Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00007 ATGGAAACTGGAACCCAGACCCAAAGATCATCAGGAAGAGGGGAGGATTATGAAGTTCAAGTGTCGTTCCACCTCTCAAATGATCCACACCACATCCACGAAATGGGATTTGTGCAGTTGGAAGAGCACAGCCAGGTTTTGAGCTTCTTGGCACCCAACAACAACAACAACAACGCCACCAATATGCCACCTCCTCCCTTTACTACTACTTCTCCCCATTCCAACATCCTCCCTCGACCACCTTCTTGGACTAATCACCAGCTGCCTGGAACACTGGATCCCAAGCCCGGTAATGACGAAAACTGCACGGCTACTGCTACTGATGCCACCAATTCATGGTGGAGAAACACAAACGCGGATAAGAGTAAGGTGAAGGTAAGGAGAAAGCTGAGAGAACCACGTTTCTGTTTTCAGACCAGAAGCGATGTTGATGTGCTGGACGATGGCTATAAATGGAGAAAATATGGCCAAAAAGTTGTCAAGAACAGCCTTCATCCTAGAAGCTACTATCGTTGCACGCATAGCAACTGCCGAGTGAAGAAGAGGGTAGAGCGACTGTCGGAGGATTGCCGGATGGTGATAACCACTTACGAAGGTAGACACAACCACTCTCCTTGCGATGACTCCAATTCTTCGGAGCACGAACCCTTTACATCATTCTGA 663 48.27 METGTQTQRSSGRGEDYEVQVSFHLSNDPHHIHEMGFVQLEEHSQVLSFLAPNNNNNNATNMPPPPFTTTSPHSNILPRPPSWTNHQLPGTLDPKPGNDENCTATATDATNSWWRNTNADKSKVKVRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSSEHEPFTSF 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 80360 82323 + MELO3C005937.2.1 Cme06g00007 329156

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00007 220 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 24 216 IPR044810 GO:0003700
Cme06g00007 220 SMART WRKY_cls 146 205 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme06g00007 220 Pfam WRKY DNA -binding domain 147 203 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme06g00007 220 SUPERFAMILY WRKY DNA-binding domain 138 204 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme06g00007 220 MobiDBLite consensus disorder prediction 201 220 - -
Cme06g00007 220 Gene3D WRKY domain 132 206 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme06g00007 220 PANTHER WRKY TRANSCRIPTION FACTOR 12-RELATED 24 216 - -
Cme06g00007 220 ProSiteProfiles WRKY domain profile. 141 203 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00007 - - - csv:101216931 446.432
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00007 Cme-Chr6:80360 Cme09g00236 Cme-Chr9:1797171 1.95E-19 dispersed
Cme08g00470 Cme-Chr8:2897116 Cme06g00007 Cme-Chr6:80360 1.46E-20 dispersed
Cme06g00007 Cme-Chr6:80360 Cme11g00203 Cme-Chr11:2425562 1.77E-45 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi15g530 . . . . . . . . . . Cma06g00935 . Car06g00779 . . Cpe08g00658 Cpe03g01694 . . . . . . . . . . . . . . . Cone15ag0338 . . Lsi05g01984 . . Cme06g00007 . . . . . . . . . . Cmo14g02053 . . . . . . . . . . . . . . . . . . . . . Csa03g00948 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme01g00537 . 104 390 WRKY Transcription Factor Family AT2G04880 50.5 4.2e-71 265.8
Cme09g00236 . 13 505 WRKY Transcription Factor Family AT2G03340 51.9 5.1e-118 421.8
Cme10g00381 . 21 420 WRKY Transcription Factor Family AT2G03340 58.6 5.3e-107 385.2
Cme10g00381 . 37 420 WRKY Transcription Factor Family AT1G13960 58.3 1.2e-100 363.6
