Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme06g00023 | ATGAAGGCAAGGAGGGCTCTGCGTGCGCTCAAGGGGCTCGTAAAGCTGCAGGCTCTGGTGAGAGGTCACAATGTCAGGAAACAAGCTAAGATGACCCTCCGATGCATGCAAGCTCTGGTTCGAGTGCAGGCCCGTGTGCTCGATCAGCGGATGCGACTCTCTCACGAGGGGTCTGGTAATTCCACACTCAGCGACCCTAGTACCGCCCTCGGATCCCGTTACCTTCAATACTTGTCTGACAGGAAGGAGTTTGCAATGAAACGTGATAGAAATCTCTCCCAACAGATATGGCGGAGAGGTCGAAGTCCGTCCATGGGCAGCGGAGATGATCTGGAAGAAAGACCCAAGTGGTTGGATCAATGGAATTCAAGGCAGGCATGGGAAAGCAGGGGAAGAGCTTCAACAGATCAAAGAGATCCAATCAAAACAGTGGAAATCGACACCTTCCAGCCTTACACTCGTACATCCTCCAACTTCCGAAGAATGGCCCAAAATCTACAAAGAACAAACCCGCATTCGGGCAGTTCCCCACTTAACCGGATGCAACAAAACGTATACTCTTTCCACCAGTCACCGGCCACACCCTCCCCATCTAAAACCAGGCCTATGCTGCAAGTCCGGTCTGCAAGCCCGCGTTTCGTTAGAGAAGACAAAAGCAACAATACATCCCAAACACCGAGCTTAAGGTCAAACTATTACTACAGTGGGAATTTGGTCCAACAAGGGAGGAGTGGGGCGAGTAGCAGTTATGGTGGTGAAGGCAATTGTTTGCCCAATTACATGGCGGCCACGGAGTCTGCAAAGGCACGATTGCGGTCGCAGAGCGCACCAAGGCAAAGGGCATCAACGCCGGAGAGGGAGAGGGAGAAGGGAGGAGTTGGGTGTGCGAAGAAACGGCTGTCATTCCCAGTTGCGGATCCAATTGGGCATGGAGTTTTGAGGAGTCCAAGTTTCAAGAGCGTGAGCGGGACGTACTTGGGGATGGAGCAGCAATCTAACTATTCTTCCTGCTGTACTGAGAGCCTAGGCGGAGAGATTTCCCCATCGTCAACCTCGGATCTAAGAAGGTGGCTAAGGTGA | 1080 | 52.41 | MKARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRMRLSHEGSGNSTLSDPSTALGSRYLQYLSDRKEFAMKRDRNLSQQIWRRGRSPSMGSGDDLEERPKWLDQWNSRQAWESRGRASTDQRDPIKTVEIDTFQPYTRTSSNFRRMAQNLQRTNPHSGSSPLNRMQQNVYSFHQSPATPSPSKTRPMLQVRSASPRFVREDKSNNTSQTPSLRSNYYYSGNLVQQGRSGASSSYGGEGNCLPNYMAATESAKARLRSQSAPRQRASTPEREREKGGVGCAKKRLSFPVADPIGHGVLRSPSFKSVSGTYLGMEQQSNYSSCCTESLGGEISPSSTSDLRRWLR | 359 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 155118 | 157261 | - | MELO3C005949.2.1 | Cme06g00023 | 329172 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme06g00023 | 359 | MobiDBLite | consensus disorder prediction | 215 | 231 | - | - | |
| Cme06g00023 | 359 | MobiDBLite | consensus disorder prediction | 95 | 115 | - | - | |
| Cme06g00023 | 359 | ProSiteProfiles | IQ motif profile. | 11 | 38 | IPR000048 | GO:0005515 | |
| Cme06g00023 | 359 | MobiDBLite | consensus disorder prediction | 209 | 231 | - | - | |
| Cme06g00023 | 359 | PANTHER | PROTEIN IQ-DOMAIN 1-LIKE ISOFORM X1 | 78 | 359 | - | - | |
| Cme06g00023 | 359 | MobiDBLite | consensus disorder prediction | 267 | 294 | - | - | |
| Cme06g00023 | 359 | Pfam | Protein of unknown function (DUF4005) | 210 | 318 | IPR025064 | - | |
| Cme06g00023 | 359 | PANTHER | IQ-DOMAIN 5-RELATED | 78 | 359 | - | - | |
| Cme06g00023 | 359 | MobiDBLite | consensus disorder prediction | 335 | 359 | - | - | |
| Cme06g00023 | 359 | PANTHER | IQ-DOMAIN 5-RELATED | 3 | 69 | - | - | |
| Cme06g00023 | 359 | PANTHER | PROTEIN IQ-DOMAIN 1-LIKE ISOFORM X1 | 3 | 69 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme06g00023 | Cme-Chr6:155118 | Cme11g02263 | Cme-Chr11:29739482 | 2.67E-121 | dispersed | |
| Cme06g00023 | Cme-Chr6:155118 | Cme02g00188 | Cme-Chr2:1482468 | 4.10E-19 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme06g00023 | - | - | csv:101221270 | 702.59 |