Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g02083 ATGAAAGCTCCCTCGAATGGGTTTCTAGCCAATTCTGGAGAAGGTGAAAGGAAGAATATTAATTCTGAGTTATGGCATGCTTGTGCTGGGCCTCTTGTTTCGTTACCTCCAGTAGGAAGTCTTGTGGTTTACTTCCCTCAAGGCCACAGTGAACAAGTTGCAGCATCGATGAATAAGGAGACTGATTTCATTCCAAACTACCCTAACCTTCCTTCAAAGTTGATCTGCATGCTCCACAATGTCACGTTACATGCTGATCCTGAGACTGATGAGGTGTATGCACAAATGACCCTTCAACCAGTGAATAAATATGAAAAAGAAGCTTTGTTGGCATCTGATATTGGCCTCAAGCAAAGCAGGCAGCCTGCAGAATTCTTCTGCAAAACTCTAACAGCCAGTGACACTAGCACTCATGGTGGATTTTCTGTGCCTCGTCGTGCAGCCGAGAAGATTTTCCCCCCATTAGACTACTCGATGCAACCCCCTGCTCAGGAACTAGTGGCTAGAGATTTGCATGATAATTCGTGGACATTCAGACATATTTACCGCGGCCAACCAAAACGACACCTTCTGACCACTGGTTGGAGTGTTTTTGTGAGCACAAAACGACTCTTTGCTGGAGACTCTGTGCTCTTTATAAGAGATGAAAAGTCACAGCTTCTCTTAGGCATAAGGCGTGCTAACAGGCAGCAGCCAGCTCTCTCTTCATCAGTCATATCAAGTGATAGCATGCACATAGGAATTCTTGCTTCTGCGGCTCATGCTGCTGCAAATAACAGTCCGTTTACTATATTTTACAACCCCAGGGCCAGTCCTTCTGAATTTGTGATACCTTTGGCCAAGTATAATAAAGCAATGTACATGCAAGTTTCACTTGGCATGCGATTTAGGATGATGTTTGAAACTGAGGAGTCGGGAGTACGCAGATATATGGGTACAATTACTGGTATAAGCGACATGGATTCTGTAAGATGGAAAAATTCACAGTGGAGAAATCTTCAGGTTGGATGGGATGAATCGGCAGCTGGTGAACGACCTAATCGAGTTTCAATATGGGAAGTTGAGCCTGTTGTGACTCCCTTTTACATATGCCCGCCTCCATTCTTCAGACCCAAATTCCCTAAACAACAAGGGATGCCAGTGACCTTTATGTTTTATCATGCAGATGACGAATCTGATATTGAAAATGCTTTTAAGAGAGCCATGCCATGGTTTGGTGATGACTTTGGCATGAAAGATACGCCAAGCTCAATCTTTCCTGGTTTAAGTTTAGTGCAGTGGATGAGCATGCAACATAATAATCAGTTCCCAGCAGCACAATCTGGAATTTTGCCGTCTGTGGTTGCGCCTAGTGCTTTGCATGGAACTCTTACCAATGATGACCCATCCAAATTATTGAGTTTTCAAGCACCAGTACTGTCTTCACCAAATCTCCAATTCAGCAAAGCAAATCAACAGAACCAAGTTGGCCAAATGCCTCCAACTACGTGGTCCCAACAGCAGCAGCTGCAGCAATTGTTACAAGTTTCTGCAAGCCAACAGTTACAGCAGCAGCAATTGCCACCCCAGGAACAACAGCAGCAACAACAACTGCAGCAGCTGCCCCAGCAGCAGCAACTCCAGTCACAACAGTCACAGCGGCACCAGCAGACCTCGCAATCTGTTCTTCTTAACAACAGTGTAACTCCTGCTAACCATTTGCCAAATCCAAGTTTGCAACAACCGCTTGTATACTCTCAGCTACAACAGCAGCAATTGCTTGCAAGCAATATTCAATCCCATCAAACTAGTCAACCATCTAATAAGAATTCATTTCAGACTACATCTTTATCAGAAGAAACACAGCTTCAGCCACAAATAGAGCAGCAATCTAGCCTTCTTCCGAGACAGCAGCAGCCGACACAATTTCAACAGGCCCCACTACAATTATTGCAACAAAGTCTGTCTCAAAAAGCACAACAGCAGCCTCAAGTTCAGCAATTTTCACAGCCAATCCCAACTGAGCAACAACTTCAATTGCAGCTGCTACAGAAGCTCCAGCAACAACACCAGCAACAACCGTTGCTTTCCCCAGCTAGCCCACTATTACCGCCTCAGCTGCTACAGCAGCAACACATTCATCAGCAGAACCAGCAGTTACCACCATTGCCATTGCCCAATCAGCAGCAGTTCAATACTAGTGGAGGCAGCTTCCAAACAGAAAAACTTAATAGCAATGGCTTTGCAAGTTTAGGTCTCATGCAGTCCCAGCAGGTTCCCATAACCCAATCCCATAATCAATTCAAACCAACCACGGCAATTAGAGCATACTCTGGACTGACTGAAGGAGATGCTCCATCTTGTTCTACCTCACCTTCCACTAATAATTGCCCAGTTCCTGTATCAAACCTGCTCAATAAGAACCAACAAGGAGCAGCCACACTTGGTGGAGATTCGGTAGTTGAGCCTGCAACTAACCCGCCACAGGAGCTACATAGCAAACCTGATTTGCGGATCAAACATGAGTTTCCTAACTCAAAAGGATTGGACCAACTAAAATATAAAGGCACTGTTCCTGATCAGTTAGAAGGATCTTCTTCCGGGACATCATATTGTTTGGATGCTGGCACCATTCGGCAGGCTCTCCCACTCCCTACATGTTTGGATAATGATGTACAGTCACATCCACGTAACAACATCCCTTTCAGTAATAGCATTGATGTATTGACACCAGATACCCTATTGTCAAGGGGATATGACTCTCAAAAAGATCTTCAGAACTTACTTTCTAACTATGGTGGTGGTGTGCCAAGGGATATTGAAACAGAGTTGTCGACTGCTGCAATCAGCTCCCAGTCCTTTGGGGTTCCAAACCTACCTTTCAAGCCTGGCTGCTCAAATGATGTTAACGTAAATGAAGCTGGAGCTTTGAGTAGTGGATTGTGGGCAAACCACAGTCAACGCATGCGTACATATACAAAGGTTCAAAAGCGTGGATCAGTGGGTAGATGTATCGATGTCACTCGCTACAAAGGATATGACGAGCTTAGGCACGATCTTGCCCGCATGTTTGGCATTGAAGGGCAGTTAGAAGATCCTCAACGAACTGATTGGAAACTTGTTTATGTGGACCATGAAAATGATATACTTCTAGTTGGTGATGATCCTTGGGAGGAGTTTGTGAGCTGTGTTCAGAGCATAAAGATCCTGTCATCCGCTGAAGTACAGCAGATGAGTTTGGATGGGAATTTGGGTCACATTCAGGCTCCAAATCAAGCTTGCAGTGGGACAGATAGTGGAAATGCATGGAGAGGGCAGTATGATGACAACTCGGCTGCATCGTTCAATCGATGA 