Cme09g00236 . 140 459 WRKY Transcription Factor Family AT1G13960 53.1 5.4e-82 301.6
Cme06g02787 . 202 464 WRKY Transcription Factor Family AT1G13960 50.9 7.1e-66 248.1
Cme04g02759 . 160 383 WRKY Transcription Factor Family AT1G13960 53.1 3.0e-64 242.7
Cme06g02787 . 23 531 WRKY Transcription Factor Family AT4G26640 52.7 4.7e-127 451.8
Cme10g00381 . 126 376 WRKY Transcription Factor Family AT4G26640 51.4 1.0e-65 248.1
Cme04g02759 . 157 381 WRKY Transcription Factor Family AT5G07100 56.8 1.6e-65 246.1
Cme11g01709 . 140 312 WRKY Transcription Factor Family AT5G07100 57.4 2.4e-56 215.7
Cme02g01060 . 189 512 WRKY Transcription Factor Family AT4G30935 61.5 1.2e-100 364.0
Cme06g02711 . 350 634 WRKY Transcription Factor Family AT2G38470 51.9 1.7e-68 257.3
Cme10g00381 . 127 375 WRKY Transcription Factor Family AT2G38470 55.6 2.2e-68 256.9
Cme06g02787 . 210 452 WRKY Transcription Factor Family AT2G38470 55.1 7.3e-64 241.9
Cme09g00236 . 233 461 WRKY Transcription Factor Family AT2G38470 53.4 2.0e-61 233.8
Cme06g01785 . 75 166 WRKY Transcription Factor Family AT3G01970 77.2 1.2e-38 156.4
Cme04g01727 . 12 311 WRKY Transcription Factor Family AT1G80840 50.2 3.0e-65 245.7
Cme08g00421 . 113 603 WRKY Transcription Factor Family AT1G62300 53.6 4.4e-107 385.6
Cme12g01756 CCT,ECH 250 414 WRKY Transcription Factor Family AT1G62300 51.5 3.7e-37 153.3
Cme06g01299 . 246 330 WRKY Transcription Factor Family AT1G62300 82.4 1.1e-36 151.8
Cme02g01901 CCT,ECH 262 347 WRKY Transcription Factor Family AT1G68150 84.9 4.5e-39 159.1
Cme01g00436 . 181 278 WRKY Transcription Factor Family AT1G68150 75.5 6.5e-38 155.2
Cme08g00421 . 350 447 WRKY Transcription Factor Family AT1G68150 73.5 1.2e-36 151.0
Cme08g00421 . 51 592 WRKY Transcription Factor Family AT4G22070 50.9 6.8e-105 378.3
Cme06g01299 . 238 329 WRKY Transcription Factor Family AT4G22070 79.3 1.2e-37 154.8
Cme12g01756 CCT,ECH 246 423 WRKY Transcription Factor Family AT4G22070 53.4 3.6e-37 153.3
Cme08g00421 . 131 593 WRKY Transcription Factor Family AT4G04450 52.3 5.0e-98 355.1
Cme01g00436 . 1 405 WRKY Transcription Factor Family AT4G04450 52.1 2.0e-91 333.2
Cme01g00436 . 180 268 WRKY Transcription Factor Family AT1G18860 75.3 7.8e-37 152.1
Cme06g01299 . 246 387 WRKY Transcription Factor Family AT5G15130 71.1 6.5e-41 165.6
Cme06g00007 . 111 220 WRKY Transcription Factor Family AT2G44745 81.4 7.9e-52 200.7
Cme11g00203 . 201 287 WRKY Transcription Factor Family AT2G44745 81.6 3.2e-37 152.1
Cme11g00203 . 194 301 WRKY Transcription Factor Family AT4G39410 78.8 1.5e-45 180.3
Cme07g01613 . 112 202 WRKY Transcription Factor Family AT5G41570 82.4 3.6e-42 168.3
Cme08g00164 . 89 262 WRKY Transcription Factor Family AT4G18170 55.6 6.1e-45 178.3
Cme01g01544 . 103 225 WRKY Transcription Factor Family AT4G18170 65.9 5.0e-39 158.7
Cme06g00800 CCT,ECH 1 167 WRKY Transcription Factor Family AT5G49520 52.4 9.7e-40 161.4
