Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00197 ATGGATTTATCTTGTAGTACTTGGAAGCAAAATGTGTTACGTGGTAGTGAAAGAACATATTGCAAGACGTTGGACCAGTTTGGTCCCAGAAGTGTGCTTAGAAATAGAATTTTTGATGCTAAGTTGACTGGTGGTTCAAGAGTGAGTTATAAAGTGCCTAAGAAGAGAAACAGAATTGTAGCTTCTAGTGATTCCAATCATCTGAGTCTGGTTTGTGCCAGCAAGTTCGACAGGGCTTTGCAAATTTTTACACCCAAGAGATTCTTGAACTGGAACAATAAGATAAGTGGACGAGGGATGGGTATGGTTCATTTAGAGTGTCAAAACAATGATTCTTTAGCATTTATTGATGGAAATGGCAGAAATATTGAATATGTAAATTCTGGTGATGAGGGGTCCAGTTCTGGGCCTGCTGATGGTGTCGGGTCAGCCGGTTCCAGAGAAGTGGGTGGAGAAGCAGAAACAGTTGAAACAAACATACCAACTGTTGATGAGCTCAGAGAATTGCTGCAAAAGGCCATGAAAGAACTGGAAGTTGCGAGACTTAACAGCACAATGTTTGAGGAGAGAGCCCAAAAAATTTCAGAAGCAGCAATAGCTTTGCAAGATGAAGCAACCAATGCTTGGAATGACGTGAACTCTACTCTTGATTCTGTACAACAGATAGTGAACGAAGAATATGTTGCCAAAGAAGCTGTTCAAAAAGCAACCATGGCTCTTTCATTAGCAGAGGCAAGGCTTCAGGTGGCAATTGAGTCACTGGAGCTGGCAAAAAGAGGAAGCGATTTTCCAGAAACATCAATGGATAGTGATGGGGTGATTGATGGCAAGGAAGATCAAGAAGCTTTGTTAGTTGCTCAAGAGGACATCACAGATTGCCGAGCAAATTTGGAAATCTGTAATGCGGAATTGATGCGCTTACAGAGTAAAAAGGAAGAGTTACAGAAGGAAGTGGACAGGTTGAACGAGTTAGCTGAAAAAGCACAATTGAATGCATTGAAAGCTGAAGAAGATGTGGCAAATATAATGCTTTTGGCTGAGCAAGCTGTTGCTTTTGAACTCGAGGCTGCCCAAAGGGTCAATGATGCTGAAAGAGCATTACAGAAAGTGGAGAAATCTTTATCAAGTTCTTTTGTTGACACTTCAGACATCACTCAGGGGTCAAATGTTATTGAAGAAGTTGAGAACGAGGATAACAAGGCAGTTCTAGAAATCTCTGGTGATATTGCTGTTGAAATGGATAGAGAGTTGCCACTTAATGGTGATTCCTTAGCGATCAAGTCTCTGCCAGGTAGCCTTTCAGATTCTGAAGGCTCCGATCAACCTTATTACTTAAGCGATAGCGAGAATGGAAAATTAAGTTCAGACTCTGCAAAGGAGGTTGAATCTGGAGCAGAGAAGTCTATTTTGAGTCAAACAAAAAAGCAGGAAATACAGAAGGATTTGACAAGAGAAGGCTCACCTTTAAACTCCCCCAAGGCTCTATTGAAAAAATCTTCTCGCTTTTTTTCAGCATCATTCTTTTCGTTTACGGTTGATGGGACAGAGTTCACTCCAGCATTAGTCTTCCAGGGTCTTCTGGATTCCACCAAAAAGCAATTGCCGAAGCTAATTGTTGGAGCAGTACTATTAGGAGCAGGGATTGCTGTCTTTGCAAATCGAGCAGAAAGGAGTTCTCAGATGATTCCACAGCCTGATGTTGTCACTATTAGCACTGATGATGTTTCCTTGGACACAAAGCCCTTATTTCAACAATTGAGGAAACTTCCTAAAAGAGTGAAGAAGTTAATTTCACAGATTCCCCATCAAGAGGTGAATGAAGAGGAGGCTTCACTGTTAGACATGTTATGGCTGTTGCTTGCCAGTGTCATATTTGTGCCAACATTTCAGAAACTTCCAGGAGGAAGTCCTGTCCTTGGGTACTTGGCTGCTGGTATTTTAATTGGGCCATATGGTCTCTCCATAATCCGTCATGTGCATGGAACAAAAGCAATTGCTGAATTTGGAGTTGTTTTTCTTCTGTTCAACATTGGGCTGGAGTTATCAGTTGAGAGGCTAAGTTCCATGAAGAAATATGTATTTGGGTTAGGGTCTGCACAGGTTTTGGTTACAGCTGTAGTGGTTGGCCTGGTTGCTCACATGGTCTGTGGCCAGGCTGGCCCAGCTGCTATTGTCATTGGAAATGGATTGGCTTTGTCATCCACTGCTGTTGTCCTTCAGGTGTTGCAAGAGCGAGGTGAGAGTACTTCACGACATGGGCGTGCCACATTTTCTGTCTTACTATTCCAGGATTTGGCTGTTGTGGTTTTGCTGATTCTCATACCTCTAATTTCACCTAATTCATCCAAAGGAGGGATTGGTTTCCAAGCCATCGCTGAAGCTCTTGGCCTGGCTGCTGTTAAGGCAATTGTTGCCATTTCTGCCATAATAGCTGGTGGGCGTCTGCTACTACGACCAATTTATAAACAAATAGCTGAAAATCAAAATGCAGAAATATTCTCTGCCAACACACTACTTGTCATTCTGGGAACTAGTCTACTTACTGCCAGGGCTGGACTATCAATGGCGCTGGGTGCTTTTCTAGCAGGTTTACTTCTAGCAGAAACAGAATTCTCCTTGCAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTGTTGGGTCTCTTCTTCATGACGGTTGGGATGTCTATCGATCCAAAACTTCTTTTTTCTAACTTTCCAGTTATCATGGGGTCTTTGGGACTTCTTATTGGTGGCAAGACTATATTGGTTGCCTTGGTTGGTAGACTTTTTGGTATCTCAATTATATCTGCGATAAGAGTTGGGTTGCTTCTTGCTCCTGGTGGAGAATTTGCTTTTGTGGCATTTGGTGAAGCTGTCAATCAGGGTATAATGTCTTCTCAACTATCCTCTTTACTGTTTCTTGTTGTGGGAATTTCAATGGCCCTTACACCATGGCTAGCTGCTGGCGGTCAGTTAATTGCTTCCCGGTTTGAGCAGCATGATGTCCGGAGTTTATTGCCTGTTGAAAGTGAGACAGATGATTTACAAGATCATATCATTATTTGTGGATTTGGACGAGTTGGTCAGATAATAGCCCAGCTTCTGTCAGAGCGACTGATTCCCTTTGTTGCCCTTGATGTGAGGAGTGATAGAGTGGCCGTAGGACGTGCCTTAGACCTTCCAGTGTATTTTGGAGACGCAGGAAGTCGAGAGGTTTTACACAAAGTCGGTGCTGAAAGGGCATGTGCTGCTGCAATAACACTGGATACACCGGGTGCAAATTACCGAACTGTTTGGGCTCTGAGCAAATATTTCCCTAATGTTAAGACTTTTGTTCGAGCTCATGATGTTGATCACGGTCTTAATTTAGAGAAGGCCGGTGCTACTGCGGTAGTTCCCGAGACGTTGGAACCGAGTTTACAGTTGGCTGCTGCTGTTCTTGCTCAGGCTAAACTACCCATGTCAGAGATTGCTGCAACAATTAACGAGTTTAGGTCCCGACATTTATCTGAGCTTACCGAGCTATGTGAAGCCAGTGGAAGTTCGCTCGGATACGGGTTTTCTCGAATCATGAGTAAACCAAAAATCCAAACCTCTGATTCTTCAGATGAGAATCAAGTCACTGAAGGAACACTGGCCATATAA 3651 43.08 MDLSCSTWKQNVLRGSERTYCKTLDQFGPRSVLRNRIFDAKLTGGSRVSYKVPKKRNRIVASSDSNHLSLVCASKFDRALQIFTPKRFLNWNNKISGRGMGMVHLECQNNDSLAFIDGNGRNIEYVNSGDEGSSSGPADGVGSAGSREVGGEAETVETNIPTVDELRELLQKAMKELEVARLNSTMFEERAQKISEAAIALQDEATNAWNDVNSTLDSVQQIVNEEYVAKEAVQKATMALSLAEARLQVAIESLELAKRGSDFPETSMDSDGVIDGKEDQEALLVAQEDITDCRANLEICNAELMRLQSKKEELQKEVDRLNELAEKAQLNALKAEEDVANIMLLAEQAVAFELEAAQRVNDAERALQKVEKSLSSSFVDTSDITQGSNVIEEVENEDNKAVLEISGDIAVEMDRELPLNGDSLAIKSLPGSLSDSEGSDQPYYLSDSENGKLSSDSAKEVESGAEKSILSQTKKQEIQKDLTREGSPLNSPKALLKKSSRFFSASFFSFTVDGTEFTPALVFQGLLDSTKKQLPKLIVGAVLLGAGIAVFANRAERSSQMIPQPDVVTISTDDVSLDTKPLFQQLRKLPKRVKKLISQIPHQEVNEEEASLLDMLWLLLASVIFVPTFQKLPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHMVCGQAGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGIGFQAIAEALGLAAVKAIVAISAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLFSNFPVIMGSLGLLIGGKTILVALVGRLFGISIISAIRVGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLVVGISMALTPWLAAGGQLIASRFEQHDVRSLLPVESETDDLQDHIIICGFGRVGQIIAQLLSERLIPFVALDVRSDRVAVGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPMSEIAATINEFRSRHLSELTELCEASGSSLGYGFSRIMSKPKIQTSDSSDENQVTEGTLAI 1216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1209989 1223121 + MELO3C006129.2.1 Cme06g00197 329346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00197 1216 TIGRFAM 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 619 899 IPR004771 GO:0006812|GO:0008324|GO:0016021
Cme06g00197 1216 PANTHER K(+) EFFLUX ANTIPORTER 1, CHLOROPLASTIC-RELATED 1 1216 - -
Cme06g00197 1216 Coils Coil 297 338 - -
Cme06g00197 1216 ProSiteProfiles RCK N-terminal domain profile. 1020 1142 IPR003148 GO:0006813
Cme06g00197 1216 Coils Coil 163 183 - -
Cme06g00197 1216 MobiDBLite consensus disorder prediction 431 490 - -
Cme06g00197 1216 Pfam Sodium/hydrogen exchanger family 618 988 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cme06g00197 1216 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1017 1159 IPR036291 -
Cme06g00197 1216 Pfam TrkA-N domain 1021 1134 IPR003148 GO:0006813
Cme06g00197 1216 Coils Coil 353 373 - -
Cme06g00197 1216 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 1 1216 - -
Cme06g00197 1216 Gene3D - 1016 1180 - -
Cme06g00197 1216 MobiDBLite consensus disorder prediction 431 452 - -
Cme06g00197 1216 Gene3D - 608 996 IPR038770 -
Cme06g00197 1216 MobiDBLite consensus disorder prediction 126 155 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00170 Cme-Chr1:1181913 Cme06g00197 Cme-Chr6:1209989 3.48E-91 dispersed
Cme06g00197 Cme-Chr6:1209989 Cme06g00928 Cme-Chr6:6511481 3.31E-42 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00197 - - cmo:103483290 2228.37