Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g02014 ATGTCGTGGCAAACGTATGTTGATGATCATTTGATGTGCGACATTGATGGCCAAGGCCAGCACCTTACCGCCGCTGCCATTGTTGGCCACGACGGCAGCGTTTGGGCTCAGAGCGCCTCATTTCCTCAGTTCAAGTCTGAAGAGATCAATGGTATCATGAAGGATTTTGATGAACCAGGTCATCTTGCACCTACTGGATTACACCTTGGTGGTACAAAGTATATGGTAATCCAAGGAGAGCCTGGAGCGGTCATCCGTGGAAAGAAGGGGTCTGGAGGAATTACTATAAAGAAGACTGGTCAAGCTCTAGTCTTCGGAATCTATGAAGAACCTGTTACTCCAGGACAGTGCAACATGGTTGTTGAGAGGCTTGGCGATTACCTCGTCGATCAGGGTCTGTAG 402 48.76 MSWQTYVDDHLMCDIDGQGQHLTAAAIVGHDGSVWAQSASFPQFKSEEINGIMKDFDEPGHLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMVVERLGDYLVDQGL 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28607837 28609545 - MELO3C004596.2.1 Cme05g02014 329077

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g02014 133 PANTHER PROFILIN 1 133 IPR005455 GO:0003779
Cme05g02014 133 Gene3D Dynein light chain 2a, cytoplasmic 1 133 - -
Cme05g02014 133 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Cme05g02014 133 PRINTS Plant profilin signature 29 42 IPR005455 GO:0003779
Cme05g02014 133 PRINTS Plant profilin signature 54 68 IPR005455 GO:0003779
Cme05g02014 133 PRINTS Plant profilin signature 73 82 IPR005455 GO:0003779
Cme05g02014 133 PRINTS Plant profilin signature 86 101 IPR005455 GO:0003779
Cme05g02014 133 PRINTS Plant profilin signature 106 119 IPR005455 GO:0003779
Cme05g02014 133 PRINTS Plant profilin signature 119 132 IPR005455 GO:0003779
Cme05g02014 133 Pfam Profilin 1 132 IPR005455 GO:0003779
Cme05g02014 133 PANTHER PROFILIN 1 133 - -
Cme05g02014 133 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Cme05g02014 133 PRINTS Profilin signature 23 32 IPR005455 GO:0003779
Cme05g02014 133 PRINTS Profilin signature 42 62 IPR005455 GO:0003779
Cme05g02014 133 PRINTS Profilin signature 66 80 IPR005455 GO:0003779
Cme05g02014 133 PRINTS Profilin signature 102 115 IPR005455 GO:0003779
Cme05g02014 133 PRINTS Profilin signature 115 132 IPR005455 GO:0003779
Cme05g02014 133 CDD PROF 2 132 IPR005455 GO:0003779
Cme05g02014 133 SUPERFAMILY Profilin (actin-binding protein) 2 132 IPR036140 -
Cme05g02014 133 SMART prof_2 1 133 IPR005455 GO:0003779
Cme05g02014 133 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g02014 K05759 PFN; profilin - csv:101219322 266.159
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01148 Cme-Chr4:15693733 Cme05g02014 Cme-Chr5:28607837 4.96E-76 dispersed
Cme05g02013 Cme-Chr5:28603802 Cme05g02014 Cme-Chr5:28607837 1.80E-68 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g251 . . . . Bpe01g00568 Bpe02g02225 . Bma11g00549 . . . . Car05g01289 . . . . . . . . . . . . . . . . . . . . Cone4ag0756 . . Csa02g00079 Chy05g01410 . Blo08g00324 . Bda02g00405 . Bpe08g00505 . . . Sed11g0035 Cmo05g01378 . . . . . Cpe11g01145 . Bhi06g01686 Tan08g0107 Cmetu05g1788 . Hepe08g2631 . . . . . . . . . Lsi11g00216 . . Cme05g02014
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme04g02242 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 7.4e-215 743.0
Cme10g00888 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.8e-213 738.4
Cme08g01062 CCT 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.4e-213 738.0
Cme11g00076 CCT 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.4e-213 738.0
Cme09g00478 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 2.0e-212 734.9
Cme01g00280 . 28 386 Cytoskeleton Gene Families AT2G37620 94.2 3.6e-201 697.6
Cme08g02402 . 1 351 Cytoskeleton Gene Families AT2G37620 90.2 1.0e-195 679.5
Cme09g00478 . 1 377 Cytoskeleton Gene Families AT5G59370 96.8 3.7e-214 740.7
Cme04g02242 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 6.2e-214 740.0
Cme10g00888 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 1.4e-213 738.8
Cme08g01062 CCT 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.2e-210 727.6
