Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g02012 ATGAAGATGAAGACCAAGACGCCAATGAAGCAGCTCAAGCTCTCTGTTCCCGTTCAAGAAACTTCCATCCGTTCTTTCCTGACTGCAAGTGGAACATTTCATGATGGCAATCTACTCCTGAATCAGAAAGGATTGCGGCTTATATCTGAAGAGAAAGAATCGCAGACTACAGATTCTAAGGAGCTTGATGTTGATTTCTCGCTGGAAGATCTAGAGACTGTGAAAGTTATTGGGAAAGGAAGTGGAGGTGTAGTACAACTTGTTCGACACAAATGGGTTGGAAAATTTTTTGCCTTAAAGGTAATCCAGATGAACATACAAGAGGATATCCGTAAACAGATAGTACAGGAACTGAAAATAAATCAAGCAGCACAATGTTCACATATTGTGGTCTGCTATCATTCTTTCTACCACAACGGTGCCATTTCTCTTGTGCTAGAATACATGGATCGTGGTTCTTTAGCCGATGTAGTCAGACAAGTCAAAACAATTCTTGAACCATATCTCGCAGTTGTTTGTAAACAGGTTTTACAAGGTCTGGTATACTTGCATCATGAGCGACATGTTATACACAGAGACATCAAGCCATCCAATCTACTTGTGAACCATAAAGGTGAGGTCAAAATCACTGATTTTGGAGTAAGTGCAATGCTAGCAAGTTCTATGGGTCAGAGAGATACATTTGTAGGGACTTACAATTACATGTCGCCTGAACGAATTAGCGGGGGAACATATGACTACAGCAGTGATATATGGAGTTTGGGTTTGGTAGTACTTGAATGTGCAATTGGAAGGTTTCCTTATTTGCAATCTGAAGAGCAGCAAAGTTGGCCAAGCTTTTATGAACTCCTTGAGGCAATTGTAGCAAAGCCACCGCCTTCAGCTCCACCGGATCAATTCTCCCCTGAGTTCTGTTCTTTCGTTTCTGCTTGCATAAAGAAGGACCCAAAAGAAAGATCATCATCATTAGATCTTCTGAATCATCCTTTCATCAAGAAATTCGAAGATAAAGACATTGACGTCGGGATTCTCGTCGCCAGCTTGGATCCACCGGTAAGTTTTCCCAGACAACAACAACAATAA 1083 41.27 MKMKTKTPMKQLKLSVPVQETSIRSFLTASGTFHDGNLLLNQKGLRLISEEKESQTTDSKELDVDFSLEDLETVKVIGKGSGGVVQLVRHKWVGKFFALKVIQMNIQEDIRKQIVQELKINQAAQCSHIVVCYHSFYHNGAISLVLEYMDRGSLADVVRQVKTILEPYLAVVCKQVLQGLVYLHHERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGGTYDYSSDIWSLGLVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVAKPPPSAPPDQFSPEFCSFVSACIKKDPKERSSSLDLLNHPFIKKFEDKDIDVGILVASLDPPVSFPRQQQQ 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28599809 28603287 - MELO3C004594.2.1 Cme05g02012 329075

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g02012 360 CDD PKc_MAPKK_plant_like 69 335 - -
Cme05g02012 360 SMART serkin_6 71 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g02012 360 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6 3 355 - -
Cme05g02012 360 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 3 355 - -
Cme05g02012 360 Gene3D Transferase(Phosphotransferase) domain 1 152 348 - -
Cme05g02012 360 Gene3D Phosphorylase Kinase; domain 1 40 150 - -
Cme05g02012 360 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Cme05g02012 360 Pfam Protein kinase domain 72 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g02012 360 SUPERFAMILY Protein kinase-like (PK-like) 69 352 IPR011009 -
Cme05g02012 360 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Cme05g02012 360 ProSiteProfiles Protein kinase domain profile. 71 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g02012 K04368 MAP2K1, MEK1; mitogen-activated protein kinase kinase 1 [EC:2.7.12.2] - csv:101218848 699.123
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01845 Cme-Chr4:26201523 Cme05g02012 Cme-Chr5:28599809 4.28E-78 dispersed
Cme05g02012 Cme-Chr5:28599809 Cme05g02055 Cme-Chr5:28855837 3.75E-137 dispersed
Cme05g02012 Cme-Chr5:28599809 Cme02g00272 Cme-Chr2:2283734 3.01E-148 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g254 Blo01g00529 . Bda01g02038 . . Bpe02g02226 . . . . Cma05g01373 Cma12g01275 Car05g01287 Car12g01246 . . . . . . . . . . Cla11g00183 Cam11g0213 Cec11g0214 . . . . . . . . . Csa02g00082 Chy05g01408 . . . . . . . Bma01g00211 . Sed08g1406 Cmo05g01376 . . . . . Cpe11g01143 . Bhi06g01689 Tan08g0109 Cmetu04g3241 . . . . . . . . . . . Lsi11g00218 . . Cme05g02012
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme02g00272 CCT 28 338 MAP Kinase Kinase Gene Family AT4G26070 67.8 8.9e-127 450.3
Cme05g02055 CCT 7 303 MAP Kinase Kinase Gene Family AT4G26070 67.1 1.2e-115 413.3
Cme05g02012 . 28 353 MAP Kinase Kinase Gene Family AT4G26070 55.3 1.6e-107 386.3
Cme02g00272 CCT 1 311 MAP Kinase Kinase Gene Family AT4G29810 67.8 2.6e-126 448.7
Cme05g02012 . 12 326 MAP Kinase Kinase Gene Family AT4G29810 59.7 2.6e-110 395.6
Cme05g02055 CCT 9 277 MAP Kinase Kinase Gene Family AT4G29810 66.7 1.1e-105 380.2
Cme04g01845 . 115 599 MAP Kinase Kinase Gene Family AT5G40440 78.8 6.6e-227 783.5
Cme04g01310 . 1 366 MAP Kinase Kinase Gene Family AT1G51660 71.7 2.4e-130 462.2
Cme12g01812 . 5 313 MAP Kinase Kinase Gene Family AT1G51660 50.5 1.6e-84 310.1
Cme04g01310 . 1 366 MAP Kinase Kinase Gene Family AT3G21220 68.7 1.5e-129 459.5
Cme12g01812 . 41 311 MAP Kinase Kinase Gene Family AT3G21220 55.0 5.1e-85 311.6
Cme05g02012 . 3 356 MAP Kinase Kinase Gene Family AT5G56580 83.7 8.1e-171 596.7
Cme02g00272 CCT 7 337 MAP Kinase Kinase Gene Family AT5G56580 55.9 2.3e-109 392.5
Cme05g02055 CCT 14 292 MAP Kinase Kinase Gene Family AT5G56580 59.8 2.4e-98 355.9
Cme12g01812 . 1 313 MAP Kinase Kinase Gene Family AT1G18350 63.9 4.4e-109 391.3
Cme04g01310 . 77 334 MAP Kinase Kinase Gene Family AT1G18350 53.2 1.7e-76 283.1
Cme12g01812 . 1 297 MAP Kinase Kinase Gene Family AT3G06230 52.3 1.3e-81 300.1
Cme12g01812 . 1 309 MAP Kinase Kinase Gene Family AT1G73500 66.8 4.6e-114 407.9
Cme04g01310 . 78 334 MAP Kinase Kinase Gene Family AT1G73500 52.7 3.5e-77 285.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007196 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 2 1 2 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64914 PF00069 Pkinase 6.70E-66 CL0016 Cme PK