Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g02054 ATGACATCCGTAGCGGTTGCCGTTAACGGCGTCCGCGGCGGCAAAGGCGGCGGAGGAAGCCGCCGCGCTGTCAGATGGGCCGTCGAGAATCTCTTGCCGACCGCCGATCGTTTCGTATTGGTTCACGTTATGCCCAAAATCACCTCCATCCCCACCCCAATGGGGGATCTTGTAGCTGTCTCAGAACTTGATGCAGATGTGGTAGCTCTTTATGTTCATGATGTGAAACAGAAATATGAACAAGTTTTTGTCCCTTTTAAAAAGTTATGTAGAAGAGAAAAGTTTCTTCTTTTGGTAGAAACTTTGATTTTGGAGGATGATAATCCTGCCACTGCACTTTTGAGATATGCATCTGAATCTGGAATTAAATGTTTGGTTTTGGGTTCTTGTTTTAGAACTTGCATAGCGAGGAAGCTTAAAGGTGATTCAGTACCCTCTGCTATTATGAGAACTGCTTCTAGTTCTTTTGATATTTATGTTAAATATAAGAGAAGAGTTATCACAAGAAAGGCTAGTACTGCTCCATCTACTGAAACTGACTCGAGGCAGTGGATGCTTGGTGACACTGATTACTACATGGGTTCCAGTGCTGTTAGTGCAAAATCATTGGGAACTCTGTCTCTGTCTTCCTTGTCGATTTCTCATCAAAGGGGTGACAGCATCGGAGTTGACTCTACTGAGCAACTGAACTCTTTGCATACTCTTACTGAGGAGGAAGATATGCAGGCTGAAGTCGAATCTCTGCAGCTAGAACTAGAGACCACTGTTTCCTTGTACAAACAAGCTTGTGAAGAACTAGTACACACTCAGAAGAAGGTTCAGTCACTTACCTCAGAATACCTTGAAGAATCAAGAAAAGTGACTGCTGCTTTGGAAAGGGAAGAATCTTTGAGGAAAGCTGCTGCTAAGGAGAAAGCTAAGCACTTGGAAGCCATTAAAGAGCTTGAGGAGGCTAAAGACTTGCTGGCTAAAGAAGCTTATGAAAGGCAGTTAGCTGAGCTTAATGCCATAAAGGAGTCCGTGGAGAAGGAGAAAATTGTTGATACTCTTCTGACTAATGATAGGAGATACAGAAGATATACCACTGCTGAAATAGAGGCTGCAACAAATTTCTTCAATGAAGTTAATGTGATCGGCGAGGGAGGATATGGGAAAGTCTATAAATGCAGTCTTGATCATACCCCTGTAGCCATCAAGGTTATTCAACACGACATATACGAGAAAAAAGACGAGTTTCTAAAAGAGGTTGAAATTCTTAGCCAGATACGACATCCACACGTGGTTTTACTGCTTGGAGCTTGTCCCGAGCGAGGTTGCTTGATCTATGAATACATGGAAAATGGAAGCTTAGATGACCATATCTTTCTCCGGAATGGAAAAGCTCCCCTCCCTTGGTCTACTAGATTTAGAATAGTTTTTCAAGTAGCTTCTGGGCTTGCATTTTTACACAATTCAAAGCCAGAGCCTATTATTCATAGAGATCTTAAACCGGGCAATATCTTACTTGATAGAAACTTTGTAAGCAAAATCTCAGATGTTGGAATGGCTAAGATCATTGGTGATATCGTGCCAGACAATGTCACGGAGTACCGAAACACCGTTCTTGCTGGTACACTACATTACATGGATCCTGAATATCAGAGAACTGGCACACTTCGGCCAAAGTCGGATACTTACGCACTTGGAGTAACAATTCTGCAGTTGTTGACTGGGCGACAACCACACGGTCTTCTTCTCGCTATTGAAAATTCCATTGCAAGCGCTTCCCTTGCAGATATTCTAGACAAGTCAATTAGTGACTGGCCTCTAGCTAAAGCTGAAGAGCTAGCTCGGCTTGCATTGAAGTGCTTGAAACTTAGATGCAGGGATAGGCCAGATCTTGAATCTGAAGTTCTTCCAGTCCTTAAAAGACTTGTTGATTTTGCAGACACTTTTCAAAAGGAAGACAAAGGTTTTGGCAATCCCCCAAGCCACTACTTCTGCCCAATCCTCCAGGAAGTCATGGAGGATCCTTATATAGCAGCTGATGGCTTTACTTATGAGTATGTAGCCATTAAAGCATGGCTCGAGAAACACGATGTATCGCCGGTGACAAAGCTTAAGCTCCAGCATTCTTTTTTTATTCCAAACCACACTCTACGTTCCGCCATACGAGAGTGGAGTTACAGCGCAGTCTCAGGAATGTTTAGTATTGGTTTGTTCTGTGAACTACGTCCAATAATATACAAAGTTTATTTAGAAAATGAATTGAGAGTTCAATGGTATATTTTCACAGCTAAGCCGTCAACTGACTAA 2295 42.57 