Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g02085 ATGGGCGCTGTTCGAATTGTGTTCTTGATCATCCTTGTGGGGGGTGGTGGCCTACCTTTGTGTTGTCCCTTGTCCGAGAACGAGGCTCTGCTGAAGCTGAAGGAATCATTTACTCATTCTGAATCCTTGAATTCCTGGAACCCAGACTCAGTACCCTGCTCGGCTCAATGGACTGGCATCATCTGTAATAGGGGCGTCATCACGGGCCTACATCTCTCCGACCTTCAACTGTCAGGCAAGATCGACGTGGAAGCTCTCCTCCAGCTTCGTGGTCTTCGAACCATTAGCTTCGTCAACAACAAATTCTCCGGCCCCATTCCGGAATTCAACAAAATTGGCGTTCTCAAGTCCCTCCTCCTCACTGGGAACCACTTCTCCGGGGCTATCCCAAGCGATTTCTTTTCCTCTCTTACCTCCCTAAAAAAGGTGTGGCTCTCCTCCAACAACTTCTCCGGAAACATTCCACACTCTCTGGCACAACTCTCTCATTTGATCGAACTCCACCTTGAGAGCAACCAATTCTCGGGGCCCATCCCCCACCTCAAACACGCCTCCATCATAACCTCCCTTGATCTCTCCAACAACAAGCTCGAGGGTCAAATACCGGACATCCTCTCCAAATTCGACGCGAAGGCATTTGCTGGAAACGAAGGCCTCTGCGGGAACCCACTCCCCAAATCTTGCGGGGCCCGGATTCCTGAAGATCAGAAGCCCTCTTCTTCACCTCCTGGGGAATCTCAAGGTAACGTTTCTAAGTTGGTTGTGGCATCCTTGATAGCCGTGACTGTATTTCTGATGGTGTTCATATTCCTGAGCGCCTCCAAGAGGAGAGAGGATGAGTTCAGCGTGCTGGGGAGGGAGCGGATGGAGGAGGTGGTGGAGGTGCACGTCCCGAGTTCTGGCCACGACAAGCAGTCGAGTAGAAAAGGAGGTGGGGACTCCAAGAGAGGCTCACAACAGGGGAAGGCGGGGATGAGCGATCTCGTGGTGGTCAATGAAGACAAAGGTATATTTGGGTTGGCGGATTTGATGAAGGCAGCAGCAGAGGTTCTAGGGAATGGGGGCTTGGGCTCCGCATACAAGGCGGTCATGTCCAACGGGCTGTCGGTGGTGGTAAAGAGAATGAGAGAGATGAACAAACTAGGGAAGGATGGGTTCGATGCAGAGATGAGGCGTCTTGGAAGACTGCGCCATCACAACATATTAACGCCTTTGGCCTATCATTACAGGAGAGAGGAGAAACTGTTGGTGTCAGAATACATTCCAAAGGGAAGCCTCTTGTATGTGTTGCATGGTGACCGTGGAGCCTGCCATGCGGACCTCAACTGGGCCACCCGATTAAGGATCGTGCAGGGGATCGCAAGGGGATTGGGGTTCCTACATTCAGAATTTGCAACCTATGATCTGCCGCATGGGAATCTGAAATCTAGCAACGTTCTTCTATGCGACAACTATGAGCCACTTCTGAGCGACTACGCCTTCCATCCCCTTATCAATCCCAACAATGCGACACAAGCAATGTTCGCATACAGATCCCCTGAGTACGCCCAATACCAAGAAGTCTCTCCCAAGTCTGATGTTTATTGTCTTGGCATTATCATTCTTGAAATCATGACCAGTAAATTTCCTTCTCAATATCTTACAAATGGCAAGGGTGGCACCGATGTGGTGCAATGGGTCTCCTCCGCCGTTTCTGAGAAGAGGGAGGCTGAACTCATCGATCCTGAGATTGCAAACGACACTGATGCACTTGATCGCATGGTCAACCTCCTCACAATAGGTGCAGATTGCACCCATAACAATCCTCAGCAACGGCCAGAAATGAGGGAAGCCATTAGGAGAATAGAAGAGATATGA 1857 51.05 MGAVRIVFLIILVGGGGLPLCCPLSENEALLKLKESFTHSESLNSWNPDSVPCSAQWTGIICNRGVITGLHLSDLQLSGKIDVEALLQLRGLRTISFVNNKFSGPIPEFNKIGVLKSLLLTGNHFSGAIPSDFFSSLTSLKKVWLSSNNFSGNIPHSLAQLSHLIELHLESNQFSGPIPHLKHASIITSLDLSNNKLEGQIPDILSKFDAKAFAGNEGLCGNPLPKSCGARIPEDQKPSSSPPGESQGNVSKLVVASLIAVTVFLMVFIFLSASKRREDEFSVLGRERMEEVVEVHVPSSGHDKQSSRKGGGDSKRGSQQGKAGMSDLVVVNEDKGIFGLADLMKAAAEVLGNGGLGSAYKAVMSNGLSVVVKRMREMNKLGKDGFDAEMRRLGRLRHHNILTPLAYHYRREEKLLVSEYIPKGSLLYVLHGDRGACHADLNWATRLRIVQGIARGLGFLHSEFATYDLPHGNLKSSNVLLCDNYEPLLSDYAFHPLINPNNATQAMFAYRSPEYAQYQEVSPKSDVYCLGIIILEIMTSKFPSQYLTNGKGGTDVVQWVSSAVSEKREAELIDPEIANDTDALDRMVNLLTIGADCTHNNPQQRPEMREAIRRIEEI 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29058644 29061578 + MELO3C004667.2.1 Cme05g02085 329148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g02085 618 Gene3D Ribonuclease Inhibitor 24 182 IPR032675 -
Cme05g02085 618 Pfam Leucine rich repeat 115 174 IPR001611 GO:0005515
Cme05g02085 618 MobiDBLite consensus disorder prediction 294 325 - -
Cme05g02085 618 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 19 618 - -
Cme05g02085 618 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 19 618 - -
Cme05g02085 618 SUPERFAMILY L domain-like 21 207 - -
Cme05g02085 618 MobiDBLite consensus disorder prediction 294 311 - -
Cme05g02085 618 Pfam Leucine rich repeat N-terminal domain 25 63 IPR013210 -
Cme05g02085 618 Gene3D Phosphorylase Kinase; domain 1 313 420 - -
Cme05g02085 618 Gene3D Transferase(Phosphotransferase) domain 1 421 618 - -
Cme05g02085 618 ProSiteProfiles Protein kinase domain profile. 345 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g02085 618 Gene3D Ribonuclease Inhibitor 183 231 IPR032675 -
Cme05g02085 618 Pfam Protein kinase domain 349 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g02085 618 SUPERFAMILY Protein kinase-like (PK-like) 349 614 IPR011009 -
Cme05g02085 618 MobiDBLite consensus disorder prediction 227 247 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g02085 Cme-Chr5:29058644 Cme07g00938 Cme-Chr7:9844632 2.43E-147 dispersed
Cme05g02085 Cme-Chr5:29058644 Cme04g00319 Cme-Chr4:2496731 6.96E-141 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64919 PF00069 Pkinase 1.90E-26 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g02085 - - cmo:103498999 1160.59