Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00151 TACTCATTACTCATTACACCCTTATCACCAAAAGTCAGCGCCTTCTTTTGTCTCTATTTTTCTCTCTTACAACAAAACAACCAAAAAAGAAAAGAAAAGAAAAGAACTGATCAAAGAGAAGAAGCTGAGAGAGAGACAAAGGTACAGATTCTCAGAGCAGAGTTCTGTCTTTTGATAATGGAAGTCGATTGGGATCTTCATGCCGTCGTCAGAGGTTACTCCGCCGCGCCCTCTGCCGCCACCATTGTTCCTTCTTCTTCTTCTTTTTCCAATAACTCTGTCCCTTTTTCTTTTGGTAGAGACCTAACCAACAATCAAACCAAAAACCATTTCTTCTCTCTTCAAGATCCATTTCAACCCTCTAATTGTAATTCCACTCAAGAATTGCATGAGCTTTTCAAACCCTTTTTCCCTAAATCTCAACCCTCTTCTTCTTCTCCTACGCCGCCTCCTCCTCCTCCACCGCCTGCTGCTCCCCCGCTTCTTTCTTCTCCGGCACCTAAAATTTTGACTCATCACAAACAGAGCACCCATCTCCCTAAACAGCTCCATTCAACCTCTGTTTCTGCTCCGAGATCCAAACGCCGGAAGAATCAGCTGAAGAAGGTTTGTCAAGTTCCGGCGGAGTCTCTATCTTCGGATATTTGGGCTTGGCGAAAATATGGACAAAAACCCATTAAAGGATCTCCATATCCAAGGGGATATTATAGATGTAGCAGTTCGAAGGGTTGCATGGCCCGAAAACAAGTGGAGAGGAACAGATCCGACCCGGGAATGTTCATAGTCACTTACACGGCTGAGCACAACCACCCGGCGCCCACTCACCGCAACTCTCTCGCCGGCTCCACCCGTCAGAAACCCGTCACGCCGACCACCACCGCGTCCGGATCTGAAAAACTCGACCCGAAACAGCCGGTCTGCTCGTCGGAAGAACAGAGTACGATCACGGAGAGCAAAGAAGAGAAAGAGGAATTATTAATGGCCGAAGATGAAGAAGACGACGATCTGGGAGTCTCCGATTTGATCGTGAACGACGATTTCTATGTGGGTTTTGAAGAACTCGACAGCCCAATCACCGACGACTGCTTTTCCGATCAATTCCCGGCGAACTTTGACCTTCCATGGTTGTTTAACGGAAATCCAGACGGCGAAATTGTAAAACTCCCCTGTTAA 1173 46.97 YSLLITPLSPKVSAFFCLYFSLLQQNNQKRKEKKRTDQREEAERETKVQILRAEFCLLIMEVDWDLHAVVRGYSAAPSAATIVPSSSSFSNNSVPFSFGRDLTNNQTKNHFFSLQDPFQPSNCNSTQELHELFKPFFPKSQPSSSSPTPPPPPPPPAAPPLLSSPAPKILTHHKQSTHLPKQLHSTSVSAPRSKRRKNQLKKVCQVPAESLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCMARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGSTRQKPVTPTTTASGSEKLDPKQPVCSSEEQSTITESKEEKEELLMAEDEEDDDLGVSDLIVNDDFYVGFEELDSPITDDCFSDQFPANFDLPWLFNGNPDGEIVKLPC 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 903897 905940 - MELO3C006081.2.1 Cme06g00151 329300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00151 390 MobiDBLite consensus disorder prediction 270 299 - -
Cme06g00151 390 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 60 371 IPR044810 GO:0003700
Cme06g00151 390 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 60 371 - -
Cme06g00151 390 Coils Coil 25 45 - -
Cme06g00151 390 SUPERFAMILY WRKY DNA-binding domain 210 273 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme06g00151 390 SMART WRKY_cls 212 272 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme06g00151 390 MobiDBLite consensus disorder prediction 136 205 - -
Cme06g00151 390 MobiDBLite consensus disorder prediction 142 163 - -
Cme06g00151 390 Pfam WRKY DNA -binding domain 214 271 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme06g00151 390 Gene3D WRKY domain 196 266 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme06g00151 390 ProSiteProfiles WRKY domain profile. 207 273 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme06g00151 390 MobiDBLite consensus disorder prediction 267 334 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00151 Cme-Chr6:903897 Cme12g01269 Cme-Chr12:20787454 8.24E-30 dispersed
Cme11g00698 Cme-Chr11:8243822 Cme06g00151 Cme-Chr6:903897 2.07E-28 dispersed
Cme07g02094 Cme-Chr7:25669058 Cme06g00151 Cme-Chr6:903897 5.83E-31 transposed
Cme08g00057 Cme-Chr8:449728 Cme06g00151 Cme-Chr6:903897 2.60E-44 transposed
Cme12g01018 Cme-Chr12:17787998 Cme06g00151 Cme-Chr6:903897 3.75E-41 transposed
Cme06g00151 Cme-Chr6:903897 Cme07g01614 Cme-Chr7:21928416 3.12E-44 wgd
Cme06g00151 Cme-Chr6:903897 Cme09g01938 Cme-Chr9:23415488 7.56E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41412 PF03106 WRKY 5.70E-25 CL0274 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00151 K13425 - csv:101217082 539.265