Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00164 ATGGCATGCAGAAGGTTTGCTGCGTGCTCATTTCAATCTTTCAAGCCTTACACGAAGATTTCCAAATACGTTGACCGAGTCCTTAGACCGAATGTTGTTCTAAATAAAAGATACTATAATGACGAATCTCACAGTTTTAAAAGAGCCACTGTATGTGGTTTACATATTCCAAGTTATGGTACACATCGCATTGATACATTTCTGCCCGCATCGTCAATGAAATACTGGAACACTATCCCTCTTACTTCTATTGGGAATTTGTCAAATTATCGGAATTATTCATCTACTTCTGGTAGAAAAGCTGATATAACTGGAGATACTGGTGTGCCAGCAGCTTCTGCGGGTGTTGAACCGGATATCAGTAACCCCCCTGATGTTGGAAGGGACTTGCTTGAAAAGGTTAAGGATGTCTGGCAAAGTGCTGTTGATGCAGCATCTTTTACGGGGCAGAAGGCTAAAGAAGTGTCGGATGAATTATCTCCGCACGTTGATAAACTACTCGATTCACATCCTTATCTAAAAAATGTGATTGTTCCTGTAAGTATGACCTTGGCTGGTACTCTTTTGGCTTGGGCGGTAATGCCTAGGCTTTTGAGGAGATTTCATAAGTATTCAATGCGAAGTCCTGTTGCCATAATATCTGGAGCCTTACCTAGTGAGGAAATTCCATATGAGAAAAGTTTTTGGGGTGCACTTGAGGATCCTTTGCGATATCTTGTTACCTTCTTTGCATTTTCTCAAATTGGCGTGATAGTTGCACCAACTGCAGTAGCGCCGGAATTTGTTTCACAGGCCTGCAGAGGGGCTGTAATTCTTTCCCTTGTCTGGTTTATCTATCGCTGGAAAACAAATGTGTTTTCCCGAGCCTTGGCCACCCAGACTTCTGCAGGGCTTGATCGGGACAGGTTACTTACCCTTGACAAAGTTTCATCTGTTGCTCTATTTGCTATTGGATTGATGGCTTTGGCCGAGGCATCTGGTGTGGCTGTTCAATCTATGCTGACGGTTGGTGGCATTGGAGGAGTGGCCACTGCTTTTGCTGCGAGGGACGTACTTGGGAATATTTTGAGTGGCTTAACGATGCAGTTTTCACAACCCTTCTCACTTGGAGATACAATTAAGGCTGGTACTATTGAAGGTCAAGTTGTGGAAATGGGACTCATGACAACATCGCTATTAAGTGCTGAAAAATTTCCAGTCGTTGTTCCAAATTCTCTGTTTTCTAGCCAGGTAATTATAAATAAGTCGAGGGCACAGTGGCGTGCAATAGTGAAGAGGGTTCCTTTGCAAGTTGATGATATTAGTACAGTTTCTCAGATAACAGATGATATTAAGAAGATGCTTATGTCTCACCCTAAGGTGTTTTTGGGCAAGGAGGCTCCTTATTGTTTTCTCTCTCAAATTGAAAGTACATATGCAGAATTGACAGTAGGTTGTAACCTTAAAAAAATGGGTAAAGATGAATCGTTCTCTACAGAGCAAGATATTCTCCTTCAGTCAGTACAAATCATTAAGGCGAGAGGTGCAACCTTAGGAAGCACCGTGTCAGATTGGACGAACAAGTAA 1566 42.34 MACRRFAACSFQSFKPYTKISKYVDRVLRPNVVLNKRYYNDESHSFKRATVCGLHIPSYGTHRIDTFLPASSMKYWNTIPLTSIGNLSNYRNYSSTSGRKADITGDTGVPAASAGVEPDISNPPDVGRDLLEKVKDVWQSAVDAASFTGQKAKEVSDELSPHVDKLLDSHPYLKNVIVPVSMTLAGTLLAWAVMPRLLRRFHKYSMRSPVAIISGALPSEEIPYEKSFWGALEDPLRYLVTFFAFSQIGVIVAPTAVAPEFVSQACRGAVILSLVWFIYRWKTNVFSRALATQTSAGLDRDRLLTLDKVSSVALFAIGLMALAEASGVAVQSMLTVGGIGGVATAFAARDVLGNILSGLTMQFSQPFSLGDTIKAGTIEGQVVEMGLMTTSLLSAEKFPVVVPNSLFSSQVIINKSRAQWRAIVKRVPLQVDDISTVSQITDDIKKMLMSHPKVFLGKEAPYCFLSQIESTYAELTVGCNLKKMGKDESFSTEQDILLQSVQIIKARGATLGSTVSDWTNK 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 999292 1002963 - MELO3C006094.2.1 Cme06g00164 329313

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00164 521 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 1, MITOCHONDRIAL-RELATED 69 517 - -
