Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g02054 ATGACATCCGTAGCGGTTGCCGTTAACGGCGTCCGCGGCGGCAAAGGCGGCGGAGGAAGCCGCCGCGCTGTCAGATGGGCCGTCGAGAATCTCTTGCCGACCGCCGATCGTTTCGTATTGGTTCACGTTATGCCCAAAATCACCTCCATCCCCACCCCAATGGGGGATCTTGTAGCTGTCTCAGAACTTGATGCAGATGTGGTAGCTCTTTATGTTCATGATGTGAAACAGAAATATGAACAAGTTTTTGTCCCTTTTAAAAAGTTATGTAGAAGAGAAAAGTTTCTTCTTTTGGTAGAAACTTTGATTTTGGAGGATGATAATCCTGCCACTGCACTTTTGAGATATGCATCTGAATCTGGAATTAAATGTTTGGTTTTGGGTTCTTGTTTTAGAACTTGCATAGCGAGGAAGCTTAAAGGTGATTCAGTACCCTCTGCTATTATGAGAACTGCTTCTAGTTCTTTTGATATTTATGTTAAATATAAGAGAAGAGTTATCACAAGAAAGGCTAGTACTGCTCCATCTACTGAAACTGACTCGAGGCAGTGGATGCTTGGTGACACTGATTACTACATGGGTTCCAGTGCTGTTAGTGCAAAATCATTGGGAACTCTGTCTCTGTCTTCCTTGTCGATTTCTCATCAAAGGGGTGACAGCATCGGAGTTGACTCTACTGAGCAACTGAACTCTTTGCATACTCTTACTGAGGAGGAAGATATGCAGGCTGAAGTCGAATCTCTGCAGCTAGAACTAGAGACCACTGTTTCCTTGTACAAACAAGCTTGTGAAGAACTAGTACACACTCAGAAGAAGGTTCAGTCACTTACCTCAGAATACCTTGAAGAATCAAGAAAAGTGACTGCTGCTTTGGAAAGGGAAGAATCTTTGAGGAAAGCTGCTGCTAAGGAGAAAGCTAAGCACTTGGAAGCCATTAAAGAGCTTGAGGAGGCTAAAGACTTGCTGGCTAAAGAAGCTTATGAAAGGCAGTTAGCTGAGCTTAATGCCATAAAGGAGTCCGTGGAGAAGGAGAAAATTGTTGATACTCTTCTGACTAATGATAGGAGATACAGAAGATATACCACTGCTGAAATAGAGGCTGCAACAAATTTCTTCAATGAAGTTAATGTGATCGGCGAGGGAGGATATGGGAAAGTCTATAAATGCAGTCTTGATCATACCCCTGTAGCCATCAAGGTTATTCAACACGACATATACGAGAAAAAAGACGAGTTTCTAAAAGAGGTTGAAATTCTTAGCCAGATACGACATCCACACGTGGTTTTACTGCTTGGAGCTTGTCCCGAGCGAGGTTGCTTGATCTATGAATACATGGAAAATGGAAGCTTAGATGACCATATCTTTCTCCGGAATGGAAAAGCTCCCCTCCCTTGGTCTACTAGATTTAGAATAGTTTTTCAAGTAGCTTCTGGGCTTGCATTTTTACACAATTCAAAGCCAGAGCCTATTATTCATAGAGATCTTAAACCGGGCAATATCTTACTTGATAGAAACTTTGTAAGCAAAATCTCAGATGTTGGAATGGCTAAGATCATTGGTGATATCGTGCCAGACAATGTCACGGAGTACCGAAACACCGTTCTTGCTGGTACACTACATTACATGGATCCTGAATATCAGAGAACTGGCACACTTCGGCCAAAGTCGGATACTTACGCACTTGGAGTAACAATTCTGCAGTTGTTGACTGGGCGACAACCACACGGTCTTCTTCTCGCTATTGAAAATTCCATTGCAAGCGCTTCCCTTGCAGATATTCTAGACAAGTCAATTAGTGACTGGCCTCTAGCTAAAGCTGAAGAGCTAGCTCGGCTTGCATTGAAGTGCTTGAAACTTAGATGCAGGGATAGGCCAGATCTTGAATCTGAAGTTCTTCCAGTCCTTAAAAGACTTGTTGATTTTGCAGACACTTTTCAAAAGGAAGACAAAGGTTTTGGCAATCCCCCAAGCCACTACTTCTGCCCAATCCTCCAGGAAGTCATGGAGGATCCTTATATAGCAGCTGATGGCTTTACTTATGAGTATGTAGCCATTAAAGCATGGCTCGAGAAACACGATGTATCGCCGGTGACAAAGCTTAAGCTCCAGCATTCTTTTTTTATTCCAAACCACACTCTACGTTCCGCCATACGAGAGTGGAGTTACAGCGCAGTCTCAGGAATGTTTAGTATTGGTTTGTTCTGTGAACTACGTCCAATAATATACAAAGTTTATTTAGAAAATGAATTGAGAGTTCAATGGTATATTTTCACAGCTAAGCCGTCAACTGACTAA 2295 42.57 MTSVAVAVNGVRGGKGGGGSRRAVRWAVENLLPTADRFVLVHVMPKITSIPTPMGDLVAVSELDADVVALYVHDVKQKYEQVFVPFKKLCRREKFLLLVETLILEDDNPATALLRYASESGIKCLVLGSCFRTCIARKLKGDSVPSAIMRTASSSFDIYVKYKRRVITRKASTAPSTETDSRQWMLGDTDYYMGSSAVSAKSLGTLSLSSLSISHQRGDSIGVDSTEQLNSLHTLTEEEDMQAEVESLQLELETTVSLYKQACEELVHTQKKVQSLTSEYLEESRKVTAALEREESLRKAAAKEKAKHLEAIKELEEAKDLLAKEAYERQLAELNAIKESVEKEKIVDTLLTNDRRYRRYTTAEIEAATNFFNEVNVIGEGGYGKVYKCSLDHTPVAIKVIQHDIYEKKDEFLKEVEILSQIRHPHVVLLLGACPERGCLIYEYMENGSLDDHIFLRNGKAPLPWSTRFRIVFQVASGLAFLHNSKPEPIIHRDLKPGNILLDRNFVSKISDVGMAKIIGDIVPDNVTEYRNTVLAGTLHYMDPEYQRTGTLRPKSDTYALGVTILQLLTGRQPHGLLLAIENSIASASLADILDKSISDWPLAKAEELARLALKCLKLRCRDRPDLESEVLPVLKRLVDFADTFQKEDKGFGNPPSHYFCPILQEVMEDPYIAADGFTYEYVAIKAWLEKHDVSPVTKLKLQHSFFIPNHTLRSAIREWSYSAVSGMFSIGLFCELRPIIYKVYLENELRVQWYIFTAKPSTD 764