MTSVAVAVNGVRGGKGGGGSRRAVRWAVENLLPTADRFVLVHVMPKITSIPTPMGDLVAVSELDADVVALYVHDVKQKYEQVFVPFKKLCRREKFLLLVETLILEDDNPATALLRYASESGIKCLVLGSCFRTCIARKLKGDSVPSAIMRTASSSFDIYVKYKRRVITRKASTAPSTETDSRQWMLGDTDYYMGSSAVSAKSLGTLSLSSLSISHQRGDSIGVDSTEQLNSLHTLTEEEDMQAEVESLQLELETTVSLYKQACEELVHTQKKVQSLTSEYLEESRKVTAALEREESLRKAAAKEKAKHLEAIKELEEAKDLLAKEAYERQLAELNAIKESVEKEKIVDTLLTNDRRYRRYTTAEIEAATNFFNEVNVIGEGGYGKVYKCSLDHTPVAIKVIQHDIYEKKDEFLKEVEILSQIRHPHVVLLLGACPERGCLIYEYMENGSLDDHIFLRNGKAPLPWSTRFRIVFQVASGLAFLHNSKPEPIIHRDLKPGNILLDRNFVSKISDVGMAKIIGDIVPDNVTEYRNTVLAGTLHYMDPEYQRTGTLRPKSDTYALGVTILQLLTGRQPHGLLLAIENSIASASLADILDKSISDWPLAKAEELARLALKCLKLRCRDRPDLESEVLPVLKRLVDFADTFQKEDKGFGNPPSHYFCPILQEVMEDPYIAADGFTYEYVAIKAWLEKHDVSPVTKLKLQHSFFIPNHTLRSAIREWSYSAVSGMFSIGLFCELRPIIYKVYLENELRVQWYIFTAKPSTD 764
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28851775 28855519 + MELO3C004634.2.1 Cme05g02054 329117

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g02054 764 Gene3D Transferase(Phosphotransferase) domain 1 445 651 - -
Cme05g02054 764 ProSiteProfiles Protein kinase domain profile. 372 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g02054 764 Pfam U-box domain 656 721 IPR003613 GO:0004842|GO:0016567
Cme05g02054 764 SMART serkin_6 372 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g02054 764 ProSiteProfiles U-box domain profile. 654 727 IPR003613 GO:0004842|GO:0016567
Cme05g02054 764 PANTHER OS02G0152300 PROTEIN 220 723 - -
Cme05g02054 764 PANTHER OS02G0152300 PROTEIN 2 204 - -
Cme05g02054 764 ProSitePatterns Protein kinases ATP-binding region signature. 378 399 IPR017441 GO:0005524
Cme05g02054 764 ProSitePatterns Serine/Threonine protein kinases active-site signature. 490 502 IPR008271 GO:0004672|GO:0006468
Cme05g02054 764 Coils Coil 259 279 - -
Cme05g02054 764 SUPERFAMILY Protein kinase-like (PK-like) 355 628 IPR011009 -
Cme05g02054 764 Pfam Universal stress protein family 19 153 IPR006016 -
Cme05g02054 764 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 654 725 IPR013083 -
Cme05g02054 764 Gene3D Phosphorylase Kinase; domain 1 349 444 - -
Cme05g02054 764 Pfam Protein kinase domain 373 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g02054 764 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 17 151 - -
Cme05g02054 764 CDD RING-Ubox_WDSUB1_like 659 699 - -
Cme05g02054 764 SUPERFAMILY RING/U-box 646 721 - -
Cme05g02054 764 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 220 723 - -
Cme05g02054 764 CDD STK_N 3 160 - -
Cme05g02054 764 SMART Ubox_2 658 720 IPR003613 GO:0004842|GO:0016567
Cme05g02054 764 Gene3D HUPs 2 156 IPR014729 -
Cme05g02054 764 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 2 204 - -
Cme05g02054 764 Coils Coil 298 344 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g02054 - - - csv:101213999 1221.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01224 Cme-Chr5:19805120 Cme05g02054 Cme-Chr5:28851775 9.21E-08 dispersed
