Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00104 ATGAGAATGAAAGTGATTGGGCGTTCGTCTACAATACGTCAACGTCGTTTGCCCCTGCGAAGTTCAGCTGCCATTTCTGTTCATCAATCCGTATCAATTCGCGTTTCAGAGCTCTTTTCTGGAGCTTACGTTACTAAATTTGTCGACACTAAGCATTTTCAACGACTGTTGGAATCTTGTTTGCAGAAAGAAAGACATGGGATGGTGGTCATTCCTTTTTTTGCCAAGGATTTAGCCATTGTATTAGTAATCTTACCGGTTGTGTTGACTTTTAATGTGAATAATCAAGCCTACAAGAGAAATACCTATGCATATAACCACAGAGATGTGATCATTCTGCTTTCAACTGATATGAAGACGGCACAGAGAGCTCAAGATACAAAAAAAGCTTTGGATGAAACTGAAAATAACCTACCAAACAACAAAACTGAGGCTCCTATAACAGACGCAGGTTCAGTATCTGGCTCAAACAATGATGGCAAAAAAGTTTCTCACCAAGATATTGAATTTGTCCAGAATTTAATAGAGCGGTGCCTACAATTGTATATGAATAGAGATGAGGTAGTTAAGACCCTGCTGAATCGTGCAAGGATAGATCCTGGATTTACGTCATTAGTTTGGCAGAAGCTGGAAGAAGAGAATGCTGATTTTTTCAGAGCTTATTACATAAGGTTAAAATTGAAAAAGCAAATCCTCCTTTTTAATCATTTGCTTGAACATCAATACCGTCTCATGAACTATTCCATGCCTCCCAAAGTTTCATTAGCTCCTATGCAGAATGGAATTCATCCTATATCTGTTAACAACTTACCAATGGGATATCCAGTCCTTCAACAACCGCCTATTTCAATGCCAGGTCAACCCCATTTGGATACCGTGGGCTCTGGAATGTCAAGCTGCCATGTTGTTAATGGAGTTCCTGCACCTAGTAACTTCCATCCTATTAGGATGAACTCTGGGAACGATATGTTGATGAACAGCGAGGCTGATGTGGTTCCTGTTATTCCACCAAACGGTAACATGTCCTCCCTTTCAGAGATGTCTCTGAGTCCTACATCAGTGGCATCCAGTGGTCATTTCTCATTCACTGCTCCAGAAATATCCGGAATTGGAGTAGATACTTCTGCACTCGATACTGCATTTACATCAGACATGGTAAGTTCAGTGGGTTTGCAACTTTCACAAGATGGTGGAGCTGGAAATTCTAGGGATTCTCTCAGATCATTGGATCAGATACAGTGGAATTTTAACCTGGATTTTACAACAGATCTATCGAATTTGGGAGATTTAGGACCATTAGGTAACTACCCTGGTTCTCCTTTTTTGCCCTCGGACTCAGAAATTTTAATTGATTCACCGGAGCAAGAAGATATAGGGGAAGGAAGCCGTAGTTCTCTTGTGTTGCTCATTTCGGAAATCTCCATTTGCTTAGAAGTTGAAGCAGCTGGCTGTTCAGTTTTTAATCCCCAGTCTGGATTTAAAGACATTCTTATTCCACAGGCAGCATCAGAGAAACCTGAATATGAAGGTTACCAATACAGAAGCAGACTGTCTCCAGAGTCAATATTGGAAAGCATAGAGAGAAGATTTTCAAGTGTTTCTGATTGGTTTAGAGGAATAAGTACAATCTTTGGCTTCAAGCATTCAGGTGATCAGTCGGTAAAGAAACCAAAATTTTGGAAAAAAATTCTTGATCCAAATAAGCCATTTCTTCAGCAATGGAACAAGATATTTGTGCTCTCCTCTGTCATAGCAGTGGCCGTGGATCCTCTCTTCTTTTACATCGCAGGGATCGATAAAAAACTTTATTGCCTAACCGTGGACCGACATCTGATGATCATTGCTTGTGTTCTTCGTTCATTCTTCGACTTATTTTATATACTGCACATAATCTTTGAATTTCGAACCGGTTTTCTCCCCCCATCTTTACCGGTTTTTGGAAGTGGTGAGTTAATCAAAGATCCAGCAAAAATAGCAAAGAAATATCTCTCTTCAAACTTCTTGATCGATATCTTATCCATTCTCCCACTGCCTCAGCTTTTGGTATTAGCAATCTTACCTGCAGCAAAAGGCTATACTCCTTTGAAGTCAAGGAACTTCCTGAACATTGCAAATATTTTGCAATATATTCCAAGAATTTTTCGAATCTATCCACTCTATAGAGAAGTAACCAGAACTTCTGGCATACTGACAGAAACAGCTTGGAGTGGAGCTGCTTTCAATCTCCTCATCTATATACAAGCTGGTCATGTAGTTGGTGCCGTTTGGTATTCGTTATCAATCAAACGGCAGATCAAATGTTGGTTCAACGAATGCAAGAATGATAATAAATGTCTCCACAATTTTTTGTACTGTGAAGATCCAAAAGGACAAACAAACTCGACTATAAATGAGTATTGCTCTCCTAGAAAGCTTGACGATGGAAAACACTTCGAGTTTGGGATGTTTGATGAAGCCCTTAAGTTTCAATTAACCACGACAACGAATTTTTGCCGGAAATTATTCTATTCCTTCTGGTGGGCTTTGCAAAATGTCAGCTCTAGTGGACAAAACCTTAAAGTAAGCAAGTACATGGAGGAGGTTCTTTTTTCTGTCTTCATCGCCATCCTTGGTTTGGTTTTATTTGCGTTACTTATTAGTAACATTCAGAAATACCTGCAGTCGGCAACTGTTAAAATAGAGCAGATGAGAATTAACCGAAGAGATGCCGAGCATTGGATGGCACATCGTATGCTCCCAGAGGAGTTGAGGCAACGTATTCGTCGATATGATCAGTACAAATGGCAGCTAAATAGGGGAGTTAAGGAAGAGGAACTCATCTGTAACCTTCCTAAAGACCTTAGGAGAGACATCAAACAACACCTTTGCTTGGCCCATCTCAAGAAAGTGCCACTTTTTAGCGGCATGGACAAACAACTGTTAGACTCGATGTGTGAATATCTCAAGCCTGTGTTATTTACAAAGAAGAGCTTCATTCTGCAAGAGGGTGACACAATTGATATGATGCTATTTATCATGAAAGGAGAGCTGGCTACCATTACTACTTGTGGTTGGAAAAATGACCCGTACTTGGGCACTCTTAAAGCTGGTGACTTTTGTGGTGAAGAGCTAGTTCAATGGGCAATGGATCCCAGCTCCACTTGTCTTCCCATTTCAAATAGAACAATTAAAACTCTTACTGAGGTTGAAGCCTTTGCCCTAAATGGTAATGAGCTGGAATCTGTAACTAGTCAGTTCCGCTACCAGCGCCTCAATAGCAAGCAGTTCCAACTCTCAGTGAGGCATGCTCTTCTAACTGAAGTTACACATAAATCGTTCTACCATTGA 3327 40.31 MRMKVIGRSSTIRQRRLPLRSSAAISVHQSVSIRVSELFSGAYVTKFVDTKHFQRLLESCLQKERHGMVVIPFFAKDLAIVLVILPVVLTFNVNNQAYKRNTYAYNHRDVIILLSTDMKTAQRAQDTKKALDETENNLPNNKTEAPITDAGSVSGSNNDGKKVSHQDIEFVQNLIERCLQLYMNRDEVVKTLLNRARIDPGFTSLVWQKLEEENADFFRAYYIRLKLKKQILLFNHLLEHQYRLMNYSMPPKVSLAPMQNGIHPISVNNLPMGYPVLQQPPISMPGQPHLDTVGSGMSSCHVVNGVPAPSNFHPIRMNSGNDMLMNSEADVVPVIPPNGNMSSLSEMSLSPTSVASSGHFSFTAPEISGIGVDTSALDTAFTSDMVSSVGLQLSQDGGAGNSRDSLRSLDQIQWNFNLDFTTDLSNLGDLGPLGNYPGSPFLPSDSEILIDSPEQEDIGEGSRSSLVLLISEISICLEVEAAGCSVFNPQSGFKDILIPQAASEKPEYEGYQYRSRLSPESILESIERRFSSVSDWFRGISTIFGFKHSGDQSVKKPKFWKKILDPNKPFLQQWNKIFVLSSVIAVAVDPLFFYIAGIDKKLYCLTVDRHLMIIACVLRSFFDLFYILHIIFEFRTGFLPPSLPVFGSGELIKDPAKIAKKYLSSNFLIDILSILPLPQLLVLAILPAAKGYTPLKSRNFLNIANILQYIPRIFRIYPLYREVTRTSGILTETAWSGAAFNLLIYIQAGHVVGAVWYSLSIKRQIKCWFNECKNDNKCLHNFLYCEDPKGQTNSTINEYCSPRKLDDGKHFEFGMFDEALKFQLTTTTNFCRKLFYSFWWALQNVSSSGQNLKVSKYMEEVLFSVFIAILGLVLFALLISNIQKYLQSATVKIEQMRINRRDAEHWMAHRMLPEELRQRIRRYDQYKWQLNRGVKEEELICNLPKDLRRDIKQHLCLAHLKKVPLFSGMDKQLLDSMCEYLKPVLFTKKSFILQEGDTIDMMLFIMKGELATITTCGWKNDPYLGTLKAGDFCGEELVQWAMDPSSTCLPISNRTIKTLTEVEAFALNGNELESVTSQFRYQRLNSKQFQLSVRHALLTEVTHKSFYH 1108
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 652005 662829 - MELO3C006031.2.1 Cme06g00104 329253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00104 1108 CDD CAP_ED 965 1073 IPR000595 -
Cme06g00104 1108 Pfam Ion transport protein 573 891 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cme06g00104 1108 ProSiteProfiles cAMP/cGMP binding motif profile. 965 1035 IPR000595 -
Cme06g00104 1108 Gene3D - 577 889 - -
Cme06g00104 1108 SUPERFAMILY Voltage-gated potassium channels 566 887 - -
Cme06g00104 1108 SUPERFAMILY cAMP-binding domain-like 895 1079 IPR018490 -
Cme06g00104 1108 Pfam Plant protein 1589 of unknown function (A_thal_3526) 171 222 IPR006476 -
Cme06g00104 1108 MobiDBLite consensus disorder prediction 124 160 - -
Cme06g00104 1108 Gene3D Jelly Rolls 963 1081 IPR014710 -
Cme06g00104 1108 MobiDBLite consensus disorder prediction 136 160 - -
Cme06g00104 1108 SMART cnmp_10 965 1088 IPR000595 -
Cme06g00104 1108 TIGRFAM A_thal_3526: uncharacterized plant-specific domain TIGR01589 168 224 IPR006476 -
Cme06g00104 1108 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 1 530 1095 - -
Cme06g00104 1108 Gene3D Helix hairpin bin 892 956 - -
Cme06g00104 1108 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 530 1095 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00102 Cme-Chr6:640088 Cme06g00104 Cme-Chr6:652005 0 dispersed
Cme06g00104 Cme-Chr6:652005 Cme09g01973 Cme-Chr9:23623350 0 dispersed
Cme10g00855 Cme-Chr10:5743225 Cme06g00104 Cme-Chr6:652005 5.91E-13 dispersed
Cme06g00103 Cme-Chr6:646155 Cme06g00104 Cme-Chr6:652005 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00104 K05391 - csv:101206736 1082.4