Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00250 ATGGATCGAGCCACCACCGCGCATGGCCGTCCACTTCCACCGCCATTTATTTCAAGAGATTTCCATCTCAATCCCCACCATCATTTCCTCCACCAAAATCCCGACCAACAATACAACGAAAACGGTAGCTCCGGCAGCGGCGGAGGAGACGGCGAGGTTTTGAAACGGCCACGCGGCCGGCCCGCCGGGTCGAAGAACAAGCCGAAGCCGCCGACGATAATCACACGGGATAGTGCCAACGCACTCCGATGCCACGTCATCGAAATCGCCAACGCTAACGACGTGATTGAAACCCTCACCATTTTCGCACGTCAACGCCAGCGTGGTATTTGTGTCCTGACCGGCGCCGGAGCGGTCACCAACGTCACACTCAAGCAGCCTGTCTCCACCGCCGGAGCGGTGATATCCCTGCCGGGAAGATTCGAGATTCTGTCGTTGTCGGGATCGTTTCTGCCGCCGCCAGCGCCAGCGGCCGCATCTGGGCTGACCGTGTATTTGTCCGGCGGGCAAGGGCAAGTTGTAGGAGGAAGCGTGGTGGGCCCACTTTTGAGTTCGGGGCCGGTGGTGATTACGGCTGCTTCATTCGGAAACGCAGCGTACGAGAGATTGCCGGTGGAGGATGACGACGTGGAAGCGGCGAATGCCGGAAGTAGTCCGATTAGGTCCCCGGAAAACGCCGTGCAACAGCAACAATTTTTGCCGGAATTTCATGGACTGGCGCCGAATCTAATGAACACGTGTCAATTGCCGACGGAACCCTACTGGGGCACAGGTCGTACTCCGCCATTTTAG 792 58.21 MDRATTAHGRPLPPPFISRDFHLNPHHHFLHQNPDQQYNENGSSGSGGGDGEVLKRPRGRPAGSKNKPKPPTIITRDSANALRCHVIEIANANDVIETLTIFARQRQRGICVLTGAGAVTNVTLKQPVSTAGAVISLPGRFEILSLSGSFLPPPAPAAASGLTVYLSGGQGQVVGGSVVGPLLSSGPVVITAASFGNAAYERLPVEDDDVEAANAGSSPIRSPENAVQQQQFLPEFHGLAPNLMNTCQLPTEPYWGTGRTPPF 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1512743 1513534 - MELO3C000307.2.1 Cme06g00250 329399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00250 263 MobiDBLite consensus disorder prediction 30 46 - -
Cme06g00250 263 Pfam Plants and Prokaryotes Conserved (PCC) domain 83 196 IPR005175 -
Cme06g00250 263 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 18 34 263 - -
Cme06g00250 263 MobiDBLite consensus disorder prediction 1 74 - -
Cme06g00250 263 SUPERFAMILY AF0104/ALDC/Ptd012-like 79 209 - -
Cme06g00250 263 Gene3D - 82 214 - -
Cme06g00250 263 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 34 263 IPR014476 GO:0003680
Cme06g00250 263 ProSiteProfiles PPC domain profile profile. 79 216 IPR005175 -
Cme06g00250 263 CDD DUF296 83 151 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00250 Cme-Chr6:1512743 Cme10g00915 Cme-Chr10:6686355 6.40E-62 dispersed
Cme11g02522 Cme-Chr11:31705602 Cme06g00250 Cme-Chr6:1512743 1.28E-81 wgd
Cme06g00250 Cme-Chr6:1512743 Cme09g01678 Cme-Chr9:21490222 1.06E-71 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00250 - - csv:101212439 481.1