Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00059 ATGAACGTCAAAGCTCCGGCGACGAGGACTCGGGTTGGGAAGTACGAGCTCGGTAAAACCCTCGGCGAGGGAACTTTTGCTAAGGTCAAGTTCGCAAAAAACGTCGAGAATGGTGATTATGTGGCCATTAAGATTCTCGACCGGGAAAAAGTTCTTCGCCACCGGATGGTCGAACAGATTAAAAGAGAGATTTCGACTCTCAAAGTGGTCAAGCATCCGAACGTTATGGCAAGCAAATCAAAGATCTACATTGTTCTTGAGTATGTGGATGGAGGCGAGCTTTTTGACAAGATAGCTGCAAAGGGAAGGCTTAAAGAGGATGAGGCAAGGAAATATTTCCATCAACTTATTAATGCTGTAGATTACTGCCATAGTAGAGGCGTGTACCATCGAGATCTGAAGCCTGAAAATCTTCTTCTGGATTCACATGATGTTCTTAAAGTGTCAGATTTTGGATTGAGTGCATTTTCGCAGCAAGTACGAGGGGATGGTCTTCTTCACACTGCCTGTGGGACCCCAAACTACGTTGCTCCTGAGGTCCTCAATGATAAAGGTTATGATGGTACATCTTCTGATCTTTGGTCATGCGGGATTTCCAAGGCTGATTTTGCCTTTCCTTCGTGGTTCTCAAATGGTGCGAAAAAACTAGTTCGCCGCATTCTTGATCCAGACCCTACTACTCGAATATCAATAGCAGAAATTCAAGAAGATCCATGGTTCAAGAAAGACTACACACCTGCTCATTTTGAAGTGGAGGAGGATATAACTCTTGATGATGTAGATGCCGCTTTTAGCAGCTCGAAGGAGCATCTTGTTACCGAAAGAAAAGAGAAGCCAGTGTCCATGAATGCTTTCGAGCTTATCTCTAGGTCACCCGGTTTTAGTCTTGAAAATCTATTTGAAAAGCAGAAGACTGTTGCAAAGAGAGAAACTCGTTTTACTTCGCAAAGCCCTGCAAACGAGATCATGTCGAAGATTGAAGAAACTGCAAAACCGATGGGTTTCAACGTACGAAAACGGGACTATAAGATGAAGTTGCAAGGTGACAAGACTGGGAGGAAAGGACACCTCTCCATAGCTACTGAGGTCTTTGAAGTGGCTCCTTCCTTGCATATGGTGGAGCTTCGGAAAACAGGGGGCGACACGCTCGAGTTTCACAAGGCATGTTATCAGTAA 1176 44.64 MNVKAPATRTRVGKYELGKTLGEGTFAKVKFAKNVENGDYVAIKILDREKVLRHRMVEQIKREISTLKVVKHPNVMASKSKIYIVLEYVDGGELFDKIAAKGRLKEDEARKYFHQLINAVDYCHSRGVYHRDLKPENLLLDSHDVLKVSDFGLSAFSQQVRGDGLLHTACGTPNYVAPEVLNDKGYDGTSSDLWSCGISKADFAFPSWFSNGAKKLVRRILDPDPTTRISIAEIQEDPWFKKDYTPAHFEVEEDITLDDVDAAFSSSKEHLVTERKEKPVSMNAFELISRSPGFSLENLFEKQKTVAKRETRFTSQSPANEIMSKIEETAKPMGFNVRKRDYKMKLQGDKTGRKGHLSIATEVFEVAPSLHMVELRKTGGDTLEFHKACYQ 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 390114 394435 - MELO3C005987.2.1 Cme06g00059 329208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00059 391 SUPERFAMILY Protein kinase-like (PK-like) 12 271 IPR011009 -
Cme06g00059 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Cme06g00059 391 SMART serkin_6 15 240 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g00059 391 PANTHER - 198 387 - -
Cme06g00059 391 Gene3D Kinase associated domain 1, KA1 276 391 - -
Cme06g00059 391 ProSiteProfiles Protein kinase domain profile. 15 240 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g00059 391 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 198 387 - -
Cme06g00059 391 CDD CIPK_C 283 389 - -
Cme06g00059 391 Pfam NAF domain 279 339 IPR004041 GO:0007165
Cme06g00059 391 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Cme06g00059 391 PANTHER - 7 198 - -
Cme06g00059 391 Gene3D Phosphorylase Kinase; domain 1 4 88 - -
Cme06g00059 391 Gene3D Transferase(Phosphotransferase) domain 1 89 247 - -
Cme06g00059 391 ProSiteProfiles NAF domain profile. 277 301 IPR018451 GO:0007165
Cme06g00059 391 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 7 198 - -
Cme06g00059 391 Pfam Protein kinase domain 15 199 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00059 Cme-Chr6:390114 Cme12g01159 Cme-Chr12:19714735 1.40E-175 dispersed
Cme11g02119 Cme-Chr11:28778672 Cme06g00059 Cme-Chr6:390114 4.45E-14 dispersed
Cme06g00059 Cme-Chr6:390114 Cme08g00116 Cme-Chr8:871731 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64921 PF00069 Pkinase 6.20E-55 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00059 - - csv:101203531 743.421