Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00032 ATGACGCATTTCCTTTTCTTTGCTGCCCTTATCATCTCTCTTTCACTCACCCCCACTTCCTTTTGCTTCCATCCCAAATCCTTTAACGTCTCCAAGTATCAGTCCTATGACTCCGATTGGTCCCCCGCCGTCGCCACTTGGTACGGTCCTCCTGATGGTGCTGGGAGTGATGGAGGCTCATGTGGGTATGGAAAAGCGGTTGAGCAACCGCCATTTTCGTCGTTTATTGCGGCGGGAGGCCCTTCTTTGTACAAAAATGGCCAAGCCTGTGGAGCTTGTTATCAGGTGAAATGCTCTGGAGAAAGCGCATGCTCAGGGAATCCAGTGACAGTGGTTATAACTGATAGTTGTCCCGGTGGATCCTGTGCTTCCGACTCCGTCCACTTTGACCTAAGTGGCACTGCTTTTGGTGCTATGGCTGCAACTGGTCGGGCAGAAGAACTACGCAGTCTCGGCGTTTTGCACATTCAACATAAAAGGGTGGAGTGCAATTATCCAGGAACGTCGATCAACTTCATCGTTGACTCGGGGTCGAACTCGAACTATTTTGCAGCTTTGATCGAGTATGAGGATGGAGATGGGGAACTTGGTTCAGTGGAGCTGAAACAGGGGGCCTTGGACTCAAACTCATGGATTCCAATGAAGCGGTCATGGGGTGCAGTTTGGAAACTGGACTACGGCTCAGCACTTCAAGCACCCTTCTCCCTCAGGCTTACTGCCCTTGAATCCGGCAAGACTGTGGTTGCTAACAACGTAATTCCGGCTGGATGGCAACCAGGGAAGAGTTATAGATCAGTAGTCAACTTCGATCCACTTAAATAA 822 50.24 MTHFLFFAALIISLSLTPTSFCFHPKSFNVSKYQSYDSDWSPAVATWYGPPDGAGSDGGSCGYGKAVEQPPFSSFIAAGGPSLYKNGQACGACYQVKCSGESACSGNPVTVVITDSCPGGSCASDSVHFDLSGTAFGAMAATGRAEELRSLGVLHIQHKRVECNYPGTSINFIVDSGSNSNYFAALIEYEDGDGELGSVELKQGALDSNSWIPMKRSWGAVWKLDYGSALQAPFSLRLTALESGKTVVANNVIPAGWQPGKSYRSVVNFDPLK 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 232574 234123 - MELO3C005962.2.1 Cme06g00032 329181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00032 273 PRINTS Major pollen allergen Lol pI signature 78 89 IPR005795 GO:0005576|GO:0019953
Cme06g00032 273 PRINTS Major pollen allergen Lol pI signature 118 133 IPR005795 GO:0005576|GO:0019953
Cme06g00032 273 PRINTS Major pollen allergen Lol pI signature 140 155 IPR005795 GO:0005576|GO:0019953
Cme06g00032 273 PRINTS Major pollen allergen Lol pI signature 172 187 IPR005795 GO:0005576|GO:0019953
Cme06g00032 273 PRINTS Major pollen allergen Lol pI signature 188 203 IPR005795 GO:0005576|GO:0019953
Cme06g00032 273 PRINTS Major pollen allergen Lol pI signature 220 237 IPR005795 GO:0005576|GO:0019953
Cme06g00032 273 Pfam Expansin C-terminal domain 170 254 IPR007117 -
Cme06g00032 273 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 58 168 IPR007112 -
Cme06g00032 273 SUPERFAMILY PHL pollen allergen 169 265 IPR036749 -
Cme06g00032 273 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 181 265 IPR007117 -
Cme06g00032 273 Pfam Lytic transglycolase 77 153 IPR009009 -
Cme06g00032 273 Gene3D - 165 269 IPR036749 -
Cme06g00032 273 Gene3D - 25 164 IPR036908 -
Cme06g00032 273 PANTHER EXPANSIN-B2-RELATED 2 270 - -
Cme06g00032 273 PANTHER EXPANSIN-B3 2 270 - -
Cme06g00032 273 SUPERFAMILY Barwin-like endoglucanases 33 167 IPR036908 -
Cme06g00032 273 SMART dpbb_1 76 158 IPR007112 -
Cme06g00032 273 PRINTS Expansin/Lol pI family signature 39 54 IPR007118 GO:0005576
Cme06g00032 273 PRINTS Expansin/Lol pI family signature 57 75 IPR007118 GO:0005576
Cme06g00032 273 PRINTS Expansin/Lol pI family signature 80 98 IPR007118 GO:0005576
Cme06g00032 273 PRINTS Expansin/Lol pI family signature 151 167 IPR007118 GO:0005576
Cme06g00032 273 PRINTS Expansin/Lol pI family signature 211 225 IPR007118 GO:0005576
Cme06g00032 273 PRINTS Expansin/Lol pI family signature 251 265 IPR007118 GO:0005576
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00032 Cme-Chr6:232574 Cme11g01184 Cme-Chr11:18004777 3.13E-68 dispersed
Cme07g02000 Cme-Chr7:25077829 Cme06g00032 Cme-Chr6:232574 6.85E-11 dispersed
Cme06g00032 Cme-Chr6:232574 Cme01g00340 Cme-Chr1:2543498 1.38E-78 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00032 - - csv:101219528 526.939