Cme06g00164 521 Gene3D - 366 414 IPR023408 -
Cme06g00164 521 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 69 517 - -
Cme06g00164 521 Gene3D - 262 364 - -
Cme06g00164 521 Pfam Mechanosensitive ion channel 308 508 IPR006685 GO:0016020|GO:0055085
Cme06g00164 521 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 267 349 IPR011014 GO:0016020
Cme06g00164 521 SUPERFAMILY Sm-like ribonucleoproteins 350 415 IPR010920 -
Cme06g00164 521 MobiDBLite consensus disorder prediction 101 122 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00164 K22047 MSL1_2_3; mechanosensitive ion channel protein 1/2/3 - csv:101220483 980.704
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00164 Cme-Chr6:999292 Cme06g02224 Cme-Chr6:28835312 2.02E-13 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme06g00164 . 129 520 Mechanosensitive Ion Channel Family AT4G00290 65.8 9.0e-152 533.9
Cme03g01806 . 10 692 Mechanosensitive Ion Channel Family AT5G10490 57.4 7.2e-197 684.1
Cme06g02224 . 18 635 Mechanosensitive Ion Channel Family AT5G10490 55.3 2.2e-169 592.8
Cme03g01806 . 10 672 Mechanosensitive Ion Channel Family AT1G58200 57.4 7.3e-197 684.1
Cme06g02224 . 37 417 Mechanosensitive Ion Channel Family AT1G58200 69.0 3.0e-150 529.3
Cme11g01254 . 43 927 Mechanosensitive Ion Channel Family AT1G53470 55.4 3.9e-259 891.3
Cme01g01219 . 84 951 Mechanosensitive Ion Channel Family AT1G53470 50.4 1.2e-236 816.6
Cme11g01254 . 43 927 Mechanosensitive Ion Channel Family AT3G14810 52.8 5.6e-247 850.9
Cme11g01254 . 43 918 Mechanosensitive Ion Channel Family AT1G78610 59.2 1.5e-279 959.1
Cme01g01219 . 52 951 Mechanosensitive Ion Channel Family AT1G78610 55.6 1.8e-272 935.6
Cme11g01254 . 217 927 Mechanosensitive Ion Channel Family AT2G17000 60.7 2.6e-236 815.5
Cme01g01219 . 266 939 Mechanosensitive Ion Channel Family AT2G17000 58.0 1.9e-218 756.1
Cme02g00283 . 59 751 Mechanosensitive Ion Channel Family AT5G12080 52.4 2.8e-194 675.6
Cme07g00186 . 61 715 Mechanosensitive Ion Channel Family AT5G12080 53.3 4.3e-187 651.7
Cme07g00187 . 81 730 Mechanosensitive Ion Channel Family AT5G12080 52.6 2.0e-176 616.3
Cme07g00182 . 68 703 Mechanosensitive Ion Channel Family AT5G12080 52.6 1.6e-173 606.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008844 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00164 Cme_Chr06 FPKM 10.283117 11.626806 13.36707 12.202566 7.17473 4.691809 7.012776 13.643693 13.986963 13.587919