Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g02069 ATGAGCGCAAGAAACAGGTTTCCGTTCACAGCAGCTCAGTGGCAAGAGCTTGAGCACCAAGCTCTGATCTTCAAGTACATGGTCTCCGGCGTCCCTATCCCTCCCGAACTGCTTTACAGCATTAAGGCAACCTCTTTGGACACTCCTTTCATTTCCAGGCTCTTTCCTCACCAATATCCACAAGTTTCAGCAGTTGGATGGAACTACTTGCAGATGGGTTCTGGGAGGAAAATTGATCCTGAGCCTGGAAGGTGCAGAAGAACAGACGGTAAGAAATGGAGATGCTCCAAAGAGGCATACCCAGATTCTAAATACTGTGAGAGACATATGCACAGAGGTAAAAACCGTTCAAGAAAGCCTGTGGAACAAGTTTCGAAAACAACTCCTCTAAACTCTTCTAATCCATCCACCCCAGCCATCTCATCCATCACCCACAACTCTGAAACTCATCCCCATCCCCACCCTTTTCACTATCAAAGTCCCTCTGCTGCTTCTTCTTATCCATCCTTACTTCCGGATTACAGGTATGTTTATGGGGAGAAGGAAGAAGATTTCTTTGTAAGGGAACAACATTCTGGAAACGTAAGAGGTTTCACTGGTTCGTCTATGGATGATTCGTGGCAGCTAACTCCTCTGACAATGAGTTGCTCTTCCTCATCCTCCAGATACAAGAACTGCTCTGCTTTACAAGGTGATTACTCTTCTTACTTACAGCTGCAGAGCTTTGGAAAATATAATGAGATGCAGAGTAAGATGGACAGAGATCAGGAACCACAGAAGACAGTGCATCATTTTTTTGATGAATGGTCTCCTAAACATAGAGAGTCTTGGGATGATTTGGATGATAAGTCATCTAATACTGGCTCAGTTTCGGCAACTCGGCTTTCAATGTCTATTCCTAACACAGACTCCTTCATCTTCAGTTCCAATAAGCGGCCCCTAATGGACCGCGTTGCTTCGTGGTTTCCTGCTGCCTCAGAGTCTCACCCCTTTCTTTACAGTTCACACATCACGGCTGTAAAAGCCCAGAGCGGTTTTCACCGTTTTCCTTTGCCCAGGGTTTTGCATTGGCAACCCAATGCCGGCAGCACTGTTAACAGTCAGATACTCAACGAGGTTTCGCAATGTGTTGAGAGTATCCATGGCGTTAAAGGGGGCAAGTGGAAAGCTACTCTCACTTTCTACAAACCCATCTTGCGAGACCAGAACTCGCCGGCGGCCGAATTCCCCCGCGACTTTCTCGGAATTTCGCTGCCGGAGCAGCCAAACAAGTATTACCTTATAATTCGTGGCCAACGGATCGTCTTGGAAGCTGATTTTACGATTCAGGCTATAATGGAGAAGCTGCAGTCGTACAAATTGCGCGTTGCTCTCAATTTCGAGTATCAGTTAGGGGATTTCCAACTGAGAGTGGGAAAAGTTGTTCCCAACAATTCCGAGAATTTGAGAGGAATAGTTATGGAGATCGAGTATCTCCCAATTTCTTCAATGGAGAAATCAAGACAGATAATGGATGAGTTCTTCGATGTATGGCAAGAAGCCATGTCAAAAAGTTCATTACCAGGTCGTTTCATGCACATAGAATCAAACTTTGCAGAATATGGACTATCGGATTTCTATACTCCTCAACACACAGCAGTTCAATATGGCAACGTCATGGCTCAACTAATCGCTACTGTGCAAGCAGTTCAATCCGCTAGAAATTAG 1707 45.34 MSARNRFPFTAAQWQELEHQALIFKYMVSGVPIPPELLYSIKATSLDTPFISRLFPHQYPQVSAVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEQVSKTTPLNSSNPSTPAISSITHNSETHPHPHPFHYQSPSAASSYPSLLPDYRYVYGEKEEDFFVREQHSGNVRGFTGSSMDDSWQLTPLTMSCSSSSSRYKNCSALQGDYSSYLQLQSFGKYNEMQSKMDRDQEPQKTVHHFFDEWSPKHRESWDDLDDKSSNTGSVSATRLSMSIPNTDSFIFSSNKRPLMDRVASWFPAASESHPFLYSSHITAVKAQSGFHRFPLPRVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNSPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQIMDEFFDVWQEAMSKSSLPGRFMHIESNFAEYGLSDFYTPQHTAVQYGNVMAQLIATVQAVQSARN 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28919573 28925554 - MELO3C004649.2.1 Cme05g02069 329132

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g02069 568 MobiDBLite consensus disorder prediction 122 149 - -
Cme05g02069 568 Pfam QLQ 8 41 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cme05g02069 568 PANTHER UBIQUITIN SPECIFIC PROTEASE HOMOLOG 49 354 562 IPR013921 GO:0003712|GO:0006357|GO:0016592
Cme05g02069 568 Pfam WRC 80 122 IPR014977 -
Cme05g02069 568 ProSiteProfiles WRC domain profile. 79 123 IPR014977 -
Cme05g02069 568 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 20 354 562 - -
Cme05g02069 568 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cme05g02069 568 SMART QLQ_2 7 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cme05g02069 568 Pfam TATA-binding related factor (TRF) of subunit 20 of Mediator complex 354 553 IPR013921 GO:0003712|GO:0006357|GO:0016592
Cme05g02069 568 MobiDBLite consensus disorder prediction 106 162 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g02069 K13528 MED20; mediator of RNA polymerase II transcription subunit 20 - csv:101214722 592.423
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01295 Cme-Chr4:18167269 Cme05g02069 Cme-Chr5:28919573 5.48E-60 dispersed
Cme05g02069 Cme-Chr5:28919573 Cme08g00671 Cme-Chr8:4390038 1.28E-36 dispersed
Cme05g01610 Cme-Chr5:25229454 Cme05g02069 Cme-Chr5:28919573 9.87E-06 transposed
Cme11g00639 Cme-Chr11:7385987 Cme05g02069 Cme-Chr5:28919573 3.24E-06 transposed
Cme02g00291 Cme-Chr2:2416702 Cme05g02069 Cme-Chr5:28919573 1.36E-106 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g92 . . . . Bpe01g00611 . . Bma11g00606 . . Cma05g01419 . Car05g01336 . . . . . . . . . . . Cla11g00137 Cam11g0159 Cec11g0160 Cco11g0171 Clacu11g0294 Cmu11g0147 Cre11g0645 . . . . . Csa02g00020 Chy05g01468 . . . Bda02g00372 . . . . . . Cmo05g01416 . . . . . Cpe11g01193 . . . . . . . . . . . . . . . Lsi11g00161 . . Cme05g02069
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme05g02069 . 6 113 GRF Transcription Factor Family AT3G13960 73.1 5.5e-43 172.2
Cme02g00291 . 8 110 GRF Transcription Factor Family AT3G13960 73.8 2.7e-42 169.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009767 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 2 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41391 PF08612 Med20 5.50E-37 CL0273 Cme TF