Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00245 ATGTCTGTTACTTTGCACACAAATCTCGGAGACATCAAGTGCGAGATTTTTTGCGATGAAGTCCCGAAATCTGCTGAGAACTTTTTGGCATTGTGTGCAAGTGGTTACTATGACGGAACCATATTCCATCGCAATATCAAAGGTTTTATGATACAAGGTGGAGACCCAACCGGCACAGGAAAAGGAGGAACTAGCATATGGGGCAAGAAGTTTAATGACGAGATAAAAGAGTCACTCAAGCACAATGCTAGAGGGATATTATCAATGGCCAACAGTGGAGCAAATACAAACGGAAGCCAATTTTTTATAACTTATGCAAAGCAGCCACATTTAAATGGATTATATACTGTTTTCGGCAGAGTGATTCATGGGTTTGAAGTACTTGATATCATGGAAAAGACACAAACTGGACCAGGAGATCGTCCTCTCGCAGAGATCAGGCTGAATCGGGTGACGATACATGCTAATCCTCTTGCAGGCTAA 483 42.03 MSVTLHTNLGDIKCEIFCDEVPKSAENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIKESLKHNARGILSMANSGANTNGSQFFITYAKQPHLNGLYTVFGRVIHGFEVLDIMEKTQTGPGDRPLAEIRLNRVTIHANPLAG 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1469136 1472141 + MELO3C006176.2.1 Cme06g00245 329394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00245 160 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 37 54 IPR020892 GO:0003755|GO:0006457
Cme06g00245 160 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 6 153 IPR002130 GO:0000413|GO:0003755
Cme06g00245 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Cme06g00245 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Cme06g00245 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 85 100 IPR002130 GO:0000413|GO:0003755
Cme06g00245 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 100 112 IPR002130 GO:0000413|GO:0003755
Cme06g00245 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 128 IPR002130 GO:0000413|GO:0003755
Cme06g00245 160 CDD Cyclophilin_PPIL3_like 1 153 - -
Cme06g00245 160 SUPERFAMILY Cyclophilin-like 1 157 IPR029000 -
Cme06g00245 160 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 2 159 IPR044666 -
Cme06g00245 160 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 3 152 IPR002130 GO:0000413|GO:0003755
Cme06g00245 160 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 3 2 159 - -
Cme06g00245 160 PIRSF Peptidylpro_ismrse 1 157 IPR024936 GO:0003755
Cme06g00245 160 Gene3D - 1 160 IPR029000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00941 Cme-Chr5:13003190 Cme06g00245 Cme-Chr6:1469136 1.50E-10 dispersed
Cme06g00245 Cme-Chr6:1469136 Cme08g00648 Cme-Chr8:4244860 4.58E-59 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00245 K12734 - csv:101211474 327.791