Cme05g02054 Cme-Chr5:28851775 Cme06g00175 Cme-Chr6:1068850 3.73E-104 dispersed
Cme09g01574 Cme-Chr9:20668953 Cme05g02054 Cme-Chr5:28851775 2.27E-14 dispersed
Cme11g02163 Cme-Chr11:29014598 Cme05g02054 Cme-Chr5:28851775 2.83E-75 dispersed
Cme05g02054 Cme-Chr5:28851775 Cme04g00320 Cme-Chr4:2501637 2.14E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g145 . Blo16g00977 Bda01g01340 Bda11g01037 . . . . . . Cma05g01403 Cma12g00651 Car05g01319 Car12g00600 . . . . . . . . . . Cla11g00152 . . . . . . . . . . . Csa02g00037 Chy05g01451 . . . . . . Bpe13g01247 . Bma06g00882 . Cmo05g01403 Cmo12g00590 . . . . Cpe11g01178 . Bhi06g01630 . . . . . . . . . . . . . Lsi11g00178 . . Cme05g02054
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme04g02015 . 1 1043 U-box Gene Family AT5G15400 76.0 0.0e+00 1575.1
Cme03g02175 . 1 637 U-box Gene Family AT1G24330 65.9 2.1e-232 802.4
Cme10g00643 . 1 758 U-box Gene Family AT1G24330 58.6 3.9e-231 798.1
Cme03g02175 . 1 642 U-box Gene Family AT1G67530 66.0 4.7e-232 801.2
Cme10g00643 . 1 758 U-box Gene Family AT1G67530 57.3 2.1e-224 775.8
Cme08g00355 . 1 362 U-box Gene Family AT4G21350 62.6 2.1e-121 432.6
Cme04g01429 . 135 461 U-box Gene Family AT3G07360 54.5 1.7e-79 293.1
Cme10g01508 . 326 513 U-box Gene Family AT1G71020 72.0 5.5e-74 275.4
Cme09g01399 . 251 451 U-box Gene Family AT1G71020 53.5 8.3e-54 208.4
Cme12g00199 CCT 98 267 U-box Gene Family AT1G71020 58.4 2.8e-49 193.4
Cme10g00093 . 210 413 U-box Gene Family AT1G71020 51.7 1.5e-47 187.6
Cme11g01284 CCT 255 424 U-box Gene Family AT1G71020 55.9 2.9e-46 183.3
Cme10g01508 . 72 717 U-box Gene Family AT1G23030 55.8 1.1e-106 384.4
Cme12g00199 CCT 98 467 U-box Gene Family AT1G23030 61.2 4.8e-46 183.0
Cme11g01284 CCT 93 634 U-box Gene Family AT2G28830 51.1 2.7e-99 359.8
Cme12g00199 CCT 5 479 U-box Gene Family AT2G28830 60.0 3.6e-83 306.2
Cme11g01284 CCT 3 648 U-box Gene Family AT3G46510 65.5 2.9e-158 555.8
Cme10g00093 . 5 620 U-box Gene Family AT3G46510 58.7 6.1e-124 441.8
Cme12g00199 CCT 2 482 U-box Gene Family AT3G46510 70.9 2.1e-111 400.2
Cme10g00093 . 9 619 U-box Gene Family AT3G54850 69.1 9.6e-167 583.9
Cme11g01284 CCT 13 627 U-box Gene Family AT3G54850 57.6 9.1e-117 417.9
Cme12g00199 CCT 12 471 U-box Gene Family AT3G54850 63.1 1.3e-78 291.2
Cme11g01052 . 92 622 U-box Gene Family AT5G42340 64.9 7.0e-120 428.3
Cme08g02117 . 9 671 U-box Gene Family AT5G01830 57.7 1.0e-195 680.2
Cme12g01264 . 1 714 U-box Gene Family AT1G29340 67.4 5.9e-245 844.0
Cme06g01534 . 27 442 U-box Gene Family AT5G37490 51.6 1.4e-111 400.2
Cme08g02024 . 8 425 U-box Gene Family AT3G52450 50.3 7.7e-115 411.0
