Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g02055 ATGTTGTTGATCGATCAGCCTCCACCAATAAAGCCCTCAGACAACCATTTGTCTTTAGCAGATTTAGACTCGATAAAAGTCATTGGAAAAGGAAATGGTGGAATTGTTCAATTAGTCCGACATAAATGGACCAACCAGTTTTTTGCTCTAAAGGTGATTCAGATGAATGCCGAGGAATCTTATTGTAGGCTGGTTGCCAAGGAACTAAAAATTAATCAGTTGGCACAAAACCCTTACATCGTTGTTTGTTATCAAATCTTCTATGACAATGGTGCCATTTTCATAATCTTGGAATACATGGATGGTGGATCGCTTGCAGATCTTCTGAAAAATGTTGAAACAGTCCTAGAGCCGTATCTTGCAGCCATTTGTTACCAGGTACTAAACGGGTTAATATACCTTCACCACGAAAAACATGTCATCCACAGAGACCTTAAGCCTTCAAATTTATTGATAAATCATAGAGGGGAAGTTAAGATTACTGACTTTGGTGTAAGCGCTATACTAGCAAATACGGCCGATCAAGCAAATTCTTTTGTCGGCACATATGCTTACATGTCTCCGGAGAGACTCAATGGGGACAAATACGACAACAAAAGTGACATATGGAGTTTGGGTTTGATTTTGCTCGAATGTGCGACAGGTCAATTTCCATATTCTCCACCAGATAAGGATAAAGGATGGGAAGGCTTTTTTGATGTTATGGTGGCCGTAGTAGAACTAGCATCGCCTTCTGCGCCCGAACAATTTTCTCCAGAGTTCTGCTCTTTCATTTCTTCATGCTTACAGAAAGACCCACAAAAAAGAAGCTCTGCACGTGAACTTCTGGTGCATCCTTTCATCAAAAAGTTCGAGAACTTCGATGTAGATCTTGCAGCTTACTTCAAAGATGCTGGTTCTCCATTGGCAACCTTCTAA 918 40.52 MLLIDQPPPIKPSDNHLSLADLDSIKVIGKGNGGIVQLVRHKWTNQFFALKVIQMNAEESYCRLVAKELKINQLAQNPYIVVCYQIFYDNGAIFIILEYMDGGSLADLLKNVETVLEPYLAAICYQVLNGLIYLHHEKHVIHRDLKPSNLLINHRGEVKITDFGVSAILANTADQANSFVGTYAYMSPERLNGDKYDNKSDIWSLGLILLECATGQFPYSPPDKDKGWEGFFDVMVAVVELASPSAPEQFSPEFCSFISSCLQKDPQKRSSARELLVHPFIKKFENFDVDLAAYFKDAGSPLATF 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28855837 28858046 - MELO3C004635.2.1 Cme05g02055 329118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g02055 305 PANTHER MAP KINASE KINASE 5 304 - -
Cme05g02055 305 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Cme05g02055 305 SMART serkin_6 22 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g02055 305 Gene3D Phosphorylase Kinase; domain 1 8 101 - -
Cme05g02055 305 CDD PKc_MAPKK_plant_like 20 286 - -
Cme05g02055 305 Pfam Protein kinase domain 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g02055 305 ProSiteProfiles Protein kinase domain profile. 22 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g02055 305 Gene3D Transferase(Phosphotransferase) domain 1 102 300 - -
Cme05g02055 305 SUPERFAMILY Protein kinase-like (PK-like) 10 287 IPR011009 -
Cme05g02055 305 PIRSF ILK 6 284 - -
Cme05g02055 305 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 5 304 - -
Cme05g02055 305 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme02g00272 Cme05g02055 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g02012 Cme-Chr5:28599809 Cme05g02055 Cme-Chr5:28855837 3.75E-137 dispersed
Cme05g02055 Cme-Chr5:28855837 Cme07g00580 Cme-Chr7:4976665 1.68E-44 dispersed
Cme01g02048 Cme-Chr1:29261546 Cme05g02055 Cme-Chr5:28855837 3.76E-34 transposed
Cme04g01310 Cme-Chr4:18460759 Cme05g02055 Cme-Chr5:28855837 7.56E-65 transposed
Cme04g01845 Cme-Chr4:26201523 Cme05g02055 Cme-Chr5:28855837 7.23E-74 transposed
Cme05g01769 Cme-Chr5:26710454 Cme05g02055 Cme-Chr5:28855837 2.30E-33 transposed
Cme08g01679 Cme-Chr8:18573284 Cme05g02055 Cme-Chr5:28855837 8.85E-34 transposed
Cme12g01812 Cme-Chr12:24587517 Cme05g02055 Cme-Chr5:28855837 2.83E-78 transposed
Cme02g00272 Cme-Chr2:2283734 Cme05g02055 Cme-Chr5:28855837 7.13E-161 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64917 PF00069 Pkinase 8.30E-70 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g02055 K20603 - csv:101206374 600.512