Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00227 ATGGTGAGAGGAAAAACTCAGATGAGAAGAATAGAAAATGCGACAAGTCGGCAAGTGACATTCTCGAAGCGTCGGAATGGGCTTCTCAAAAAAGCCTTTGAGCTCTCAGTTCTCTGTGATGCTGAAATTGCTCTCATCATTTTCTCTTCTAGAGGCAAACTCTATGAATTTTCAAGCTCAAGCATGCAGGCCACGGTGGAGAGATATCTAAGGCATACAAGATCAAATCAATCCCATCATCTTGATCAACTTTCAGCTCATCAACCCGATTTACAATCTGTGCAGAGTGAAGCTGCAAGTTTGTTGAAGGAGATAGAATCTGTTGAAGTTGCAAAGAGAAAATTGTTAGGTGAAGGTCTAGGAAAAAGCTCATATGAAGAACTCCAACAACTAGAACAACAACTAGAAAGAAGCTTATCCCATATTAGAGCTAGAAAGAATGAGGTTTACAGGGAACAGATAGAACAACTAAAAGAAAAGGAGAAGCATTTGATAGCCGAAAATGCAAAGCTAGCTAAAAAGTACTTTGTTGAAGAGGAGCCTCAACAATCTCCAACTGATCAAATACAGATAGCAGAAGTTTCACCTAATTATGCAGAAAGTAGTTCCATTTCAGACGTTGAAACTGATTTGTTCATTGGACCACCCAAGTCCAGATCCAAGTGA 666 39.64 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEIALIIFSSRGKLYEFSSSSMQATVERYLRHTRSNQSHHLDQLSAHQPDLQSVQSEAASLLKEIESVEVAKRKLLGEGLGKSSYEELQQLEQQLERSLSHIRARKNEVYREQIEQLKEKEKHLIAENAKLAKKYFVEEEPQQSPTDQIQIAEVSPNYAESSSISDVETDLFIGPPKSRSK 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1373704 1378609 + MELO3C006159.2.1 Cme06g00227 329376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00227 221 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Cme06g00227 221 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cme06g00227 221 Pfam K-box region 87 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cme06g00227 221 PANTHER MADS-BOX PROTEIN SOC1 1 217 - -
Cme06g00227 221 Coils Coil 125 174 - -
Cme06g00227 221 ProSiteProfiles K-box domain profile. 91 183 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cme06g00227 221 Coils Coil 91 111 - -
Cme06g00227 221 Gene3D - 14 90 IPR036879 GO:0003677|GO:0046983
Cme06g00227 221 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cme06g00227 221 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cme06g00227 221 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cme06g00227 221 PANTHER MADS BOX PROTEIN 1 217 - -
Cme06g00227 221 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cme06g00227 221 MobiDBLite consensus disorder prediction 200 221 - -
Cme06g00227 221 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cme06g00227 221 SUPERFAMILY SRF-like 3 82 IPR036879 GO:0003677|GO:0046983
Cme06g00227 221 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00227 Cme-Chr6:1373704 Cme11g02531 Cme-Chr11:31756996 4.29E-74 dispersed
Cme09g00032 Cme-Chr9:268946 Cme06g00227 Cme-Chr6:1373704 1.25E-32 transposed
Cme06g00227 Cme-Chr6:1373704 Cme06g00949 Cme-Chr6:6728550 9.17E-58 wgd
Cme06g00227 Cme-Chr6:1373704 Cme09g01706 Cme-Chr9:21690768 2.95E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41420 PF01486 K-box 2.30E-24 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00227 - - csv:101209501 362.073