Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme05g02013 | ATGTCGTGGCAAGTTTACGTCGATGAACATTTGATGTGCGAGATTGAGGGCAATCACCTCACTTCTGCGGCCATTATCGGTCAAGACGGCAGCGTTTGGGCTCAAAGCCAAAATTTCCCTCAGTCCGTCATGGTGATTGATATCGTATGGTGTTTGTTATGTATGGAATTGACAGAAGAATTCGAAGGTTATATGCAGCTCAAGCCTGAAGAAGTTGCTGGCATCGTGGGGGACTTCGCGGACCCTGGGACGCTTGCTCCAACTGGTTTGTACATTGGTGGTACAAAATATATGGTAATCCAAGGGGAGCCTGGAGCTGTTATTCGTGGGAAGAAGGGCCCAGGTGGGGTTACTGTTAAGAAGACTGGTATGGCTTTAGTCATTGGTATCTATGATGAACCAATGACTCCTGGTCAATGCAATATGATTGTTGAAAGGCTTGGGGATTATCTTATTGATCAGGGCCTCTAA | 471 | 46.5 | MSWQVYVDEHLMCEIEGNHLTSAAIIGQDGSVWAQSQNFPQSVMVIDIVWCLLCMELTEEFEGYMQLKPEEVAGIVGDFADPGTLAPTGLYIGGTKYMVIQGEPGAVIRGKKGPGGVTVKKTGMALVIGIYDEPMTPGQCNMIVERLGDYLIDQGL | 156 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 28603802 | 28606525 | - | MELO3C004595.2.1 | Cme05g02013 | 329076 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme05g02013 | 156 | Gene3D | Dynein light chain 2a, cytoplasmic | 1 | 156 | - | - | |
Cme05g02013 | 156 | PRINTS | Profilin signature | 125 | 138 | IPR005455 | GO:0003779 | |
Cme05g02013 | 156 | PRINTS | Profilin signature | 138 | 155 | IPR005455 | GO:0003779 | |
Cme05g02013 | 156 | PRINTS | Profilin signature | 3 | 12 | IPR005455 | GO:0003779 | |
Cme05g02013 | 156 | CDD | PROF | 2 | 155 | IPR005455 | GO:0003779 | |
Cme05g02013 | 156 | Pfam | Profilin | 1 | 155 | IPR005455 | GO:0003779 | |
Cme05g02013 | 156 | PRINTS | Plant profilin signature | 1 | 14 | IPR005455 | GO:0003779 | |
Cme05g02013 | 156 | PRINTS | Plant profilin signature | 27 | 40 | IPR005455 | GO:0003779 | |
Cme05g02013 | 156 | SUPERFAMILY | Profilin (actin-binding protein) | 2 | 155 | IPR036140 | - | |
Cme05g02013 | 156 | SMART | prof_2 | 1 | 156 | IPR005455 | GO:0003779 | |
Cme05g02013 | 156 | ProSitePatterns | Profilin signature. | 1 | 8 | IPR027310 | GO:0003779 | |
Cme05g02013 | 156 | PANTHER | PROFILIN | 1 | 41 | IPR005455 | GO:0003779 | |
Cme05g02013 | 156 | PANTHER | PROFILIN | 64 | 156 | IPR005455 | GO:0003779 | |
Cme05g02013 | 156 | PANTHER | PROFILIN-2 | 1 | 41 | - | - | |
Cme05g02013 | 156 | PANTHER | PROFILIN-2 | 64 | 156 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme05g02013 | Cme-Chr5:28603802 | Cme05g02014 | Cme-Chr5:28607837 | 1.80E-68 | tandem | |
Cme04g01148 | Cme-Chr4:15693733 | Cme05g02013 | Cme-Chr5:28603802 | 1.39E-65 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme05g02013 | K05759 | - | csv:101219562 | 236.884 |