Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00023 ATGAAGGCAAGGAGGGCTCTGCGTGCGCTCAAGGGGCTCGTAAAGCTGCAGGCTCTGGTGAGAGGTCACAATGTCAGGAAACAAGCTAAGATGACCCTCCGATGCATGCAAGCTCTGGTTCGAGTGCAGGCCCGTGTGCTCGATCAGCGGATGCGACTCTCTCACGAGGGGTCTGGTAATTCCACACTCAGCGACCCTAGTACCGCCCTCGGATCCCGTTACCTTCAATACTTGTCTGACAGGAAGGAGTTTGCAATGAAACGTGATAGAAATCTCTCCCAACAGATATGGCGGAGAGGTCGAAGTCCGTCCATGGGCAGCGGAGATGATCTGGAAGAAAGACCCAAGTGGTTGGATCAATGGAATTCAAGGCAGGCATGGGAAAGCAGGGGAAGAGCTTCAACAGATCAAAGAGATCCAATCAAAACAGTGGAAATCGACACCTTCCAGCCTTACACTCGTACATCCTCCAACTTCCGAAGAATGGCCCAAAATCTACAAAGAACAAACCCGCATTCGGGCAGTTCCCCACTTAACCGGATGCAACAAAACGTATACTCTTTCCACCAGTCACCGGCCACACCCTCCCCATCTAAAACCAGGCCTATGCTGCAAGTCCGGTCTGCAAGCCCGCGTTTCGTTAGAGAAGACAAAAGCAACAATACATCCCAAACACCGAGCTTAAGGTCAAACTATTACTACAGTGGGAATTTGGTCCAACAAGGGAGGAGTGGGGCGAGTAGCAGTTATGGTGGTGAAGGCAATTGTTTGCCCAATTACATGGCGGCCACGGAGTCTGCAAAGGCACGATTGCGGTCGCAGAGCGCACCAAGGCAAAGGGCATCAACGCCGGAGAGGGAGAGGGAGAAGGGAGGAGTTGGGTGTGCGAAGAAACGGCTGTCATTCCCAGTTGCGGATCCAATTGGGCATGGAGTTTTGAGGAGTCCAAGTTTCAAGAGCGTGAGCGGGACGTACTTGGGGATGGAGCAGCAATCTAACTATTCTTCCTGCTGTACTGAGAGCCTAGGCGGAGAGATTTCCCCATCGTCAACCTCGGATCTAAGAAGGTGGCTAAGGTGA 1080 52.41 MKARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRMRLSHEGSGNSTLSDPSTALGSRYLQYLSDRKEFAMKRDRNLSQQIWRRGRSPSMGSGDDLEERPKWLDQWNSRQAWESRGRASTDQRDPIKTVEIDTFQPYTRTSSNFRRMAQNLQRTNPHSGSSPLNRMQQNVYSFHQSPATPSPSKTRPMLQVRSASPRFVREDKSNNTSQTPSLRSNYYYSGNLVQQGRSGASSSYGGEGNCLPNYMAATESAKARLRSQSAPRQRASTPEREREKGGVGCAKKRLSFPVADPIGHGVLRSPSFKSVSGTYLGMEQQSNYSSCCTESLGGEISPSSTSDLRRWLR 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 155118 157261 - MELO3C005949.2.1 Cme06g00023 329172

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00023 359 MobiDBLite consensus disorder prediction 215 231 - -
Cme06g00023 359 MobiDBLite consensus disorder prediction 95 115 - -
Cme06g00023 359 ProSiteProfiles IQ motif profile. 11 38 IPR000048 GO:0005515
Cme06g00023 359 MobiDBLite consensus disorder prediction 209 231 - -
Cme06g00023 359 PANTHER PROTEIN IQ-DOMAIN 1-LIKE ISOFORM X1 78 359 - -
Cme06g00023 359 MobiDBLite consensus disorder prediction 267 294 - -
Cme06g00023 359 Pfam Protein of unknown function (DUF4005) 210 318 IPR025064 -
Cme06g00023 359 PANTHER IQ-DOMAIN 5-RELATED 78 359 - -
Cme06g00023 359 MobiDBLite consensus disorder prediction 335 359 - -
Cme06g00023 359 PANTHER IQ-DOMAIN 5-RELATED 3 69 - -
Cme06g00023 359 PANTHER PROTEIN IQ-DOMAIN 1-LIKE ISOFORM X1 3 69 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00023 - - - csv:101221270 702.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00023 Cme-Chr6:155118 Cme11g02263 Cme-Chr11:29739482 2.67E-121 dispersed
Cme06g00023 Cme-Chr6:155118 Cme02g00188 Cme-Chr2:1482468 4.10E-19 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme09g00610 . 1 470 IQD Protein Family AT3G52290 54.2 1.6e-101 366.7
Cme02g00846 . 1 406 IQD Protein Family AT3G22190 56.7 1.3e-95 347.1
Cme07g00215 . 1 438 IQD Protein Family AT2G26180 60.5 1.0e-116 417.2
Cme08g00247 . 59 332 IQD Protein Family AT2G33990 52.5 3.2e-63 238.8
Cme07g01328 . 40 223 IQD Protein Family AT2G33990 53.5 5.8e-49 191.4
Cme08g00247 . 59 290 IQD Protein Family AT3G15050 50.4 4.8e-56 214.9
Cme07g01328 . 43 216 IQD Protein Family AT3G15050 61.6 1.0e-53 207.2
Cme11g02263 . 1 512 IQD Protein Family AT4G00820 50.4 5.9e-109 391.7
Cme06g00023 . 3 359 IQD Protein Family AT4G00820 52.8 3.1e-81 299.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002938 1 3 2 3 3 1 2 1 1 1 1 1 2 2 2 2 1 3 2 2 2 2 2 2 2 1 1 1 2 3 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00023 Cme_Chr06 FPKM 31.558657 29.135862 18.206015 15.386481 14.799335 19.114864 14.822339 17.896097 18.375351 17.301571