Cme04g02322 . 1 404 U-box Gene Family AT2G35930 54.1 2.2e-119 426.0
Cme05g00240 CCT,ECH 13 412 U-box Gene Family AT2G35930 52.1 3.3e-115 412.1
Cme06g01339 . 9 424 U-box Gene Family AT3G19380 64.2 7.4e-147 517.3
Cme06g01339 . 1 424 U-box Gene Family AT1G49780 64.1 2.9e-151 531.9
Cme08g01071 CCT 1 407 U-box Gene Family AT5G64660 54.9 5.3e-121 431.4
Cme08g01071 CCT 1 407 U-box Gene Family AT5G09800 51.8 6.1e-106 381.3
Cme07g00269 . 1 453 U-box Gene Family AT3G49810 63.2 3.0e-154 542.0
Cme03g02117 . 1 395 U-box Gene Family AT3G49810 65.6 2.0e-142 502.7
Cme07g00269 . 1 453 U-box Gene Family AT5G65920 62.3 1.1e-148 523.5
Cme03g02117 . 1 395 U-box Gene Family AT5G65920 66.3 4.0e-143 505.0
Cme05g02054 . 4 720 U-box Gene Family AT2G19410 50.6 1.5e-209 726.5
Cme03g01705 . 358 701 U-box Gene Family AT2G19410 53.2 1.0e-96 351.7
Cme03g01705 . 392 698 U-box Gene Family AT4G25160 52.8 9.3e-85 312.0
Cme09g00333 . 39 553 U-box Gene Family AT5G40140 55.1 6.8e-92 335.1
Cme02g01939 . 71 581 U-box Gene Family AT5G40140 51.0 4.4e-67 252.7
Cme03g01335 . 4 815 U-box Gene Family AT1G76390 60.6 7.2e-268 920.2
Cme03g01335 . 13 815 U-box Gene Family AT1G20780 61.2 2.5e-276 948.3
Cme10g00643 . 1 767 U-box Gene Family AT1G27910 63.2 3.9e-263 904.4
Cme03g02175 . 1 696 U-box Gene Family AT1G27910 63.8 5.5e-249 857.4
Cme08g00648 . 1 592 U-box Gene Family AT5G67530 74.2 2.4e-260 894.8
Cme06g00245 . 3 157 U-box Gene Family AT5G67530 52.9 3.9e-45 179.9
Cme06g00455 . 36 552 U-box Gene Family AT1G04510 74.1 1.6e-220 762.3
Cme06g00455 . 36 521 U-box Gene Family AT2G33340 73.2 1.1e-207 719.5
Cme04g02015 . 1 1043 U-box Gene Family AT5G15400 76.0 0.0e+00 1575.1
Cme03g02175 . 1 637 U-box Gene Family AT1G24330 65.9 2.1e-232 802.4
Cme10g00643 . 1 758 U-box Gene Family AT1G24330 58.6 3.9e-231 798.1
Cme03g02175 . 1 642 U-box Gene Family AT1G67530 66.0 4.7e-232 801.2
Cme10g00643 . 1 758 U-box Gene Family AT1G67530 57.3 2.1e-224 775.8
Cme08g00355 . 1 362 U-box Gene Family AT4G21350 62.6 2.1e-121 432.6
Cme04g01429 . 135 461 U-box Gene Family AT3G07360 54.5 1.7e-79 293.1
Cme10g01508 . 326 513 U-box Gene Family AT1G71020 72.0 5.5e-74 275.4
Cme09g01399 . 251 451 U-box Gene Family AT1G71020 53.5 8.3e-54 208.4
Cme12g00199 CCT 98 267 U-box Gene Family AT1G71020 58.4 2.8e-49 193.4
Cme10g00093 . 210 413 U-box Gene Family AT1G71020 51.7 1.5e-47 187.6
Cme11g01284 CCT 255 424 U-box Gene Family AT1G71020 55.9 2.9e-46 183.3
Cme10g01508 . 72 717 U-box Gene Family AT1G23030 55.8 1.1e-106 384.4
Cme12g00199 CCT 98 467 U-box Gene Family AT1G23030 61.2 4.8e-46 183.0
Cme11g01284 CCT 93 634 U-box Gene Family AT2G28830 51.1 2.7e-99 359.8