Cme01g01544 . 124 271 WRKY Transcription Factor Family AT5G49520 57.6 3.7e-39 159.5
Cme08g00164 . 90 182 WRKY Transcription Factor Family AT5G49520 75.3 3.5e-37 152.9
Cme07g01613 . 103 204 WRKY Transcription Factor Family AT1G64000 74.5 1.0e-42 170.2
Cme03g01437 . 125 225 WRKY Transcription Factor Family AT1G69310 85.1 1.8e-48 189.9
Cme11g02090 CCT,ECH 143 249 WRKY Transcription Factor Family AT1G69310 69.2 1.1e-37 154.1
Cme08g00164 . 73 253 WRKY Transcription Factor Family AT1G29860 55.8 5.6e-50 194.9
Cme01g01544 . 107 222 WRKY Transcription Factor Family AT1G29860 70.7 2.0e-39 159.8
Cme06g01785 . 72 168 WRKY Transcription Factor Family AT5G13080 81.4 1.9e-41 165.6
Cme03g00112 . 50 147 WRKY Transcription Factor Family AT5G13080 76.5 2.7e-40 161.8
Cme04g00334 . 1 291 WRKY Transcription Factor Family AT4G31550 61.4 2.4e-87 318.9
Cme04g00334 . 1 349 WRKY Transcription Factor Family AT2G24570 60.1 1.5e-107 386.3
Cme01g02020 CCT 196 341 WRKY Transcription Factor Family AT2G24570 55.3 1.7e-42 170.2
Cme05g00464 CCT 188 339 WRKY Transcription Factor Family AT2G24570 54.6 9.2e-41 164.5
Cme08g00590 . 126 280 WRKY Transcription Factor Family AT2G30590 61.1 2.1e-44 176.8
Cme11g00698 . 160 285 WRKY Transcription Factor Family AT2G30590 68.2 8.1e-44 174.9
Cme04g00334 . 167 328 WRKY Transcription Factor Family AT2G30590 56.7 1.7e-41 167.2
Cme02g01624 . 127 270 WRKY Transcription Factor Family AT2G30590 55.8 6.4e-41 165.2
Cme01g02020 CCT 2 351 WRKY Transcription Factor Family AT5G28650 51.4 5.3e-76 281.6
Cme08g00590 . 130 289 WRKY Transcription Factor Family AT5G28650 60.0 2.7e-43 172.9
Cme11g00698 . 181 287 WRKY Transcription Factor Family AT5G28650 72.9 7.3e-41 164.9
Cme08g00057 . 230 344 WRKY Transcription Factor Family AT1G30650 86.1 6.7e-55 211.8
Cme06g00151 . 188 284 WRKY Transcription Factor Family AT1G30650 65.5 8.3e-37 151.8
Cme09g01938 . 157 331 WRKY Transcription Factor Family AT5G52830 51.3 2.5e-47 186.4
Cme06g00151 . 192 290 WRKY Transcription Factor Family AT5G52830 75.5 1.3e-40 164.1
Cme08g00057 . 233 343 WRKY Transcription Factor Family AT2G34830 90.1 1.8e-55 213.8
Cme06g00151 . 189 284 WRKY Transcription Factor Family AT2G34830 67.9 1.3e-37 154.5
Cme01g00313 . 16 282 WRKY Transcription Factor Family AT1G29280 50.2 1.1e-44 177.2
Cme01g00313 . 20 297 WRKY Transcription Factor Family AT3G58710 57.0 4.4e-52 201.8
Cme06g01105 . 99 251 WRKY Transcription Factor Family AT5G24110 51.0 1.8e-38 156.8
Cme01g00537 . 104 390 WRKY Transcription Factor Family AT2G04880 50.5 4.2e-71 265.8
Cme04g00334 . 1 291 WRKY Transcription Factor Family AT4G31550 61.4 2.4e-87 318.9
Cme06g00007 . 111 220 WRKY Transcription Factor Family AT2G44745 81.4 7.9e-52 200.7
Cme11g00203 . 201 287 WRKY Transcription Factor Family AT2G44745 81.6 3.2e-37 152.1
