Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00279 ATGCCCTTCCCCTTCACTACTTTTCTTCTCCTCCTCTGCCTACCCTTCGTGGCTTCTTCTAATTTTTCGTTGCCTGCGCTGGACTCGGTCCGGTTGGCGCAGACCGGGGTTAGGGAAGCCGTAACCGAAATTGGTAATTTAAAACGACGTCGGTTTGGAGATGGGAATCATCTGCTGGCCGCGCTTCGTGATTGCGCTAAGCTCTATGAGGAGGCCGAGTGGCGGCTCGCGGGGATGTTGGTTGGAGGAGAGAAATATTATAGTGCGGAAGATGGTCGGATGTGGGTCAGCGCCGCCATGGCTAACCATCGGAGTTGTTTGGATGGGTTGGAAGAGGTCGACGCTGATGGGGCGGCGGTGGGAGGGCATAACTTGACGGTGATGCTCACTGGAGCTTTGCATTTATACGATAAGATTGCTGCCGTGGAGAAGCGGAACGGATGGAAGAGATTGGAGAAACGGAAATGGAGAGAAAACAGAGGAATCAACTTGGCAACGTGGAATCCGGCGACGTCGAAGGCGGACTATGTGGTGGCGAAGGATGGATCCGGCACCCACACAACCATAAACAGGGCGGTGGCGGCTCTGGCGAGTACTGGACGGAGACGGGGAGGAGGGAGAATTGTGATATACGTGAAAGCTGGAGTTTACAGGGAGAATGTGGAAATTGGAATACAGTTGAAGAACGTCATGCTTGTCGGCGACGGCATCGACAAAACCATCGTCACCGGTAGCCGCAATGTACCCGACGGCGCCACCACTTATAACTCAGCTACATTCGGCGTTTCCGGCGACGGATTTTGGGCGAGGGACATAACATTCGAGAATACCGCCGGACCGGAAAAGCAACAAGCGGTAGCGCTACGGCTCAATTCCGACCTTGCCGTCGTATACCGGTGCGCAATAAAAGGCTATCAGGATACCCTCTTCCTCCACTCCCTCCGCCAATTCTACCGCGACTGCAAAATCTATGGCACCATCGATTTCATCTTCGGCAACTCGGCTGCCGTCCTCCAGAACTGCGAAATCTTCGTCCGACAGCCGAGACGCCACCAGGCCAACATGATCACCGCCCAAGGCCGCGACGATCCGGCAGAGGCCACTGGAATTTCGATCCTCAACTCCAGAGTCCAGCCGACGCCGGATTTTGCCCCCGTAAAGGCTCAGTACAGGACGTACCTTGGCCGCCCCTGGAAGCGGTTTTCGAGGACGGTGGTAATGGGGACGGATTTGGACGGGTTGATAGATCCGAAAGGGTGGGGAGAATGGACAGGGAATTTTGCGATTTCGACTCTGTTTTATGCAGAGTTTAAGAACAGGGGCGACGGTTCTTCGACGAGATTTAGGGTTAATTGGCCGGGATTTCACGTCCTCCGTTCCGCGGATGAAGCACGGCCTTTCACGGTGGCTGAGTTTCTTCACGGCGGCGATTGGATTCCGGCTTCCGGCGTATCTTTCGAGGCGGGAGTTTGA 1473 55.13 MPFPFTTFLLLLCLPFVASSNFSLPALDSVRLAQTGVREAVTEIGNLKRRRFGDGNHLLAALRDCAKLYEEAEWRLAGMLVGGEKYYSAEDGRMWVSAAMANHRSCLDGLEEVDADGAAVGGHNLTVMLTGALHLYDKIAAVEKRNGWKRLEKRKWRENRGINLATWNPATSKADYVVAKDGSGTHTTINRAVAALASTGRRRGGGRIVIYVKAGVYRENVEIGIQLKNVMLVGDGIDKTIVTGSRNVPDGATTYNSATFGVSGDGFWARDITFENTAGPEKQQAVALRLNSDLAVVYRCAIKGYQDTLFLHSLRQFYRDCKIYGTIDFIFGNSAAVLQNCEIFVRQPRRHQANMITAQGRDDPAEATGISILNSRVQPTPDFAPVKAQYRTYLGRPWKRFSRTVVMGTDLDGLIDPKGWGEWTGNFAISTLFYAEFKNRGDGSSTRFRVNWPGFHVLRSADEARPFTVAEFLHGGDWIPASGVSFEAGV 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1690079 1692675 - MELO3C006207.2.1 Cme06g00279 329428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00279 490 SMART PMEI_2 4 135 IPR006501 GO:0004857
Cme06g00279 490 Pfam Plant invertase/pectin methylesterase inhibitor 29 116 IPR006501 GO:0004857
Cme06g00279 490 Gene3D - 169 490 IPR012334 -
Cme06g00279 490 SUPERFAMILY Pectin lyase-like 170 488 IPR011050 -
Cme06g00279 490 CDD PMEI-like_4 29 136 - -
Cme06g00279 490 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 36-RELATED 6 489 - -
Cme06g00279 490 ProSitePatterns Pectinesterase signature 2. 323 332 IPR033131 -
Cme06g00279 490 ProSitePatterns Pectinesterase signature 1. 204 223 IPR018040 -
Cme06g00279 490 Gene3D Invertase/pectin methylesterase inhibitor family protein 17 139 IPR035513 -
Cme06g00279 490 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 12 127 IPR035513 -
Cme06g00279 490 Pfam Pectinesterase 175 475 IPR000070 GO:0030599|GO:0042545
Cme06g00279 490 PANTHER PECTINESTERASE 6 489 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00279 Cme-Chr6:1690079 Cme06g00898 Cme-Chr6:6304129 9.64E-139 dispersed
Cme06g00279 Cme-Chr6:1690079 Cme06g00280 Cme-Chr6:1704765 3.42E-125 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00279 K01051 - csv:101217635 868.611