Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g02069 ATGAGCGCAAGAAACAGGTTTCCGTTCACAGCAGCTCAGTGGCAAGAGCTTGAGCACCAAGCTCTGATCTTCAAGTACATGGTCTCCGGCGTCCCTATCCCTCCCGAACTGCTTTACAGCATTAAGGCAACCTCTTTGGACACTCCTTTCATTTCCAGGCTCTTTCCTCACCAATATCCACAAGTTTCAGCAGTTGGATGGAACTACTTGCAGATGGGTTCTGGGAGGAAAATTGATCCTGAGCCTGGAAGGTGCAGAAGAACAGACGGTAAGAAATGGAGATGCTCCAAAGAGGCATACCCAGATTCTAAATACTGTGAGAGACATATGCACAGAGGTAAAAACCGTTCAAGAAAGCCTGTGGAACAAGTTTCGAAAACAACTCCTCTAAACTCTTCTAATCCATCCACCCCAGCCATCTCATCCATCACCCACAACTCTGAAACTCATCCCCATCCCCACCCTTTTCACTATCAAAGTCCCTCTGCTGCTTCTTCTTATCCATCCTTACTTCCGGATTACAGGTATGTTTATGGGGAGAAGGAAGAAGATTTCTTTGTAAGGGAACAACATTCTGGAAACGTAAGAGGTTTCACTGGTTCGTCTATGGATGATTCGTGGCAGCTAACTCCTCTGACAATGAGTTGCTCTTCCTCATCCTCCAGATACAAGAACTGCTCTGCTTTACAAGGTGATTACTCTTCTTACTTACAGCTGCAGAGCTTTGGAAAATATAATGAGATGCAGAGTAAGATGGACAGAGATCAGGAACCACAGAAGACAGTGCATCATTTTTTTGATGAATGGTCTCCTAAACATAGAGAGTCTTGGGATGATTTGGATGATAAGTCATCTAATACTGGCTCAGTTTCGGCAACTCGGCTTTCAATGTCTATTCCTAACACAGACTCCTTCATCTTCAGTTCCAATAAGCGGCCCCTAATGGACCGCGTTGCTTCGTGGTTTCCTGCTGCCTCAGAGTCTCACCCCTTTCTTTACAGTTCACACATCACGGCTGTAAAAGCCCAGAGCGGTTTTCACCGTTTTCCTTTGCCCAGGGTTTTGCATTGGCAACCCAATGCCGGCAGCACTGTTAACAGTCAGATACTCAACGAGGTTTCGCAATGTGTTGAGAGTATCCATGGCGTTAAAGGGGGCAAGTGGAAAGCTACTCTCACTTTCTACAAACCCATCTTGCGAGACCAGAACTCGCCGGCGGCCGAATTCCCCCGCGACTTTCTCGGAATTTCGCTGCCGGAGCAGCCAAACAAGTATTACCTTATAATTCGTGGCCAACGGATCGTCTTGGAAGCTGATTTTACGATTCAGGCTATAATGGAGAAGCTGCAGTCGTACAAATTGCGCGTTGCTCTCAATTTCGAGTATCAGTTAGGGGATTTCCAACTGAGAGTGGGAAAAGTTGTTCCCAACAATTCCGAGAATTTGAGAGGAATAGTTATGGAGATCGAGTATCTCCCAATTTCTTCAATGGAGAAATCAAGACAGATAATGGATGAGTTCTTCGATGTATGGCAAGAAGCCATGTCAAAAAGTTCATTACCAGGTCGTTTCATGCACATAGAATCAAACTTTGCAGAATATGGACTATCGGATTTCTATACTCCTCAACACACAGCAGTTCAATATGGCAACGTCATGGCTCAACTAATCGCTACTGTGCAAGCAGTTCAATCCGCTAGAAATTAG 1707 45.34 MSARNRFPFTAAQWQELEHQALIFKYMVSGVPIPPELLYSIKATSLDTPFISRLFPHQYPQVSAVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEQVSKTTPLNSSNPSTPAISSITHNSETHPHPHPFHYQSPSAASSYPSLLPDYRYVYGEKEEDFFVREQHSGNVRGFTGSSMDDSWQLTPLTMSCSSSSSRYKNCSALQGDYSSYLQLQSFGKYNEMQSKMDRDQEPQKTVHHFFDEWSPKHRESWDDLDDKSSNTGSVSATRLSMSIPNTDSFIFSSNKRPLMDRVASWFPAASESHPFLYSSHITAVKAQSGFHRFPLPRVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNSPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQIMDEFFDVWQEAMSKSSLPGRFMHIESNFAEYGLSDFYTPQHTAVQYGNVMAQLIATVQAVQSARN 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28919573 28925554 - MELO3C004649.2.1 Cme05g02069 329132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g02069 568 MobiDBLite consensus disorder prediction 122 149 - -
Cme05g02069 568 Pfam QLQ 8 41 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cme05g02069 568 PANTHER UBIQUITIN SPECIFIC PROTEASE HOMOLOG 49 354 562 IPR013921 GO:0003712|GO:0006357|GO:0016592
Cme05g02069 568 Pfam WRC 80 122 IPR014977 -
Cme05g02069 568 ProSiteProfiles WRC domain profile. 79 123 IPR014977 -
Cme05g02069 568 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 20 354 562 - -
Cme05g02069 568 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cme05g02069 568 SMART QLQ_2 7 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cme05g02069 568 Pfam TATA-binding related factor (TRF) of subunit 20 of Mediator complex 354 553 IPR013921 GO:0003712|GO:0006357|GO:0016592
Cme05g02069 568 MobiDBLite consensus disorder prediction 106 162 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01295 Cme-Chr4:18167269 Cme05g02069 Cme-Chr5:28919573 5.48E-60 dispersed
Cme05g02069 Cme-Chr5:28919573 Cme08g00671 Cme-Chr8:4390038 1.28E-36 dispersed
Cme05g01610 Cme-Chr5:25229454 Cme05g02069 Cme-Chr5:28919573 9.87E-06 transposed
Cme11g00639 Cme-Chr11:7385987 Cme05g02069 Cme-Chr5:28919573 3.24E-06 transposed
Cme02g00291 Cme-Chr2:2416702 Cme05g02069 Cme-Chr5:28919573 1.36E-106 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41391 PF08612 Med20 5.50E-37 CL0273 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g02069 K13528 - csv:101214722 592.423