Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00013 ATGAAGAGGATTCCAGAGTCAAAAGCACTACCATTATTTCTGCCCATAGAGATGCTTCCAGAATCAAATGTACTTCCAGGAAAATTTTGTGTTTTGGATGATATACCAAAAGCACATGTGGCCTCAGCCAAGCAAGCTGGCCACTGGTCGAACATGCACTCAGCTAAGGTAAGAGACGTTGGAAGATCAATTGGGCAAGGATTTCAAGATTCAGAAATTTCTGCACCTATACGGACATCGAAGGGAAAATCCTCTTTTTTGGGGCAGGAAGACGCTAAGCGTGATATCAATTTAAAGGGTAGTAGCTCTTTGATTGAGGAGGGTGGTCCAAGTTCCTTCTCTGGGGCTAGCCACCCGCCAGAGCCCGTGGATATGGATCTAATGAGAACTGTTTATGTACCCATTGGGCAAAATAAGCCTGATCCTGGCTGCTTGATGAAGAGTTTTTCCGTAAAGGGCCCTTTTCTGGAGGATCTTTCAATCAGGGTTCCAGCCAAGAAACCAAGCCCTGCTGTTCTCTCTCCTGCAGAAAGCTTAGTTGACGAGCTGCATGACTTGGGTGTTTTATCTTCCCCCTTCTCAATTCCTCGTGCATCACAAAATACAGAAACCTCTCTACTTCCCCCCGATTCTGAGGAGAAGGAATGCGTTTGGGATGCTTCTTTGCCACCAAGTGGCAATGTAAGTCCACACAGTAGCATTGACAGTAGTGGAATTGTCACAGCTATGAGCATTGTTAATAGTTGTGCTAGCACTTATCGAAGTGATGGAATGGTTAGTATTGAGCGGAACTGCGAGAGTGCAAAAGGAAGCATGAGAGGGGACTCTCTCGAGAGTGCAAAAACAAGTGTTAGTCGAGCTAGTGATAGCAGTGGTCTCAGTGACGATAGTAGTTGGAGCAATATCACAGGAAGTGCTAATAAGCCCCACAAAGGAAACGATCCGAGGTGGAAAGCCATCCTTGCTATTCGAGCAAGAGATGGAATATTAGGCATGAGCCATTTTAGACTGCTGAAAAGACTTGGTTGTGGTGATATTGGCAGTGTTTATCTCTCAGAGCTAAGTGGAACGCGCTGTTATTTTGCAATGAAAGTAATGGACAAGGCATCGCTTGCTATAAGGAAGAAGTTAACGAGAGCTCAGACAGAAAGGGAGATCTTGCAGTTACTTGACCATCCATTTCTGCCGACTTTGTACACCCATTTTGAGACTGACAGATTTTCCTGTCTAGTAATGGAATATTGTCCAGGGGGAGACCTGCACACTTTGAGGCAACGCCAACCGGGGAAACACTTCTCCGAGTATGCTGCGAGGTTCTATGCGGCAGAGGTTTTACTGGCTCTCGAATATCTTCACATGCTTGGAGTGGTCTATAGGGACTTGAAACCGGAGAATGTATTGGTTCGCGATGATGGCCACATAATGCTCTCAGATTTTGACCTTTCACTAAGATGCGCAGTGTCACCCACCCTGATAAAAACTTCATACGATTCTGACCCATCAAAACGAGCTGCATTCTGTGTCCAGCCTGCCTGTATTGAGCCATCATCAGTTTGCATCCAACCTGCATGTTTTATTCCTCGACTCTTCCCTCAGAAAAGCAAAAAGAAAAGTCCCAAGCCTCGAGGTGATCTGGGGTTGCAATCCAGTACTCTTCCTGAGCTGGTAGCAGAGCCTACTGCTGCCCGCTCCATGTCTTTTGTTGGCACCCATGAATACCTAGCCCCTGAAATCATCAAAGGAGAGGGTCATGGAAGTGCTGTTGACTGGTGGACTTTCGGCATTTTCTTGCACGAACTATTGTATGGAAAGACCCCCTTCAAGGGATCGGGAAACAGAGCCACACTATTCAACGTTGTAGGGCAGCAGCTGAAGTTCCCGGAGTCTCCAGCAACTAGTTATGCTAGCCGAGATCTTATTCGTGGTTTGCTAGTAAAGGAGCCCCAGCATCGACTCGGAGTGAAGAGGGGTGCAACGGAGATCAAGCAGCATCCTTTCTTTGAAGGTGTGAATTGGGCTTTGATACGATGCAGCACGCCCCCAGAAGTGCCAAGACCAATGGAGGCCGAACTGCCCAAGTTTGGGGTAGTTGACCCAACAGGGGTCGGCAGCAGCAGTAAGAGGATGGTAGGTACAGATGTTGTTAAGTCTGGTGGTCAATATCTTGACTTCGAGTTCTTTTAA 2184 46.98 