Cme11g00076 CCT 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.2e-210 727.6
Cme01g00280 . 28 386 Cytoskeleton Gene Families AT5G59370 92.8 2.4e-197 684.9
Cme08g02402 . 1 351 Cytoskeleton Gene Families AT5G59370 89.9 9.4e-194 672.9
Cme09g00478 . 1 377 Cytoskeleton Gene Families AT3G46520 97.1 1.6e-214 741.9
Cme04g02242 . 1 377 Cytoskeleton Gene Families AT3G46520 97.3 2.8e-214 741.1
Cme10g00888 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 6.2e-214 740.0
Cme08g01062 CCT 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.4e-210 728.8
Cme11g00076 CCT 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.4e-210 728.8
Cme01g00280 . 28 386 Cytoskeleton Gene Families AT3G46520 93.0 1.1e-197 686.0
Cme08g02402 . 1 351 Cytoskeleton Gene Families AT3G46520 90.2 4.2e-194 674.1
Cme04g02242 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 3.3e-215 744.2
Cme10g00888 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 4.3e-215 743.8
Cme09g00478 . 1 377 Cytoskeleton Gene Families AT3G12110 96.0 3.1e-213 737.6
Cme08g01062 CCT 1 377 Cytoskeleton Gene Families AT3G12110 95.5 9.0e-213 736.1
Cme11g00076 CCT 1 377 Cytoskeleton Gene Families AT3G12110 95.5 9.0e-213 736.1
Cme01g00280 . 28 386 Cytoskeleton Gene Families AT3G12110 94.4 2.3e-200 694.9
Cme08g02402 . 1 351 Cytoskeleton Gene Families AT3G12110 89.9 5.0e-195 677.2
Cme08g01062 CCT 1 377 Cytoskeleton Gene Families AT3G18780 93.1 4.6e-209 723.8
Cme09g00478 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 4.6e-209 723.8
Cme11g00076 CCT 1 377 Cytoskeleton Gene Families AT3G18780 93.1 4.6e-209 723.8
Cme04g02242 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 1.8e-208 721.8
Cme10g00888 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 2.3e-208 721.5
Cme01g00280 . 28 386 Cytoskeleton Gene Families AT3G18780 93.0 2.2e-198 688.3
Cme08g02402 . 1 351 Cytoskeleton Gene Families AT3G18780 85.4 1.5e-188 655.6
Cme08g01062 CCT 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.6e-209 725.3
Cme09g00478 . 1 377 Cytoskeleton Gene Families AT1G49240 92.8 1.6e-209 725.3
Cme11g00076 CCT 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.6e-209 725.3
Cme04g02242 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 6.0e-209 723.4
Cme10g00888 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 7.9e-209 723.0
Cme01g00280 . 28 386 Cytoskeleton Gene Families AT1G49240 93.0 2.2e-198 688.3
Cme08g02402 . 1 351 Cytoskeleton Gene Families AT1G49240 85.7 5.3e-189 657.1
Cme08g01062 CCT 1 377 Cytoskeleton Gene Families AT5G09810 98.4 7.9e-217 749.6
Cme11g00076 CCT 1 377 Cytoskeleton Gene Families AT5G09810 98.4 7.9e-217 749.6
Cme04g02242 . 1 377 Cytoskeleton Gene Families AT5G09810 96.6 6.2e-214 740.0
Cme10g00888 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.1e-213 737.6
Cme09g00478 . 1 377 Cytoskeleton Gene Families AT5G09810 95.5 5.8e-212 733.4
Cme01g00280 . 28 386 Cytoskeleton Gene Families AT5G09810 95.3 9.4e-202 699.5
Cme08g02402 . 1 351 Cytoskeleton Gene Families AT5G09810 89.7 2.5e-194 674.9
Cme05g02014 . 1 133 Cytoskeleton Gene Families AT2G19760 76.7 2.4e-56 214.9
Cme04g01148 . 51 181 Cytoskeleton Gene Families AT2G19760 73.3 5.1e-54 207.2
Cme05g02013 . 1 156 Cytoskeleton Gene Families AT2G19760 64.1 3.3e-53 204.5
Cme05g02014 . 1 133 Cytoskeleton Gene Families AT4G29350 75.2 6.0e-55 210.3
Cme04g01148 . 51 181 Cytoskeleton Gene Families AT4G29350 74.0 1.7e-54 208.8
Cme05g02013 . 1 156 Cytoskeleton Gene Families AT4G29350 65.4 3.3e-53 204.5
Cme05g02014 . 1 133 Cytoskeleton Gene Families AT4G29340 85.8 2.9e-65 244.6
Cme04g01148 . 51 181 Cytoskeleton Gene Families AT4G29340 68.7 6.4e-52 200.3
Cme05g02013 . 1 156 Cytoskeleton Gene Families AT4G29340 59.7 2.7e-50 194.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000501 4 6 1 4 4 2 6 4 2 3 2 1 3 3 3 6 2 7 7 3 3 3 2 4 5 5 3 6 4 4 112