLISEEKESQTTDSKELDVDFSLEDLETVKVIGKGSGGVVQLVRHKWVGKFFALKVIQMNIQEDIRKQIVQELKINQAAQCSHIVVCYHSFYHNGAISLVLEYMDRGSLADVVRQVKTILEPYLAVVCKQVLQGLVYLHHERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGGTYDYSSDIWSLGLVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVAKPPPSAPPDQFSPEFCSFVSACIKKDPKERSSSLDLLNHPFIKKFEDKDIDVGILVASLDPPVSFPRQQQQ 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28599809 28603287 - MELO3C004594.2.1 Cme05g02012 329075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g02012 360 CDD PKc_MAPKK_plant_like 69 335 - -
Cme05g02012 360 SMART serkin_6 71 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g02012 360 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6 3 355 - -
Cme05g02012 360 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 3 355 - -
Cme05g02012 360 Gene3D Transferase(Phosphotransferase) domain 1 152 348 - -
Cme05g02012 360 Gene3D Phosphorylase Kinase; domain 1 40 150 - -
Cme05g02012 360 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Cme05g02012 360 Pfam Protein kinase domain 72 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g02012 360 SUPERFAMILY Protein kinase-like (PK-like) 69 352 IPR011009 -
Cme05g02012 360 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Cme05g02012 360 ProSiteProfiles Protein kinase domain profile. 71 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01845 Cme-Chr4:26201523 Cme05g02012 Cme-Chr5:28599809 4.28E-78 dispersed
Cme05g02012 Cme-Chr5:28599809 Cme05g02055 Cme-Chr5:28855837 3.75E-137 dispersed
Cme05g02012 Cme-Chr5:28599809 Cme02g00272 Cme-Chr2:2283734 3.01E-148 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64914 PF00069 Pkinase 6.70E-66 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g02012 K04368 - csv:101218848 699.123