Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00164 ATGGCATGCAGAAGGTTTGCTGCGTGCTCATTTCAATCTTTCAAGCCTTACACGAAGATTTCCAAATACGTTGACCGAGTCCTTAGACCGAATGTTGTTCTAAATAAAAGATACTATAATGACGAATCTCACAGTTTTAAAAGAGCCACTGTATGTGGTTTACATATTCCAAGTTATGGTACACATCGCATTGATACATTTCTGCCCGCATCGTCAATGAAATACTGGAACACTATCCCTCTTACTTCTATTGGGAATTTGTCAAATTATCGGAATTATTCATCTACTTCTGGTAGAAAAGCTGATATAACTGGAGATACTGGTGTGCCAGCAGCTTCTGCGGGTGTTGAACCGGATATCAGTAACCCCCCTGATGTTGGAAGGGACTTGCTTGAAAAGGTTAAGGATGTCTGGCAAAGTGCTGTTGATGCAGCATCTTTTACGGGGCAGAAGGCTAAAGAAGTGTCGGATGAATTATCTCCGCACGTTGATAAACTACTCGATTCACATCCTTATCTAAAAAATGTGATTGTTCCTGTAAGTATGACCTTGGCTGGTACTCTTTTGGCTTGGGCGGTAATGCCTAGGCTTTTGAGGAGATTTCATAAGTATTCAATGCGAAGTCCTGTTGCCATAATATCTGGAGCCTTACCTAGTGAGGAAATTCCATATGAGAAAAGTTTTTGGGGTGCACTTGAGGATCCTTTGCGATATCTTGTTACCTTCTTTGCATTTTCTCAAATTGGCGTGATAGTTGCACCAACTGCAGTAGCGCCGGAATTTGTTTCACAGGCCTGCAGAGGGGCTGTAATTCTTTCCCTTGTCTGGTTTATCTATCGCTGGAAAACAAATGTGTTTTCCCGAGCCTTGGCCACCCAGACTTCTGCAGGGCTTGATCGGGACAGGTTACTTACCCTTGACAAAGTTTCATCTGTTGCTCTATTTGCTATTGGATTGATGGCTTTGGCCGAGGCATCTGGTGTGGCTGTTCAATCTATGCTGACGGTTGGTGGCATTGGAGGAGTGGCCACTGCTTTTGCTGCGAGGGACGTACTTGGGAATATTTTGAGTGGCTTAACGATGCAGTTTTCACAACCCTTCTCACTTGGAGATACAATTAAGGCTGGTACTATTGAAGGTCAAGTTGTGGAAATGGGACTCATGACAACATCGCTATTAAGTGCTGAAAAATTTCCAGTCGTTGTTCCAAATTCTCTGTTTTCTAGCCAGGTAATTATAAATAAGTCGAGGGCACAGTGGCGTGCAATAGTGAAGAGGGTTCCTTTGCAAGTTGATGATATTAGTACAGTTTCTCAGATAACAGATGATATTAAGAAGATGCTTATGTCTCACCCTAAGGTGTTTTTGGGCAAGGAGGCTCCTTATTGTTTTCTCTCTCAAATTGAAAGTACATATGCAGAATTGACAGTAGGTTGTAACCTTAAAAAAATGGGTAAAGATGAATCGTTCTCTACAGAGCAAGATATTCTCCTTCAGTCAGTACAAATCATTAAGGCGAGAGGTGCAACCTTAGGAAGCACCGTGTCAGATTGGACGAACAAGTAA 1566 42.34 MACRRFAACSFQSFKPYTKISKYVDRVLRPNVVLNKRYYNDESHSFKRATVCGLHIPSYGTHRIDTFLPASSMKYWNTIPLTSIGNLSNYRNYSSTSGRKADITGDTGVPAASAGVEPDISNPPDVGRDLLEKVKDVWQSAVDAASFTGQKAKEVSDELSPHVDKLLDSHPYLKNVIVPVSMTLAGTLLAWAVMPRLLRRFHKYSMRSPVAIISGALPSEEIPYEKSFWGALEDPLRYLVTFFAFSQIGVIVAPTAVAPEFVSQACRGAVILSLVWFIYRWKTNVFSRALATQTSAGLDRDRLLTLDKVSSVALFAIGLMALAEASGVAVQSMLTVGGIGGVATAFAARDVLGNILSGLTMQFSQPFSLGDTIKAGTIEGQVVEMGLMTTSLLSAEKFPVVVPNSLFSSQVIINKSRAQWRAIVKRVPLQVDDISTVSQITDDIKKMLMSHPKVFLGKEAPYCFLSQIESTYAELTVGCNLKKMGKDESFSTEQDILLQSVQIIKARGATLGSTVSDWTNK 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 999292 1002963 - MELO3C006094.2.1 Cme06g00164 329313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00164 521 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 1, MITOCHONDRIAL-RELATED 69 517 - -
Cme06g00164 521 Gene3D - 366 414 IPR023408 -
Cme06g00164 521 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 69 517 - -
Cme06g00164 521 Gene3D - 262 364 - -
Cme06g00164 521 Pfam Mechanosensitive ion channel 308 508 IPR006685 GO:0016020|GO:0055085
Cme06g00164 521 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 267 349 IPR011014 GO:0016020
Cme06g00164 521 SUPERFAMILY Sm-like ribonucleoproteins 350 415 IPR010920 -
Cme06g00164 521 MobiDBLite consensus disorder prediction 101 122 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00164 Cme-Chr6:999292 Cme06g02224 Cme-Chr6:28835312 2.02E-13 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00164 K22047 - csv:101220483 980.704