Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00007 ATGGAAACTGGAACCCAGACCCAAAGATCATCAGGAAGAGGGGAGGATTATGAAGTTCAAGTGTCGTTCCACCTCTCAAATGATCCACACCACATCCACGAAATGGGATTTGTGCAGTTGGAAGAGCACAGCCAGGTTTTGAGCTTCTTGGCACCCAACAACAACAACAACAACGCCACCAATATGCCACCTCCTCCCTTTACTACTACTTCTCCCCATTCCAACATCCTCCCTCGACCACCTTCTTGGACTAATCACCAGCTGCCTGGAACACTGGATCCCAAGCCCGGTAATGACGAAAACTGCACGGCTACTGCTACTGATGCCACCAATTCATGGTGGAGAAACACAAACGCGGATAAGAGTAAGGTGAAGGTAAGGAGAAAGCTGAGAGAACCACGTTTCTGTTTTCAGACCAGAAGCGATGTTGATGTGCTGGACGATGGCTATAAATGGAGAAAATATGGCCAAAAAGTTGTCAAGAACAGCCTTCATCCTAGAAGCTACTATCGTTGCACGCATAGCAACTGCCGAGTGAAGAAGAGGGTAGAGCGACTGTCGGAGGATTGCCGGATGGTGATAACCACTTACGAAGGTAGACACAACCACTCTCCTTGCGATGACTCCAATTCTTCGGAGCACGAACCCTTTACATCATTCTGA 663 48.27 METGTQTQRSSGRGEDYEVQVSFHLSNDPHHIHEMGFVQLEEHSQVLSFLAPNNNNNNATNMPPPPFTTTSPHSNILPRPPSWTNHQLPGTLDPKPGNDENCTATATDATNSWWRNTNADKSKVKVRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSSEHEPFTSF 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 80360 82323 + MELO3C005937.2.1 Cme06g00007 329156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00007 220 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 24 216 IPR044810 GO:0003700
Cme06g00007 220 SMART WRKY_cls 146 205 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme06g00007 220 Pfam WRKY DNA -binding domain 147 203 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme06g00007 220 SUPERFAMILY WRKY DNA-binding domain 138 204 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme06g00007 220 MobiDBLite consensus disorder prediction 201 220 - -
Cme06g00007 220 Gene3D WRKY domain 132 206 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme06g00007 220 PANTHER WRKY TRANSCRIPTION FACTOR 12-RELATED 24 216 - -
Cme06g00007 220 ProSiteProfiles WRKY domain profile. 141 203 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00007 Cme-Chr6:80360 Cme09g00236 Cme-Chr9:1797171 1.95E-19 dispersed
Cme08g00470 Cme-Chr8:2897116 Cme06g00007 Cme-Chr6:80360 1.46E-20 dispersed
Cme06g00007 Cme-Chr6:80360 Cme11g00203 Cme-Chr11:2425562 1.77E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41394 PF03106 WRKY 1.30E-24 CL0274 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00007 - - csv:101216931 446.432