3333 44.97 MKAPSNGFLANSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLICMLHNVTLHADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQSRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVARDLHDNSWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALSSSVISSDSMHIGILASAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYMQVSLGMRFRMMFETEESGVRRYMGTITGISDMDSVRWKNSQWRNLQVGWDESAAGERPNRVSIWEVEPVVTPFYICPPPFFRPKFPKQQGMPVTFMFYHADDESDIENAFKRAMPWFGDDFGMKDTPSSIFPGLSLVQWMSMQHNNQFPAAQSGILPSVVAPSALHGTLTNDDPSKLLSFQAPVLSSPNLQFSKANQQNQVGQMPPTTWSQQQQLQQLLQVSASQQLQQQQLPPQEQQQQQQLQQLPQQQQLQSQQSQRHQQTSQSVLLNNSVTPANHLPNPSLQQPLVYSQLQQQQLLASNIQSHQTSQPSNKNSFQTTSLSEETQLQPQIEQQSSLLPRQQQPTQFQQAPLQLLQQSLSQKAQQQPQVQQFSQPIPTEQQLQLQLLQKLQQQHQQQPLLSPASPLLPPQLLQQQHIHQQNQQLPPLPLPNQQQFNTSGGSFQTEKLNSNGFASLGLMQSQQVPITQSHNQFKPTTAIRAYSGLTEGDAPSCSTSPSTNNCPVPVSNLLNKNQQGAATLGGDSVVEPATNPPQELHSKPDLRIKHEFPNSKGLDQLKYKGTVPDQLEGSSSGTSYCLDAGTIRQALPLPTCLDNDVQSHPRNNIPFSNSIDVLTPDTLLSRGYDSQKDLQNLLSNYGGGVPRDIETELSTAAISSQSFGVPNLPFKPGCSNDVNVNEAGALSSGLWANHSQRMRTYTKVQKRGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGNLGHIQAPNQACSGTDSGNAWRGQYDDNSAASFNR 1110
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29030924 29046586 + MELO3C004665.2.1 Cme05g02083 329146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g02083 1110 CDD B3_DNA 125 226 IPR003340 GO:0003677
Cme05g02083 1110 PANTHER AUXIN RESPONSE FACTOR 19 1 1098 - -
Cme05g02083 1110 Gene3D - 289 360 - -
Cme05g02083 1110 MobiDBLite consensus disorder prediction 1091 1110 - -
Cme05g02083 1110 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Cme05g02083 1110 Gene3D - 978 1072 - -
Cme05g02083 1110 MobiDBLite consensus disorder prediction 590 634 - -
Cme05g02083 1110 Pfam AUX/IAA family 980 1069 IPR033389 -
Cme05g02083 1110 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cme05g02083 1110 Gene3D - 124 227 IPR015300 -
Cme05g02083 1110 MobiDBLite consensus disorder prediction 776 808 - -
Cme05g02083 1110 SMART B3_2 126 228 IPR003340 GO:0003677
Cme05g02083 1110 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Cme05g02083 1110 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Cme05g02083 1110 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 1098 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cme05g02083 1110 SUPERFAMILY CAD & PB1 domains 996 1061 - -
Cme05g02083 1110 MobiDBLite consensus disorder prediction 775 829 - -
Cme05g02083 1110 MobiDBLite consensus disorder prediction 704 736 - -
Cme05g02083 1110 ProSiteProfiles PB1 domain profile. 983 1076 IPR000270 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme02g00351 Cme05g02083 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00486 Cme-Chr4:3889065 Cme05g02083 Cme-Chr5:29030924 1.49E-37 dispersed
Cme05g01243 Cme-Chr5:20106958 Cme05g02083 Cme-Chr5:29030924 0 dispersed
Cme05g02083 Cme-Chr5:29030924 Cme12g01152 Cme-Chr12:19599255 7.09E-21 dispersed
Cme11g01785 Cme-Chr11:26016763 Cme05g02083 Cme-Chr5:29030924 7.08E-20 dispersed
Cme05g02083 Cme-Chr5:29030924 Cme08g00111 Cme-Chr8:821892 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41392 PF02309 AUX_IAA 2.30E-09 CL0072 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g02083 K14486 - csv:101210917 1740.32