Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g02028 ATGATCGTCGGCGAGCAGCCCAAACGCACGAATCCAACGGTTCAGATTCCACCCTGGACGTTTTTGGAGGATACGGGGATGGATGTGTACAGTCATTCATCGCCGGGAAGTGGTGGTAGCAGCGGTTCCGTCAAGTGTGACGGATGTTCCAGCGGTGGTGGGTATTCTCCTTATTATCTACAGGAAGCATTAGCGATGTTGAAGCGGTATCTTCCGTCTAATGAGGCGGAGATGGACTCGGATATTGATGTTTCGGGTAAGGAGATGGATTCTCCGGTGGATGCGTACTCCTCTGATCAGTTTAGAATGTATGAGTTCAAAATTAAGAAGTGTACGAGAGGAAGATCGCATGATTGGACTGAGTGTCCGTTTGCTCATCCTGGCGAGAAGGCTCGCCGGCGAGATCCGAGGAGGTATTACTATTCAGGTACGGCGTGTGCGGATTTTCGGAAAGGAAGCTGTGTTAAAGGAGATGCGTGTGAGTTTGCTCATGGAGTTTTCGAGTGCTGGCTTCATCCTGCTCGTTATAGGACTCAGCCGTGCAAGGATGGAACGAGTTGCCGGAGAAGAGTTTGTTTCTTCGCTCATACACCGGAACAACTTAGGGTTTTGCCTCAACAAAGTCCTCGGAGTACGACCTCCATCCCTTCGTACGACGGATCACCTCTCCGACAAGCAATTGAGGCCTGTGCAAAACAAATGCCCTATTTATCATCTCCAGGAACATCGCCACCAGTGTCTCCTCGAATTGAATCTCCACCTCAATCACCGATCATTAAATCACTAAATCGACCTCACGCACCAAGTTCGATCAACGAAATGATTGCATCTCTGCGAAATTTACAACTCAATAAGGAACTCTGTAAGGTACAATCTCCCTCTTCTTCTTCCTCATGGAACGTTCAAGTCGGATCTCCTGTATTCGGATCTCCAAAGGATTCCACCACTCGATCCGGTCTACCTAGCCTTCCAGAAACTTCGACTCCTCCAGGTATCCGATATCTCGATTTCTGGGAACTGGGTATCGGAGAGGAACCGGCGATGGAGCGAGTGGAGTCCGGAAGAGATCTTCGTGCAAAAATGTTCGAGAAATTAAGGAAGGAGAACTCCGTCGGCTGCGGCGATCAGGACAAAAACAGCGGCGGTGCCGGTGGTCTGGATGTCGGTTGGATCTCAGAGCTCCTCAAGTAA 1191 49.79 MIVGEQPKRTNPTVQIPPWTFLEDTGMDVYSHSSPGSGGSSGSVKCDGCSSGGGYSPYYLQEALAMLKRYLPSNEAEMDSDIDVSGKEMDSPVDAYSSDQFRMYEFKIKKCTRGRSHDWTECPFAHPGEKARRRDPRRYYYSGTACADFRKGSCVKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSTTSIPSYDGSPLRQAIEACAKQMPYLSSPGTSPPVSPRIESPPQSPIIKSLNRPHAPSSINEMIASLRNLQLNKELCKVQSPSSSSSWNVQVGSPVFGSPKDSTTRSGLPSLPETSTPPGIRYLDFWELGIGEEPAMERVESGRDLRAKMFEKLRKENSVGCGDQDKNSGGAGGLDVGWISELLK 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28697204 28698505 + MELO3C004610.2.1 Cme05g02028 329091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g02028 396 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 8 395 - -
Cme05g02028 396 MobiDBLite consensus disorder prediction 292 328 - -
Cme05g02028 396 MobiDBLite consensus disorder prediction 369 388 - -
Cme05g02028 396 Gene3D - 141 204 - -
Cme05g02028 396 ProSiteProfiles Zinc finger C3H1-type profile. 140 167 IPR000571 GO:0046872
Cme05g02028 396 MobiDBLite consensus disorder prediction 292 325 - -
Cme05g02028 396 SMART c3hfinal6 175 198 IPR000571 GO:0046872
Cme05g02028 396 SMART c3hfinal6 140 166 IPR000571 GO:0046872
Cme05g02028 396 PANTHER UNKEMPT FAMILY MEMBER 8 395 IPR045234 -
Cme05g02028 396 MobiDBLite consensus disorder prediction 238 266 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g02028 Cme-Chr5:28697204 Cme07g00245 Cme-Chr7:1573011 2.33E-108 dispersed
Cme05g02028 Cme-Chr5:28697204 Cme02g00207 Cme-Chr2:1614273 7.11E-154 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41388 None None None None Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g02028 - - csv:101221692 736.873