Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g02021 ATGAAGATCGTTGAATTGGAAGATGCTGGAAATGATCGGGGAAATGAAAAAATCGGTAGTGGTCAGATTGTGAAAGTCGATGCCAAAAGAGCTTTGGTTGGTGCTGGGGCTCGAATCTTGTTTTACCCTACCCTTTTGTATAACGTGCTTCGGAACAAAATGGAAGCTGAATTCAGATGGTGGGATGAAGTTGATCAGTTTCTTTTGCTAGGTGCAGTGCCCTTCCCCAAAGACGTGCCAAGATTGAAGAAGCTTGGTGTCGGTGGTGTTATCACTCTCAATGAACCTTATGAAACTCTAGTTCCATCTTCCTTGTATTACCGCCATGGAATCGATCACTTAAAGATCCCAACAAGAGATTATTGTTTTGCTCCTAAGTTTTCTGATATTAGCCGAGCTGTTGACTTTATTCACAGAAATGCATCATCTGGTAAAACGACATACGTCCATTGTAAAGCAGGACGAGGAAGGAGCACAACCATTGTGCTTTGCTATTTGGTCAAATATAAGCACATGACCCCGTCTGCTGCACTGGACTACGTGCGTTCTAGAAGACCACGTGTGTTGCTCGCCCCCTCACAGTGGGAGGCTGTTCAAGAATACAGCAACCGTGGACCTGTGACAAGTTCTAGCTCACCCTCAGGAGGAGATGCAGTCCTCATTACGAAAGATGATTTAGAAGGATATCACGGTACATGCATCGACAGTGCGGGTAGAGAACTTGCAGTAGTCCCTTGGATGGGTAAGTCAAAGCCGATGATAGCAAGGTTGTCCTGCCTCTTTTCCTCTTTGATAGTTCATGGAAGTACTGGATCTCTTATTAAGCGTCTGCCTGTGCCGGAGGCTCGTGCTTGCTGA 858 45.69 MKIVELEDAGNDRGNEKIGSGQIVKVDAKRALVGAGARILFYPTLLYNVLRNKMEAEFRWWDEVDQFLLLGAVPFPKDVPRLKKLGVGGVITLNEPYETLVPSSLYYRHGIDHLKIPTRDYCFAPKFSDISRAVDFIHRNASSGKTTYVHCKAGRGRSTTIVLCYLVKYKHMTPSAALDYVRSRRPRVLLAPSQWEAVQEYSNRGPVTSSSSPSGGDAVLITKDDLEGYHGTCIDSAGRELAVVPWMGKSKPMIARLSCLFSSLIVHGSTGSLIKRLPVPEARAC 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28637098 28640101 + MELO3C004603.2.1 Cme05g02021 329084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g02021 285 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 128 196 IPR000387 GO:0016311|GO:0016791
Cme05g02021 285 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311|GO:0016791
Cme05g02021 285 CDD PTPMT1 60 204 IPR044596 GO:0004721
Cme05g02021 285 PANTHER - 1 285 - -
Cme05g02021 285 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 53 202 IPR029021 -
Cme05g02021 285 SMART dsp_5 63 204 IPR020422 GO:0006470|GO:0008138
Cme05g02021 285 PANTHER OS01G0739200 PROTEIN 1 285 - -
Cme05g02021 285 Gene3D Protein tyrosine phosphatase superfamily 60 205 IPR029021 -
Cme05g02021 285 ProSiteProfiles Dual specificity protein phosphatase domain profile. 60 207 IPR020422 GO:0006470|GO:0008138
Cme05g02021 285 Pfam Dual specificity phosphatase, catalytic domain 100 203 IPR000340 GO:0008138|GO:0016311
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g02021 Cme-Chr5:28637098 Cme06g02549 Cme-Chr6:32486032 8.32E-72 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g02021 - - csv:101220751 551.206