Cme11g00203 . 194 301 WRKY Transcription Factor Family AT4G39410 78.8 1.5e-45 180.3
Cme08g00057 . 230 344 WRKY Transcription Factor Family AT1G30650 86.1 6.7e-55 211.8
Cme06g00151 . 188 284 WRKY Transcription Factor Family AT1G30650 65.5 8.3e-37 151.8
Cme04g00334 . 1 349 WRKY Transcription Factor Family AT2G24570 60.1 1.5e-107 386.3
Cme01g02020 CCT 196 341 WRKY Transcription Factor Family AT2G24570 55.3 1.7e-42 170.2
Cme05g00464 CCT 188 339 WRKY Transcription Factor Family AT2G24570 54.6 9.2e-41 164.5
Cme06g02787 . 23 531 WRKY Transcription Factor Family AT4G26640 52.7 4.7e-127 451.8
Cme10g00381 . 126 376 WRKY Transcription Factor Family AT4G26640 51.4 1.0e-65 248.1
Cme08g00590 . 126 280 WRKY Transcription Factor Family AT2G30590 61.1 2.1e-44 176.8
Cme11g00698 . 160 285 WRKY Transcription Factor Family AT2G30590 68.2 8.1e-44 174.9
Cme04g00334 . 167 328 WRKY Transcription Factor Family AT2G30590 56.7 1.7e-41 167.2
Cme02g01624 . 127 270 WRKY Transcription Factor Family AT2G30590 55.8 6.4e-41 165.2
Cme07g01613 . 112 202 WRKY Transcription Factor Family AT5G41570 82.4 3.6e-42 168.3
Cme04g02759 . 157 381 WRKY Transcription Factor Family AT5G07100 56.8 1.6e-65 246.1
Cme11g01709 . 140 312 WRKY Transcription Factor Family AT5G07100 57.4 2.4e-56 215.7
Cme09g01938 . 157 331 WRKY Transcription Factor Family AT5G52830 51.3 2.5e-47 186.4
Cme06g00151 . 192 290 WRKY Transcription Factor Family AT5G52830 75.5 1.3e-40 164.1
Cme08g00164 . 89 262 WRKY Transcription Factor Family AT4G18170 55.6 6.1e-45 178.3
Cme01g01544 . 103 225 WRKY Transcription Factor Family AT4G18170 65.9 5.0e-39 158.7
Cme09g00236 . 13 505 WRKY Transcription Factor Family AT2G03340 51.9 5.1e-118 421.8
Cme10g00381 . 21 420 WRKY Transcription Factor Family AT2G03340 58.6 5.3e-107 385.2
Cme06g01105 . 99 251 WRKY Transcription Factor Family AT5G24110 51.0 1.8e-38 156.8
Cme08g00421 . 51 592 WRKY Transcription Factor Family AT4G22070 50.9 6.8e-105 378.3
Cme06g01299 . 238 329 WRKY Transcription Factor Family AT4G22070 79.3 1.2e-37 154.8
Cme12g01756 CCT,ECH 246 423 WRKY Transcription Factor Family AT4G22070 53.4 3.6e-37 153.3
Cme02g01060 . 189 512 WRKY Transcription Factor Family AT4G30935 61.5 1.2e-100 364.0
Cme06g02711 . 350 634 WRKY Transcription Factor Family AT2G38470 51.9 1.7e-68 257.3
Cme10g00381 . 127 375 WRKY Transcription Factor Family AT2G38470 55.6 2.2e-68 256.9
Cme06g02787 . 210 452 WRKY Transcription Factor Family AT2G38470 55.1 7.3e-64 241.9
Cme09g00236 . 233 461 WRKY Transcription Factor Family AT2G38470 53.4 2.0e-61 233.8
Cme08g00057 . 233 343 WRKY Transcription Factor Family AT2G34830 90.1 1.8e-55 213.8
Cme06g00151 . 189 284 WRKY Transcription Factor Family AT2G34830 67.9 1.3e-37 154.5
Cme10g00381 . 37 420 WRKY Transcription Factor Family AT1G13960 58.3 1.2e-100 363.6
Cme09g00236 . 140 459 WRKY Transcription Factor Family AT1G13960 53.1 5.4e-82 301.6
