Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g02014 ATGTCGTGGCAAACGTATGTTGATGATCATTTGATGTGCGACATTGATGGCCAAGGCCAGCACCTTACCGCCGCTGCCATTGTTGGCCACGACGGCAGCGTTTGGGCTCAGAGCGCCTCATTTCCTCAGTTCAAGTCTGAAGAGATCAATGGTATCATGAAGGATTTTGATGAACCAGGTCATCTTGCACCTACTGGATTACACCTTGGTGGTACAAAGTATATGGTAATCCAAGGAGAGCCTGGAGCGGTCATCCGTGGAAAGAAGGGGTCTGGAGGAATTACTATAAAGAAGACTGGTCAAGCTCTAGTCTTCGGAATCTATGAAGAACCTGTTACTCCAGGACAGTGCAACATGGTTGTTGAGAGGCTTGGCGATTACCTCGTCGATCAGGGTCTGTAG 402 48.76 MSWQTYVDDHLMCDIDGQGQHLTAAAIVGHDGSVWAQSASFPQFKSEEINGIMKDFDEPGHLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMVVERLGDYLVDQGL 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28607837 28609545 - MELO3C004596.2.1 Cme05g02014 329077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g02014 133 PANTHER PROFILIN 1 133 IPR005455 GO:0003779
Cme05g02014 133 Gene3D Dynein light chain 2a, cytoplasmic 1 133 - -
Cme05g02014 133 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Cme05g02014 133 PRINTS Plant profilin signature 29 42 IPR005455 GO:0003779
Cme05g02014 133 PRINTS Plant profilin signature 54 68 IPR005455 GO:0003779
Cme05g02014 133 PRINTS Plant profilin signature 73 82 IPR005455 GO:0003779
Cme05g02014 133 PRINTS Plant profilin signature 86 101 IPR005455 GO:0003779
Cme05g02014 133 PRINTS Plant profilin signature 106 119 IPR005455 GO:0003779
Cme05g02014 133 PRINTS Plant profilin signature 119 132 IPR005455 GO:0003779
Cme05g02014 133 Pfam Profilin 1 132 IPR005455 GO:0003779
Cme05g02014 133 PANTHER PROFILIN 1 133 - -
Cme05g02014 133 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Cme05g02014 133 PRINTS Profilin signature 23 32 IPR005455 GO:0003779
Cme05g02014 133 PRINTS Profilin signature 42 62 IPR005455 GO:0003779
Cme05g02014 133 PRINTS Profilin signature 66 80 IPR005455 GO:0003779
Cme05g02014 133 PRINTS Profilin signature 102 115 IPR005455 GO:0003779
Cme05g02014 133 PRINTS Profilin signature 115 132 IPR005455 GO:0003779
Cme05g02014 133 CDD PROF 2 132 IPR005455 GO:0003779
Cme05g02014 133 SUPERFAMILY Profilin (actin-binding protein) 2 132 IPR036140 -
Cme05g02014 133 SMART prof_2 1 133 IPR005455 GO:0003779
Cme05g02014 133 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01148 Cme-Chr4:15693733 Cme05g02014 Cme-Chr5:28607837 4.96E-76 dispersed
Cme05g02013 Cme-Chr5:28603802 Cme05g02014 Cme-Chr5:28607837 1.80E-68 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g02014 K05759 - csv:101219322 266.159