Cme12g00199 CCT 5 479 U-box Gene Family AT2G28830 60.0 3.6e-83 306.2
Cme11g01284 CCT 3 648 U-box Gene Family AT3G46510 65.5 2.9e-158 555.8
Cme10g00093 . 5 620 U-box Gene Family AT3G46510 58.7 6.1e-124 441.8
Cme12g00199 CCT 2 482 U-box Gene Family AT3G46510 70.9 2.1e-111 400.2
Cme10g00093 . 9 619 U-box Gene Family AT3G54850 69.1 9.6e-167 583.9
Cme11g01284 CCT 13 627 U-box Gene Family AT3G54850 57.6 9.1e-117 417.9
Cme12g00199 CCT 12 471 U-box Gene Family AT3G54850 63.1 1.3e-78 291.2
Cme11g01052 . 92 622 U-box Gene Family AT5G42340 64.9 7.0e-120 428.3
Cme08g02117 . 9 671 U-box Gene Family AT5G01830 57.7 1.0e-195 680.2
Cme12g01264 . 1 714 U-box Gene Family AT1G29340 67.4 5.9e-245 844.0
Cme06g01534 . 27 442 U-box Gene Family AT5G37490 51.6 1.4e-111 400.2
Cme08g02024 . 8 425 U-box Gene Family AT3G52450 50.3 7.7e-115 411.0
Cme04g02322 . 1 404 U-box Gene Family AT2G35930 54.1 2.2e-119 426.0
Cme05g00240 CCT,ECH 13 412 U-box Gene Family AT2G35930 52.1 3.3e-115 412.1
Cme06g01339 . 9 424 U-box Gene Family AT3G19380 64.2 7.4e-147 517.3
Cme06g01339 . 1 424 U-box Gene Family AT1G49780 64.1 2.9e-151 531.9
Cme08g01071 CCT 1 407 U-box Gene Family AT5G64660 54.9 5.3e-121 431.4
Cme08g01071 CCT 1 407 U-box Gene Family AT5G09800 51.8 6.1e-106 381.3
Cme07g00269 . 1 453 U-box Gene Family AT3G49810 63.2 3.0e-154 542.0
Cme03g02117 . 1 395 U-box Gene Family AT3G49810 65.6 2.0e-142 502.7
Cme07g00269 . 1 453 U-box Gene Family AT5G65920 62.3 1.1e-148 523.5
Cme03g02117 . 1 395 U-box Gene Family AT5G65920 66.3 4.0e-143 505.0
Cme05g02054 . 4 720 U-box Gene Family AT2G19410 50.6 1.5e-209 726.5
Cme03g01705 . 358 701 U-box Gene Family AT2G19410 53.2 1.0e-96 351.7
Cme03g01705 . 392 698 U-box Gene Family AT4G25160 52.8 9.3e-85 312.0
Cme09g00333 . 39 553 U-box Gene Family AT5G40140 55.1 6.8e-92 335.1
Cme02g01939 . 71 581 U-box Gene Family AT5G40140 51.0 4.4e-67 252.7
Cme03g01335 . 4 815 U-box Gene Family AT1G76390 60.6 7.2e-268 920.2
Cme03g01335 . 13 815 U-box Gene Family AT1G20780 61.2 2.5e-276 948.3
Cme10g00643 . 1 767 U-box Gene Family AT1G27910 63.2 3.9e-263 904.4
Cme03g02175 . 1 696 U-box Gene Family AT1G27910 63.8 5.5e-249 857.4
Cme08g00648 . 1 592 U-box Gene Family AT5G67530 74.2 2.4e-260 894.8
Cme06g00245 . 3 157 U-box Gene Family AT5G67530 52.9 3.9e-45 179.9
Cme06g00455 . 36 552 U-box Gene Family AT1G04510 74.1 1.6e-220 762.3
Cme06g00455 . 36 521 U-box Gene Family AT2G33340 73.2 1.1e-207 719.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008876 1 1 1 2 1 0 2 1 1 1 1 0 1 1 1 1 0 0 1 0 1 1 0 1 1 1 1 1 2 1 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64916 PF00069 Pkinase 9.30E-43 CL0016 Cme PK