Cme06g02787 . 202 464 WRKY Transcription Factor Family AT1G13960 50.9 7.1e-66 248.1
Cme04g02759 . 160 383 WRKY Transcription Factor Family AT1G13960 53.1 3.0e-64 242.7
Cme04g01727 . 12 311 WRKY Transcription Factor Family AT1G80840 50.2 3.0e-65 245.7
Cme08g00421 . 131 593 WRKY Transcription Factor Family AT4G04450 52.3 5.0e-98 355.1
Cme01g00436 . 1 405 WRKY Transcription Factor Family AT4G04450 52.1 2.0e-91 333.2
Cme06g01785 . 75 166 WRKY Transcription Factor Family AT3G01970 77.2 1.2e-38 156.4
Cme06g00800 CCT,ECH 1 167 WRKY Transcription Factor Family AT5G49520 52.4 9.7e-40 161.4
Cme01g01544 . 124 271 WRKY Transcription Factor Family AT5G49520 57.6 3.7e-39 159.5
Cme08g00164 . 90 182 WRKY Transcription Factor Family AT5G49520 75.3 3.5e-37 152.9
Cme07g01613 . 103 204 WRKY Transcription Factor Family AT1G64000 74.5 1.0e-42 170.2
Cme03g01437 . 125 225 WRKY Transcription Factor Family AT1G69310 85.1 1.8e-48 189.9
Cme11g02090 CCT,ECH 143 249 WRKY Transcription Factor Family AT1G69310 69.2 1.1e-37 154.1
Cme08g00421 . 113 603 WRKY Transcription Factor Family AT1G62300 53.6 4.4e-107 385.6
Cme12g01756 CCT,ECH 250 414 WRKY Transcription Factor Family AT1G62300 51.5 3.7e-37 153.3
Cme06g01299 . 246 330 WRKY Transcription Factor Family AT1G62300 82.4 1.1e-36 151.8
Cme01g00436 . 180 268 WRKY Transcription Factor Family AT1G18860 75.3 7.8e-37 152.1
Cme01g00313 . 16 282 WRKY Transcription Factor Family AT1G29280 50.2 1.1e-44 177.2
Cme01g00313 . 20 297 WRKY Transcription Factor Family AT3G58710 57.0 4.4e-52 201.8
Cme08g00164 . 73 253 WRKY Transcription Factor Family AT1G29860 55.8 5.6e-50 194.9
Cme01g01544 . 107 222 WRKY Transcription Factor Family AT1G29860 70.7 2.0e-39 159.8
Cme06g01299 . 246 387 WRKY Transcription Factor Family AT5G15130 71.1 6.5e-41 165.6
Cme01g02020 CCT 2 351 WRKY Transcription Factor Family AT5G28650 51.4 5.3e-76 281.6
Cme08g00590 . 130 289 WRKY Transcription Factor Family AT5G28650 60.0 2.7e-43 172.9
Cme11g00698 . 181 287 WRKY Transcription Factor Family AT5G28650 72.9 7.3e-41 164.9
Cme06g01785 . 72 168 WRKY Transcription Factor Family AT5G13080 81.4 1.9e-41 165.6
Cme03g00112 . 50 147 WRKY Transcription Factor Family AT5G13080 76.5 2.7e-40 161.8
Cme02g01901 CCT,ECH 262 347 WRKY Transcription Factor Family AT1G68150 84.9 4.5e-39 159.1
Cme01g00436 . 181 278 WRKY Transcription Factor Family AT1G68150 75.5 6.5e-38 155.2
Cme08g00421 . 350 447 WRKY Transcription Factor Family AT1G68150 73.5 1.2e-36 151.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012883 1 1 0 1 2 1 2 0 0 1 0 0 1 1 1 1 0 3 1 0 1 1 1 1 1 1 1 2 1 1 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41394 PF03106 WRKY 1.30E-24 CL0274 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00007 Cme_Chr06 FPKM 11.508208 12.342242 19.294167 17.671192 18.200603 18.008865 18.81048 21.192961 21.245045 22.305391