Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g02013 ATGTCGTGGCAAGTTTACGTCGATGAACATTTGATGTGCGAGATTGAGGGCAATCACCTCACTTCTGCGGCCATTATCGGTCAAGACGGCAGCGTTTGGGCTCAAAGCCAAAATTTCCCTCAGTCCGTCATGGTGATTGATATCGTATGGTGTTTGTTATGTATGGAATTGACAGAAGAATTCGAAGGTTATATGCAGCTCAAGCCTGAAGAAGTTGCTGGCATCGTGGGGGACTTCGCGGACCCTGGGACGCTTGCTCCAACTGGTTTGTACATTGGTGGTACAAAATATATGGTAATCCAAGGGGAGCCTGGAGCTGTTATTCGTGGGAAGAAGGGCCCAGGTGGGGTTACTGTTAAGAAGACTGGTATGGCTTTAGTCATTGGTATCTATGATGAACCAATGACTCCTGGTCAATGCAATATGATTGTTGAAAGGCTTGGGGATTATCTTATTGATCAGGGCCTCTAA 471 46.5 MSWQVYVDEHLMCEIEGNHLTSAAIIGQDGSVWAQSQNFPQSVMVIDIVWCLLCMELTEEFEGYMQLKPEEVAGIVGDFADPGTLAPTGLYIGGTKYMVIQGEPGAVIRGKKGPGGVTVKKTGMALVIGIYDEPMTPGQCNMIVERLGDYLIDQGL 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28603802 28606525 - MELO3C004595.2.1 Cme05g02013 329076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g02013 156 Gene3D Dynein light chain 2a, cytoplasmic 1 156 - -
Cme05g02013 156 PRINTS Profilin signature 125 138 IPR005455 GO:0003779
Cme05g02013 156 PRINTS Profilin signature 138 155 IPR005455 GO:0003779
Cme05g02013 156 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Cme05g02013 156 CDD PROF 2 155 IPR005455 GO:0003779
Cme05g02013 156 Pfam Profilin 1 155 IPR005455 GO:0003779
Cme05g02013 156 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Cme05g02013 156 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Cme05g02013 156 SUPERFAMILY Profilin (actin-binding protein) 2 155 IPR036140 -
Cme05g02013 156 SMART prof_2 1 156 IPR005455 GO:0003779
Cme05g02013 156 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Cme05g02013 156 PANTHER PROFILIN 1 41 IPR005455 GO:0003779
Cme05g02013 156 PANTHER PROFILIN 64 156 IPR005455 GO:0003779
Cme05g02013 156 PANTHER PROFILIN-2 1 41 - -
Cme05g02013 156 PANTHER PROFILIN-2 64 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g02013 Cme-Chr5:28603802 Cme05g02014 Cme-Chr5:28607837 1.80E-68 tandem
Cme04g01148 Cme-Chr4:15693733 Cme05g02013 Cme-Chr5:28603802 1.39E-65 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g02013 K05759 - csv:101219562 236.884