MKRIPESKALPLFLPIEMLPESNVLPGKFCVLDDIPKAHVASAKQAGHWSNMHSAKVRDVGRSIGQGFQDSEISAPIRTSKGKSSFLGQEDAKRDINLKGSSSLIEEGGPSSFSGASHPPEPVDMDLMRTVYVPIGQNKPDPGCLMKSFSVKGPFLEDLSIRVPAKKPSPAVLSPAESLVDELHDLGVLSSPFSIPRASQNTETSLLPPDSEEKECVWDASLPPSGNVSPHSSIDSSGIVTAMSIVNSCASTYRSDGMVSIERNCESAKGSMRGDSLESAKTSVSRASDSSGLSDDSSWSNITGSANKPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSGTRCYFAMKVMDKASLAIRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSYDSDPSKRAAFCVQPACIEPSSVCIQPACFIPRLFPQKSKKKSPKPRGDLGLQSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLKFPESPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPMEAELPKFGVVDPTGVGSSSKRMVGTDVVKSGGQYLDFEFF 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 92673 98570 - MELO3C005942.2.1 Cme06g00013 329162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00013 727 MobiDBLite consensus disorder prediction 193 214 - -
Cme06g00013 727 SUPERFAMILY Protein kinase-like (PK-like) 317 691 IPR011009 -
Cme06g00013 727 MobiDBLite consensus disorder prediction 69 92 - -
Cme06g00013 727 Gene3D Phosphorylase Kinase; domain 1 333 414 - -
Cme06g00013 727 ProSiteProfiles Protein kinase domain profile. 335 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g00013 727 PANTHER FLIPPASE KINASE 1-RELATED 46 727 - -
Cme06g00013 727 MobiDBLite consensus disorder prediction 276 308 - -
Cme06g00013 727 SMART serkin_6 335 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g00013 727 Pfam Protein kinase domain 336 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g00013 727 Pfam Protein kinase domain 564 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g00013 727 MobiDBLite consensus disorder prediction 193 207 - -
Cme06g00013 727 MobiDBLite consensus disorder prediction 269 312 - -
Cme06g00013 727 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 46 727 - -
Cme06g00013 727 Gene3D Transferase(Phosphotransferase) domain 1 562 685 - -
Cme06g00013 727 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Cme06g00013 727 Gene3D Transferase(Phosphotransferase) domain 1 415 484 - -
Cme06g00013 727 MobiDBLite consensus disorder prediction 69 86 - -
Cme06g00013 727 CDD STKc_phototropin_like 333 686 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00013 Cme-Chr6:92673 Cme12g00788 Cme-Chr12:14316880 0 dispersed
Cme07g01422 Cme-Chr7:19932244 Cme06g00013 Cme-Chr6:92673 1.32E-112 dispersed
Cme06g00013 Cme-Chr6:92673 Cme08g01220 Cme-Chr8:8594012 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64920 PF00069 Pkinase 5.30E-36 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00013 - - csv:101217551 1413.67