Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00078 ATGGAGTTTCCTGATACTGCTGCTGAGAAAGATCCTACCGGTCGATACATTCGGATGTCTTGTGAAATTTACAAGGCATTCGACGAAGTGGATGGAATTGAAGTTGCCTGGAATCAAGTTAGGATTGATGGTTTCTTGCAATCACCTGAGGATTTGGAAAAGTTGTACTCTGAAGTACATCTACTTAAATCATTAAAACATGAGAATATTATCAAGTTCTACAATTCTTGGGTGGATGATAAGAAGAAAAATGTCAACATGATCACTGAGCTCTTCACATCTGGGAGTTTGAGGCAATATCGTAAAAAGCATAAACATGTTGATATGAAGGCCATAAAGAATTGGGCACGACAGATTCTCCGAGGGTTGGTTTATCTTCACAGTCATGATCCTCCCATTATTCATAGAGATTTGAAAGGCGATAACATTTTTATTAATGGAAATCATGGAGAAGTTAAAATTGGAGATCTTGGATTAGCAATCGTTATGCAGCAGCCTACCGCTCGTAGTGTAATTGGAACTCCTGAATTCATGGCTCCTGAGCTTTATGAAGAGGAGTACAATGAGCTTGTTGATGTATATTCTTTTGGGATGTGCATGCTGGAGATGGTGACCTTTGAGTATCCATATAGTGAATGTAAAAATCCAGCTCAGATCTTTAGGAAAGTTACATCTGTCCATAATATCAATGCTGACCTTCTTCTTAATCAGGGTATTAAACCTGCTTCCCTTGCTAAGGTGAGTGATCCACGGACCATGGAATTCATCAATAAATGTTTGGTCCCAGTGCACGAGAGGTTGTCTGCAAAAGAGCTTCTTCAAGATTCGTTCCTTCAAGTTGAGAACCCAAAGGAATCGGCACGCAATCCCCTACAGCTATCTAATCAGGTTTCTAGATCAATAAATTTGCCCAAGAGTGGACCTATTTCCATGGACATTGACATTGACCACAAACTACATTCTTTAAGCAATTATGCTGAAAGCAATAGTGGGAGTCCACGCTTTCCAGTTGTGGAATTCCAGACAATGAATAAGAACAATGAGTTCAGGTTACGTGGAAATAAGAATGACGACAACTCTGTGGCATTAACTCTGCGTATTGCAGACCCAAATGGTCGAGTGAGAAATATACATTTTACGTTTTATCTCGATTCTGATACTGCATTGTCAGTTGCTGCTGAAATGGCCGAACAGTTGGAGTTGATAAATCATGATGTGGATTTCATAGCTGAATTTATTGATTTTTTGATAACAAAGCTTATACCTGGTTGGAAGCCCTTATCTGTTTATTCCTCAAATGGAGAATCGAGTCTTTGCAGCGCCCCCCCTGTCCTTAAAAGTGCCAAATCATCTGTGAGATCTCCTTGGGGTTCAATGTTAACTGGGAGTCATGATGGGTTGGTCGCACAAGACACTTCCTCTGGGATGGTGTGTGGTACTCAAACGGATAGTCTGCAATCTGAACGAAATGGCTGGACTGGTGATATTTCCGGTGGTCACATTTTTGACACTTGCCCTTCTTCACCCAGTTTGGCTAATTTTGAGGACTCGAATTCACATGCTTCATTCGCGTTGGAGTTACTGGTCGACGATTGCTCTACCAAAAGTGCTAAGGTGTTTGATTGTTCCAATATCGATGGGAGTTCAAAAGGCTCGAGCTGGTCGATTGCAGAACTAGAGCACCAAGGTTCATCATATGTTGAAGACAAATTGCAAAGGAATGTTAGTGGTGTTGGAATCTTCACTCCCTTGGATTATTTTGTGAAGAACTCGGTGGTGTCAATGCCTGCTCCAAGTGAAGCATCTAATGTGATGAGCTTGACAAGCAGTTGCTCTTCGTTATCGTTAGCAGACAAGGATCTCGATGCTGAACTGAAGATGGAAATCGATGCTATCGAGACACATTATCGACAACTGTTTGACGAGCTATCTCGAATGAGAGAGGAGGCACTAGAGGCCACCAGAAGGAGATGGATTGCAAAGAAGAAACTGATTCATTGA 2001 41.43 MEFPDTAAEKDPTGRYIRMSCEIYKAFDEVDGIEVAWNQVRIDGFLQSPEDLEKLYSEVHLLKSLKHENIIKFYNSWVDDKKKNVNMITELFTSGSLRQYRKKHKHVDMKAIKNWARQILRGLVYLHSHDPPIIHRDLKGDNIFINGNHGEVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEEEYNELVDVYSFGMCMLEMVTFEYPYSECKNPAQIFRKVTSVHNINADLLLNQGIKPASLAKVSDPRTMEFINKCLVPVHERLSAKELLQDSFLQVENPKESARNPLQLSNQVSRSINLPKSGPISMDIDIDHKLHSLSNYAESNSGSPRFPVVEFQTMNKNNEFRLRGNKNDDNSVALTLRIADPNGRVRNIHFTFYLDSDTALSVAAEMAEQLELINHDVDFIAEFIDFLITKLIPGWKPLSVYSSNGESSLCSAPPVLKSAKSSVRSPWGSMLTGSHDGLVAQDTSSGMVCGTQTDSLQSERNGWTGDISGGHIFDTCPSSPSLANFEDSNSHASFALELLVDDCSTKSAKVFDCSNIDGSSKGSSWSIAELEHQGSSYVEDKLQRNVSGVGIFTPLDYFVKNSVVSMPAPSEASNVMSLTSSCSSLSLADKDLDAELKMEIDAIETHYRQLFDELSRMREEALEATRRRWIAKKKLIH 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 495461 499786 - MELO3C006004.2.1 Cme06g00078 329227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00078 666 PANTHER KINASE DOMAIN PROTEIN 2 664 - -
Cme06g00078 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
Cme06g00078 666 Pfam Protein kinase domain 22 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g00078 666 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 2 664 - -
Cme06g00078 666 Gene3D - 359 425 - -
Cme06g00078 666 ProSiteProfiles Protein kinase domain profile. 1 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g00078 666 SUPERFAMILY Protein kinase-like (PK-like) 22 279 IPR011009 -
Cme06g00078 666 CDD STKc_WNK 15 278 - -
Cme06g00078 666 Gene3D Phosphorylase Kinase; domain 1 1 90 - -
Cme06g00078 666 Gene3D Transferase(Phosphotransferase) domain 1 92 284 - -
Cme06g00078 666 SMART serkin_6 16 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g00078 666 Coils Coil 629 656 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00078 Cme-Chr6:495461 Cme09g01869 Cme-Chr9:22863296 0 dispersed
Cme06g00078 Cme-Chr6:495461 Cme11g01446 Cme-Chr11:21379247 2.73E-129 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64922 PF00069 Pkinase 2.70E-50 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00078 K08867 - csv:101204101 1187.56