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28851775 28855519 + MELO3C004634.2.1 Cme05g02054 329117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g02054 764 Gene3D Transferase(Phosphotransferase) domain 1 445 651 - -
Cme05g02054 764 ProSiteProfiles Protein kinase domain profile. 372 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g02054 764 Pfam U-box domain 656 721 IPR003613 GO:0004842|GO:0016567
Cme05g02054 764 SMART serkin_6 372 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g02054 764 ProSiteProfiles U-box domain profile. 654 727 IPR003613 GO:0004842|GO:0016567
Cme05g02054 764 PANTHER OS02G0152300 PROTEIN 220 723 - -
Cme05g02054 764 PANTHER OS02G0152300 PROTEIN 2 204 - -
Cme05g02054 764 ProSitePatterns Protein kinases ATP-binding region signature. 378 399 IPR017441 GO:0005524
Cme05g02054 764 ProSitePatterns Serine/Threonine protein kinases active-site signature. 490 502 IPR008271 GO:0004672|GO:0006468
Cme05g02054 764 Coils Coil 259 279 - -
Cme05g02054 764 SUPERFAMILY Protein kinase-like (PK-like) 355 628 IPR011009 -
Cme05g02054 764 Pfam Universal stress protein family 19 153 IPR006016 -
Cme05g02054 764 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 654 725 IPR013083 -
Cme05g02054 764 Gene3D Phosphorylase Kinase; domain 1 349 444 - -
Cme05g02054 764 Pfam Protein kinase domain 373 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g02054 764 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 17 151 - -
Cme05g02054 764 CDD RING-Ubox_WDSUB1_like 659 699 - -
Cme05g02054 764 SUPERFAMILY RING/U-box 646 721 - -
Cme05g02054 764 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 220 723 - -
Cme05g02054 764 CDD STK_N 3 160 - -
Cme05g02054 764 SMART Ubox_2 658 720 IPR003613 GO:0004842|GO:0016567
Cme05g02054 764 Gene3D HUPs 2 156 IPR014729 -
Cme05g02054 764 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 2 204 - -
Cme05g02054 764 Coils Coil 298 344 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01224 Cme-Chr5:19805120 Cme05g02054 Cme-Chr5:28851775 9.21E-08 dispersed
Cme05g02054 Cme-Chr5:28851775 Cme06g00175 Cme-Chr6:1068850 3.73E-104 dispersed
Cme09g01574 Cme-Chr9:20668953 Cme05g02054 Cme-Chr5:28851775 2.27E-14 dispersed
Cme11g02163 Cme-Chr11:29014598 Cme05g02054 Cme-Chr5:28851775 2.83E-75 dispersed
Cme05g02054 Cme-Chr5:28851775 Cme04g00320 Cme-Chr4:2501637 2.14E-09 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64916 PF00069 Pkinase 9.30E-43 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g02054 - - csv:101213999 1221.07