Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00049 ATGGGCGGGAGAGATGATGACTTGGGACTCACTTTGAGTTTAGGTTTTGGTGTTACCACTCAGCCCACTCACATGCAAAGGCCGTCGATGCATAATCACCTCCGCAAGACTTCTTGGAATGAGCTTTTTCAATTTTCTGATCGAAACGCCGATTCGAGGTCGTTTCTTAGAGGAATCGACGTGAATCGGTTGCCGACGGGCGTGGACGGCGAGGAAGAGAACGGCGTTTCATCTCCGAACACGGAAGCGGAAGCCGAGAGAGCCTCGTGCTCGCGAGGGAGTGATGACGAAGACGGTGGAGGCGGGGACGGCGACGCCTCGAGAAAGAAGCTGAGGTTATCTAAGGAACAGTCAATGGTTCTTGAGGAGACCTTCAAAGAGCACAATACGCTCAATCCTAAGCAAAAGCTGGCACTTGCAAAGCAGCTGAATCTGACACCAAGACAAGTGGAGGTGTGGTTTCAAAACAGAAGGGCAAGGACCAAATTGAAGCAAACAGAAGTAGATTGTGAGTACTTGAAAAGGTGCTGTGAGAATCTAACAGAGGAAAACAGAAGGCTACAGAAGGAGGTGCAAGAGTTGAGAGCACTCAAGCTTTCTCCACAGCTCTATATGCACATGAATCCTCCTACCACCCTAACCATGTGCCCTCAGTGTGAGCGTGTGGCGGTTTCTTCGTCTTCTTCGACGTCAGCTGCTACGACCACACGCCATCCAGCAGCCGCTGGTGTGCAGCGTACCTCTATGGCCATCAACCCGTGGGCAGTGTTACCGATTCAACGTTGA 786 51.4 MGGRDDDLGLTLSLGFGVTTQPTHMQRPSMHNHLRKTSWNELFQFSDRNADSRSFLRGIDVNRLPTGVDGEEENGVSSPNTEAEAERASCSRGSDDEDGGGGDGDASRKKLRLSKEQSMVLEETFKEHNTLNPKQKLALAKQLNLTPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPQCERVAVSSSSSTSAATTTRHPAAAGVQRTSMAINPWAVLPIQR 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 338666 341036 + MELO3C005978.2.1 Cme06g00049 329198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00049 261 MobiDBLite consensus disorder prediction 88 109 - -
Cme06g00049 261 ProSitePatterns 'Homeobox' domain signature. 139 162 IPR017970 GO:0000981|GO:0006355
Cme06g00049 261 SMART HOX_1 106 168 IPR001356 GO:0003677
Cme06g00049 261 MobiDBLite consensus disorder prediction 73 87 - -
Cme06g00049 261 Pfam HD-ZIP protein N terminus 1 81 IPR006712 GO:0005634
Cme06g00049 261 Coils Coil 170 200 - -
Cme06g00049 261 Pfam Homeodomain 108 162 IPR001356 GO:0003677
Cme06g00049 261 SMART halz 164 207 IPR003106 GO:0006355|GO:0043565
Cme06g00049 261 PANTHER - 2 257 - -
Cme06g00049 261 Pfam Homeobox associated leucine zipper 164 198 IPR003106 GO:0006355|GO:0043565
Cme06g00049 261 MobiDBLite consensus disorder prediction 63 109 - -
Cme06g00049 261 CDD homeodomain 108 165 IPR001356 GO:0003677
Cme06g00049 261 SUPERFAMILY Homeodomain-like 94 165 IPR009057 -
Cme06g00049 261 Gene3D - 101 169 - -
Cme06g00049 261 ProSiteProfiles 'Homeobox' domain profile. 104 164 IPR001356 GO:0003677
Cme06g00049 261 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 2 257 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00049 Cme-Chr6:338666 Cme06g02551 Cme-Chr6:32504663 3.13E-91 dispersed
Cme06g00049 Cme-Chr6:338666 Cme01g02508 Cme-Chr1:33076673 3.76E-68 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41402 PF04618 HD-ZIP_N 2.30E-19 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00049 K09338 - csv:101222132 442.965