Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00253 ATGAGCTCGAGGCGGAGCAGTGGAAGTTGCACAAAAGGCAAGGGTGGTGGCAGCAACGGCAGTGGTGGACCGTGTGGGGCGTGCAAGTTTCTGCGGAGGAAGTGTACGCCAGAGTGTATATTTGCACCCTACTTTGACTCAGAACAAGGTACAACTCATTTTGCAGCCGTACACAAAGTGTTTGGTGCAAGCAATGTGTCGAAGATGCTTCTACATATTCCTGAACATAAACGGCTTGACGCAGCTATAACTATATGTTACGAGGCACAAGCTCGAGTCAGAGAGCCAGTTCTCGGCTGTGTTGCTCATATTTTTGCCCTTCAACAACAGGCTGCAAGGTTGCAAATAGAGATCTCATATTTGCAAGGGTACCTAGCAACATCTGAGCTTCCAAGACCCGCACCCCATCTTCAGGCACAACCACCAGCTCTAGTCAAGAAGCCAACTCTATCCTCAATTGTAAGCCTTCCATCAGATTGCCCTTCATTTCCGGCTGAATCAGATCTTTCTCTACTTCTTGATCCTGTCGAGCAAGCTTCACAGGAAAAATTGCAGTCTCCATTGGAGTCGTACCAAATTGGAAGCAACAATTTCCCATCCATGGTCAGCATTGATCAACAAGTTGTCCAAAAACAACTGTCTTCGATGCAGCGCATTGGTGCCTCGCTATTTCCAAACGTCCCTAAACGATCTTAA 696 47.41 MSSRRSSGSCTKGKGGGSNGSGGPCGACKFLRRKCTPECIFAPYFDSEQGTTHFAAVHKVFGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVAHIFALQQQAARLQIEISYLQGYLATSELPRPAPHLQAQPPALVKKPTLSSIVSLPSDCPSFPAESDLSLLLDPVEQASQEKLQSPLESYQIGSNNFPSMVSIDQQVVQKQLSSMQRIGASLFPNVPKRS 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1538026 1539410 - MELO3C006183.2.1 Cme06g00253 329402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00253 231 MobiDBLite consensus disorder prediction 1 16 - -
Cme06g00253 231 ProSiteProfiles LOB domain profile. 23 125 IPR004883 -
Cme06g00253 231 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 215 - -
Cme06g00253 231 Pfam Lateral organ boundaries (LOB) domain 24 121 IPR004883 -
Cme06g00253 231 PANTHER LOB DOMAIN-CONTAINING PROTEIN 18 1 215 - -
Cme06g00253 231 MobiDBLite consensus disorder prediction 1 21 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme06g00253 Cme11g02516 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02065 Cme-Chr4:28030339 Cme06g00253 Cme-Chr6:1538026 2.93E-45 dispersed
Cme06g00253 Cme-Chr6:1538026 Cme11g02517 Cme-Chr11:31682796 1.40E-49 dispersed
Cme01g01658 Cme-Chr1:22716328 Cme06g00253 Cme-Chr6:1538026 1.23E-41 transposed
Cme04g01566 Cme-Chr4:22964703 Cme06g00253 Cme-Chr6:1538026 4.55E-49 transposed
Cme10g00914 Cme-Chr10:6680852 Cme06g00253 Cme-Chr6:1538026 4.55E-45 transposed
Cme11g02518 Cme-Chr11:31685370 Cme06g00253 Cme-Chr6:1538026 4.23E-07 transposed
Cme11g02516 Cme-Chr11:31667442 Cme06g00253 Cme-Chr6:1538026 1.74E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41422 PF03195 LOB 7.80E-37 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00253 K21994 - csv:101216934 407.912