Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme05g02069 | ATGAGCGCAAGAAACAGGTTTCCGTTCACAGCAGCTCAGTGGCAAGAGCTTGAGCACCAAGCTCTGATCTTCAAGTACATGGTCTCCGGCGTCCCTATCCCTCCCGAACTGCTTTACAGCATTAAGGCAACCTCTTTGGACACTCCTTTCATTTCCAGGCTCTTTCCTCACCAATATCCACAAGTTTCAGCAGTTGGATGGAACTACTTGCAGATGGGTTCTGGGAGGAAAATTGATCCTGAGCCTGGAAGGTGCAGAAGAACAGACGGTAAGAAATGGAGATGCTCCAAAGAGGCATACCCAGATTCTAAATACTGTGAGAGACATATGCACAGAGGTAAAAACCGTTCAAGAAAGCCTGTGGAACAAGTTTCGAAAACAACTCCTCTAAACTCTTCTAATCCATCCACCCCAGCCATCTCATCCATCACCCACAACTCTGAAACTCATCCCCATCCCCACCCTTTTCACTATCAAAGTCCCTCTGCTGCTTCTTCTTATCCATCCTTACTTCCGGATTACAGGTATGTTTATGGGGAGAAGGAAGAAGATTTCTTTGTAAGGGAACAACATTCTGGAAACGTAAGAGGTTTCACTGGTTCGTCTATGGATGATTCGTGGCAGCTAACTCCTCTGACAATGAGTTGCTCTTCCTCATCCTCCAGATACAAGAACTGCTCTGCTTTACAAGGTGATTACTCTTCTTACTTACAGCTGCAGAGCTTTGGAAAATATAATGAGATGCAGAGTAAGATGGACAGAGATCAGGAACCACAGAAGACAGTGCATCATTTTTTTGATGAATGGTCTCCTAAACATAGAGAGTCTTGGGATGATTTGGATGATAAGTCATCTAATACTGGCTCAGTTTCGGCAACTCGGCTTTCAATGTCTATTCCTAACACAGACTCCTTCATCTTCAGTTCCAATAAGCGGCCCCTAATGGACCGCGTTGCTTCGTGGTTTCCTGCTGCCTCAGAGTCTCACCCCTTTCTTTACAGTTCACACATCACGGCTGTAAAAGCCCAGAGCGGTTTTCACCGTTTTCCTTTGCCCAGGGTTTTGCATTGGCAACCCAATGCCGGCAGCACTGTTAACAGTCAGATACTCAACGAGGTTTCGCAATGTGTTGAGAGTATCCATGGCGTTAAAGGGGGCAAGTGGAAAGCTACTCTCACTTTCTACAAACCCATCTTGCGAGACCAGAACTCGCCGGCGGCCGAATTCCCCCGCGACTTTCTCGGAATTTCGCTGCCGGAGCAGCCAAACAAGTATTACCTTATAATTCGTGGCCAACGGATCGTCTTGGAAGCTGATTTTACGATTCAGGCTATAATGGAGAAGCTGCAGTCGTACAAATTGCGCGTTGCTCTCAATTTCGAGTATCAGTTAGGGGATTTCCAACTGAGAGTGGGAAAAGTTGTTCCCAACAATTCCGAGAATTTGAGAGGAATAGTTATGGAGATCGAGTATCTCCCAATTTCTTCAATGGAGAAATCAAGACAGATAATGGATGAGTTCTTCGATGTATGGCAAGAAGCCATGTCAAAAAGTTCATTACCAGGTCGTTTCATGCACATAGAATCAAACTTTGCAGAATATGGACTATCGGATTTCTATACTCCTCAACACACAGCAGTTCAATATGGCAACGTCATGGCTCAACTAATCGCTACTGTGCAAGCAGTTCAATCCGCTAGAAATTAG | 1707 | 45.34 | MSARNRFPFTAAQWQELEHQALIFKYMVSGVPIPPELLYSIKATSLDTPFISRLFPHQYPQVSAVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEQVSKTTPLNSSNPSTPAISSITHNSETHPHPHPFHYQSPSAASSYPSLLPDYRYVYGEKEEDFFVREQHSGNVRGFTGSSMDDSWQLTPLTMSCSSSSSRYKNCSALQGDYSSYLQLQSFGKYNEMQSKMDRDQEPQKTVHHFFDEWSPKHRESWDDLDDKSSNTGSVSATRLSMSIPNTDSFIFSSNKRPLMDRVASWFPAASESHPFLYSSHITAVKAQSGFHRFPLPRVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNSPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQIMDEFFDVWQEAMSKSSLPGRFMHIESNFAEYGLSDFYTPQHTAVQYGNVMAQLIATVQAVQSARN | 568 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 28919573 | 28925554 | - | MELO3C004649.2.1 | Cme05g02069 | 329132 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme05g02069 | 568 | MobiDBLite | consensus disorder prediction | 122 | 149 | - | - | |
Cme05g02069 | 568 | Pfam | QLQ | 8 | 41 | IPR014978 | GO:0005524|GO:0005634|GO:0006355 | |
Cme05g02069 | 568 | PANTHER | UBIQUITIN SPECIFIC PROTEASE HOMOLOG 49 | 354 | 562 | IPR013921 | GO:0003712|GO:0006357|GO:0016592 | |
Cme05g02069 | 568 | Pfam | WRC | 80 | 122 | IPR014977 | - | |
Cme05g02069 | 568 | ProSiteProfiles | WRC domain profile. | 79 | 123 | IPR014977 | - | |
Cme05g02069 | 568 | PANTHER | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 20 | 354 | 562 | - | - | |
Cme05g02069 | 568 | ProSiteProfiles | QLQ domain profile. | 8 | 43 | IPR014978 | GO:0005524|GO:0005634|GO:0006355 | |
Cme05g02069 | 568 | SMART | QLQ_2 | 7 | 43 | IPR014978 | GO:0005524|GO:0005634|GO:0006355 | |
Cme05g02069 | 568 | Pfam | TATA-binding related factor (TRF) of subunit 20 of Mediator complex | 354 | 553 | IPR013921 | GO:0003712|GO:0006357|GO:0016592 | |
Cme05g02069 | 568 | MobiDBLite | consensus disorder prediction | 106 | 162 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme04g01295 | Cme-Chr4:18167269 | Cme05g02069 | Cme-Chr5:28919573 | 5.48E-60 | dispersed | |
Cme05g02069 | Cme-Chr5:28919573 | Cme08g00671 | Cme-Chr8:4390038 | 1.28E-36 | dispersed | |
Cme05g01610 | Cme-Chr5:25229454 | Cme05g02069 | Cme-Chr5:28919573 | 9.87E-06 | transposed | |
Cme11g00639 | Cme-Chr11:7385987 | Cme05g02069 | Cme-Chr5:28919573 | 3.24E-06 | transposed | |
Cme02g00291 | Cme-Chr2:2416702 | Cme05g02069 | Cme-Chr5:28919573 | 1.36E-106 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41391 | PF08612 | Med20 | 5.50E-37 | CL0273 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme05g02069 | K13528 | - | csv:101214722 | 592.423 |